jgi.p|Nanoce1779_2|580628, mRNA_2514 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580628
Unique NamemRNA_2514
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1989
Alignment locationscaffold_5:532957..535128 -

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Properties
Property NameValue
TranscriptId580714
TrackFilteredModels2
ProteinId580628
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:532957..535128 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580628gene_2514Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580628mRNA_2514-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2514CDS_2514Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2514 ID=mRNA_2514|Name=jgi.p|Nanoce1779_2|580628|organism=Nannochloropsis oceanica|type=mRNA|length=1989bp
GGTGGGAATGTGGCGGGGCCCATGTCCATCTCCTCCAGGCGCTTGGTTGT
CGATGACCAAAAGGAGTAGGCCGTGCAGAAACAAGAACAAGGAATAAGAA
GAAGACATTGTTGATATATTATAAAAAGGAGGAAGGGCTTAAGGGTTTAC
TTAGAATGTGCGGACAGGTTTCTGGGACATTAATGGCAGATACGGAGAAA
AGAGTCAAAGGTAGAGAACTTTTAATGTGTAGTAGACATTTTTAATCATT
TAATTTTATTCAGGTCTGGATGGTTTTGATGAACACCAAGAAAGGAGCTC
GGCTGCGTTGTCCTCCGAGGCAGGAGGTTGGTTTTGACGGGAGTAGCAAC
GATGAAGTGAAACAACCTTGAAGCGGTTGGAGGATGTGTCCTCTAGTTCA
GGCTGGTCACTGCTACTCTTAATTCTCGCTCTAGGTTTTGCTGCCCCCTC
TCGCTCTTTATTTTATTGATATGTTTTTCCGCGCACTGTCTTGCCCCCTA
CACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTAGGCT
GTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGCAGAA
GATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCACCAT
GACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTCCATT
GAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGTTAAC
GTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGTTGCT
TCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTAACCC
TCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAGCAAA
AGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGGACGA
GGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAAGGCG
ATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAATGCCA
CGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGCCAGC
ACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAATATGA
ATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTACTAAA
GTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGACCGC
CGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATATTGA
AGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTTCTAT
CGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTAAGAC
GGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTGATTG
TATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCAGTGT
CGGGAAGCCAGGGACTTGGAGCCGATCTGTGTCATCTGCATCGACACCAA
GGACGACCCCCAACAAGCCGTCATTGCCGGCCGCGTCGCCGTTAACCTTG
CTCAAAAAGTACGACTTATCTTGTAACAATGCCTTGATGTTGTGGGATGC
ACTCTTCCCTCCTGCCTCCCTCCTCGAGCAGGATTTGTAGAATTACGTGA
TACGACACCCGCATCCCATGCCTTTTCCTTAACACGCTCCTTTAATTTTC
TTTCCCCCACCCCCTTCTATTCTTCATGCACACACAGCTGGAAGAAAGCG
ATGACCTCGCTACGGACGCCCCCGAGATAGTAGAGACATTCATGGAGGAG
GAAGGAAGGCGGCTGCTCTTCCAGATATGCTACTTGTAGTTTGAATAGCA
TTAGCAGCGACGGACGCGTGCTTAGATGTGACCAGTGCACACAAGCACAT
CAAGAAGGTAGTCAGGCAAGCAAGTAAGGAAAAAAAAAA
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protein sequence of jgi.p|Nanoce1779_2|580628

>mRNA_2514-protein ID=mRNA_2514-protein|Name=jgi.p|Nanoce1779_2|580628|organism=Nannochloropsis oceanica|type=polypeptide|length=248bp
MSTISKRPRHEGESHDDDEDEDEEDELSSDDEEVEQDQGDAGKNGAPVSS
ATSSMPRPDSSNSLSGGGAALPAPSCSKLSYALVCSSNMNRSMEAHAAFL
NAGFTKVVSLGTGRMVRLPAATAEGQVSFSFGTPYTEILKELEGQAQADA
KLQEFYRRTKLLDILRRNARIKTAPERLQNIENLTYDVIVCFDIRVYDAV
QEDLQCREARDLEPICVICIDTKDDPQQAVIAGRVAVNLAQKVRLIL*
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mRNA from alignment at scaffold_5:532957..535128-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2514 ID=mRNA_2514|Name=jgi.p|Nanoce1779_2|580628|organism=Nannochloropsis oceanica|type=mRNA|length=2172bp|location=Sequence derived from alignment at scaffold_5:532957..535128- (Nannochloropsis oceanica)
GGTGGGAATGTGGCGGGGCCCATGTCCATCTCCTCCAGGCGCTTGGTTGT
CGATGACCAAAAGGAGTAGGCCGTGCAGAAACAAGAACAAGGAATAAGAA
GAAGACATTGTTGATATATTATAAAAAGGAGGAAGGGCTTAAGGGTTTAC
TTAGAATGTGCGGACAGGTTTCTGGGACATTAATGGCAGATACGGAGAAA
AGAGTCAAAGGTAGAGAACTTTTAATGTGTAGTAGACATTTTTAATCATT
TAATTTTATTCAGGTCTGGATGGTTTTGATGAACACCAAGAAAGGAGCTC
GGCTGCGTTGTCCTCCGAGGCAGGAGGTTGGTTTTGACGGGAGTAGCAAC
GATGAAGTGAAACAACCTTGAAGCGGTTGGAGGATGTGTCCTCTAGTTCA
GGCTGGTCACTGCTACTCTTAATTCTCGCTCTAGGTTTTGCTGCCCCCTC
TCGCTCTTTATTTTATTGATATGTTTTTCCGCGCACTGTCTTGCCCCCTA
CACACATCCTGTCTCTACCACTCGACCACTCGCAACAGGAGACGTAGGCT
GTACTACACGACCGAGGATCGCACGATGACAAGAGCAGACCACCGCAGAA
GATAGCACGCGCATCCCGCGACCGGCTTAGTGTTCGCAACACTCCACCAT
GACGCTGGCGGTCGGGGTGGAAGGTGGCGTATGAGCCGCCGCGCTCCATT
GAGCCTCGCCGCCGCGAGTACGCGCCACCATTGCCAACCATGTTGTTAAC
GTCTGAATGTTCTGAGCTAGGAGGGGACAGCCTATTGTTGTGCTGTTGCT
TCTGCTTTATCGTATCCAAAGATCATTCGGACGAGGCCATATTCTAACCC
TCTCCGCTAATCCCCCGTTTTACGCAGAGATCATGTCAACAATAAGCAAA
AGACCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGGACGA
GGAGGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAAGGCG
ATGCCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAATGCCA
CGCCCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGCCAGC
ACCGTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAATATGA
ATCGATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTACTAAA
GTAGTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGACCGC
CGAAGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATATTGA
AGGAGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTTCTAT
CGACGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTAAGAC
GGCACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTGATTG
TATGTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCAGGTG
AGTGATGTTGAATGATTTTCCTCCCCATCATCCTTTCTGCTTCCACCCGT
CCTTCATTTGGTCCTTCCTTTCTGCACCAACCTATTCTATCAACGTCTTT
TTGGATGTGACACACTCATGTATCGAAAATCATCTTACCCTTCCTCTCCA
ATCTCCTTTCTCAATTCTCTCCCCAAACAGTGTCGGGAAGCCAGGGACTT
GGAGCCGATCTGTGTCATCTGCATCGACACCAAGGACGACCCCCAACAAG
CCGTCATTGCCGGCCGCGTCGCCGTTAACCTTGCTCAAAAAGTACGACTT
ATCTTGTAACAATGCCTTGATGTTGTGGGATGCACTCTTCCCTCCTGCCT
CCCTCCTCGAGCAGGATTTGTAGAATTACGTGATACGACACCCGCATCCC
ATGCCTTTTCCTTAACACGCTCCTTTAATTTTCTTTCCCCCACCCCCTTC
TATTCTTCATGCACACACAGCTGGAAGAAAGCGATGACCTCGCTACGGAC
GCCCCCGAGATAGTAGAGACATTCATGGAGGAGGAAGGAAGGCGGCTGCT
CTTCCAGATATGCTACTTGTAGTTTGAATAGCATTAGCAGCGACGGACGC
GTGCTTAGATGTGACCAGTGCACACAAGCACATCAAGAAGGTAGTCAGGC
AAGCAAGTAAGGAAAAAAAAAA
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Coding sequence (CDS) from alignment at scaffold_5:532957..535128-

>mRNA_2514 ID=mRNA_2514|Name=jgi.p|Nanoce1779_2|580628|organism=Nannochloropsis oceanica|type=CDS|length=1488bp|location=Sequence derived from alignment at scaffold_5:532957..535128- (Nannochloropsis oceanica)
TGTCGGGAAGCCAGGGACTTGGAGCCGATCTGTGTCATCTGCATCGACAC
CAAGGACGACCCCCAACAAGCCGTCATTGCCGGCCGCGTCGCCGTTAACC
TTGCTCAAAAAGTACGACTTATCTTGTAAATGTCAACAATAAGCAAAAGA
CCACGCCACGAAGGAGAAAGCCACGATGATGACGAGGATGAGGACGAGGA
GGATGAACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAAGGCGATG
CCGGCAAGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAATGCCACGC
CCCGATAGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGCCAGCACC
GTCCTGTTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAATATGAATC
GATCTATGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTACTAAAGTA
GTCAGTCTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGACCGCCGA
AGGGCAAGTGTCGTTCTCATTTGGGACGCCATACACGGAAATATTGAAGG
AGCTAGAGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTTCTATCGA
CGGACCAAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTAAGACGGC
ACCGGAACGGTTGCAGAATATTGAAAACCTGACTTACGATGTGATTGTAT
GTTTTGATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCAGTGTCGG
GAAGCCAGGGACTTGGAGCCGATCTGTGTCATCTGCATCGACACCAAGGA
CGACCCCCAACAAGCCGTCATTGCCGGCCGCGTCGCCGTTAACCTTGCTC
AAAAAGTACGACTTATCTTGTAAATGTCAACAATAAGCAAAAGACCACGC
CACGAAGGAGAAAGCCACGATGATGACGAGGATGAGGACGAGGAGGATGA
ACTGAGCAGTGATGACGAAGAAGTTGAGCAGGACCAAGGCGATGCCGGCA
AGAATGGCGCCCCCGTCTCCTCCGCCACCTCATCAATGCCACGCCCCGAT
AGCAGCAATAGCCTCAGTGGGGGAGGAGCTGCTTTGCCAGCACCGTCCTG
TTCGAAATTGAGTTATGCCTTGGTGTGCTCGAGCAATATGAATCGATCTA
TGGAAGCCCATGCGGCCTTCTTGAACGCAGGCTTTACTAAAGTAGTCAGT
CTGGGAACTGGGAGGATGGTACGTCTGCCGGCCGCGACCGCCGAAGGGCA
AGTGTCGTTCTCATTTGGGACGCCATACACGGAAATATTGAAGGAGCTAG
AGGGACAAGCTCAGGCAGATGCGAAGCTGCAAGAGTTCTATCGACGGACC
AAGTTGTTAGACATTTTGAGGAGGAACGCCAGGATTAAGACGGCACCGGA
ACGGTTGCAGAATATTGAAAACCTGACTTACGATGTGATTGTATGTTTTG
ATATACGCGTTTATGACGCGGTGCAGGAAGATTTGCAG
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Synonyms
Publications