jgi.p|Nanoce1779_2|331062, mRNA_2513 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|331062
Unique Name	mRNA_2513
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1732
Alignment location	scaffold_5:529820..532809 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	331148
Track	FilteredModels2
ProteinId	331062

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:529820..532809 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|331062	gene_2513	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|331062	mRNA_2513-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2513	CDS_2513	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:529820..532809+
coding sequence from alignment at scaffold_5:529820..532809+

mRNA sequence

>mRNA_2513 ID=mRNA_2513|Name=jgi.p|Nanoce1779_2|331062|organism=Nannochloropsis oceanica|type=mRNA|length=1732bp
CAAGACGAGCACCATAGATAGGCGGGTTGGAATACAGAGGCCGAATCAAG
ATCTTCAATTGAGAATCAACACGCTTGGCCTCCTCAGCGCTGGCGCAGAC
CGCGGACAGGGTCCCCACACGCTCCCCGTACAACCCGAAGTTCTTCGCAA
ACGACTGCGCCATCAAGAACGAATGCCCATCAGCCGCAAATTGCCGCAAG
GCAAAAGCATCCTTGTCCGCATTTCCGGAGGCAAAACCCAGTTACAAAAT
GGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGCGC
TGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCCTG
CTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACGGC
CGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAAAA
GACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTCAT
GCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCAGC
GGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCATTA
AAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGAGC
CTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTATCC
TCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGTGC
AAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCCTT
GAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACCAT
CCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTTCA
CCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGCTG
TTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCCCC
TCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTGTA
AGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCGAG
CATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGGGC
ACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTTTG
CACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAATT
TTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTGGC
TTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTTTT
GGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGACT
ATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGAGG
AAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAAAA
TCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGCTC
ACTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTCCAGAAGCGTT
GGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGATTCGAAAGACT
TACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAGAAAGGGCTTCTGCG
ACAAGGATGGAATTTGGAGCGGGTATTGCTGT

protein sequence of jgi.p|Nanoce1779_2|331062

>mRNA_2513-protein ID=mRNA_2513-protein|Name=jgi.p|Nanoce1779_2|331062|organism=Nannochloropsis oceanica|type=polypeptide|length=479bp
MDDKAIGLHWWLPIILALFTTDATGAFTSSSSRLLLHRRGGSTMSAAAST
AVFISESRPGSSNDDGKRRVYYGVDGGGHLVPLHASHKPLSSKTGAAALP
AADELQANAQASTLEPIKSKQIRKIVQNSTIRTSLRLLALLRTIFLPVGY
PHSVRPEYLRYQQWNVVQDLSTYLRGILATQAILEGVGVGRAGATPLAAT
IQWIVRDGTAMMSGLVFTSLLSTNFGVNAKSWRLFADFSVDVGITLDMLA
PLFPKRFLLLICLSSVCKSLCGISAGAANGAIVEHMAQTNNLAEVLAKGG
AQHTAVSLFGLGFGMWFARVANQSPRRVWGAYIILTLVHLIANYAAMRVL
AFTSINRHRLDVLLGSFWAGEGVPLPATVARRETILVNPRRWWWLPGGEG
GRRGGKGSSRSNEPVWKIRLGARVKDLTASVFKLTVVAQGIFSRLLTPEA
LERRRGGERGDVLDSKDLRGGVHELPIV*

mRNA from alignment at scaffold_5:529820..532809+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2513 ID=mRNA_2513|Name=jgi.p|Nanoce1779_2|331062|organism=Nannochloropsis oceanica|type=mRNA|length=2990bp|location=Sequence derived from alignment at scaffold_5:529820..532809+ (Nannochloropsis oceanica)
CAAGACGAGCACCATAGATAGGCGGGTTGGAATACAGAGGCCGAATCAAG
ATCTTCAATTGAGAATCAACACGCTTGGCCTCCTCAGCGCTGGCGCAGAC
CGCGGACAGGGTCCCCACACGCTCCCCGTACAACCCGAAGTTCTTCGCAA
ACGACTGCGCCATCAAGAACGAATGCCCATCAGCCGCAAATTGCCGCAAG
GCAAAAGCATCCTTGTCCGCATTTCCGGAGGCAAAACCCAGGTAGGCTGC
GTCAAAGAGGATGGCATGTCCCCTCTTCTTGAACAGAGCGGAGAGTTCCT
TCCACTGCTCCTCCGAAGGGTCCACCCCCGTGGGGTTATGTGCGCAGGCG
TGCAATAAAAAGATAGAGCCGGTCGGCGCCGAATTCACGTCATCCAACAC
ACCCTTAAAATCCAGCCCATTGGTCTTGGGGTCGAAATACCGGTATTGCT
TCACCTCCAACCCTGCATCCTTGTAGATAGGGATGTGGTTGCCCCACGTC
GGGTCAGGCAGATACAACGGGCTCCCCTTGCCCAAAAAGCGGGCATAGAA
ATCCCCCGCCAACCGGCAGGCGCCCGTGCCCGAGATGGTCTGCACCCCCG
CAATGCGTTTCTCCTTGAGCGCGGCCGAATCGGCGCCATAGGCAAATTCA
AGCGCCAGCCGCACGTATTCACCAACTCCTTGGATGCCGGCGTACTCGTG
GTTCATCTTGGCCTCCAGTACCTTCTTCTCCGCCAGTCGCACCGATTCCA
ACACGTGCGGTTTGCCCTTGTCGTCACGGTAAGCGCCCACCCCGAGGCTG
ACCTTCTTGGGGAAAGCGTCCTTGTTGAAGGCGTCCGTCAACCCAAAGAT
GGGGTCGGGAGGTCCCAGTGGCACGTTTGCAAACGTCGACGCGGCACGGG
CGCCGGCCGCCATGGGCGATAAGAACGACATGCGGCCGCTAGCCAGCGCG
TGACGGGTGCCTGCCCTTCGGATCAAGAGCAGCGTTGCGGTAGACACCAT
TTGGGGCCTATGATCAAGTGGAGTGGAGGGCAACAGTGTGAGATACTTAG
TGGGTGGACCATGTACAGCTTGACCGGCTAAGCCAAGCCAGTCCCACGAG
GATCTCGCCAGCATACTGGGCAAGCTCCTGGTGACTCAAGGAGACCGAGG
ATATTCTTGTAGATACTCCGGAATCGCCTATCGAACGGAGTGCACAAGCA
CACACGCTGGCGCACCGATAAGGGGGAGACTCGGGAGGCACTCTCCAAAT
CGCTGTTTGATGACGCAATGCCTCACTACAACACTTTTTGTGGCACTCTC
ACAAGCCCATCCCAATTCACACACTTCAACATCCGATACAGTTACAAAAT
GGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGCGC
TGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCCTG
CTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACGGC
CGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAAAA
GACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTCAT
GCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCAGC
GGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCATTA
AAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGAGC
CTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTATCC
TCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGTGC
AAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCCTT
GAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACCAT
CCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTTCA
CCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGCTG
TTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCCCC
TCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTGTA
AGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCGAG
CATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGGGC
ACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTTTG
CACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAATT
TTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTGGC
TTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTTTT
GGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGACT
ATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGAGG
AAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAAAA
TCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGCTC
AATGAATTGCAAGAACATTTTCAGGGTGAGTCTTATATGCTTAATGTCGT
AGAAAGTTTCACGACGAGCCAAGACGAAAAAGAGCAGTCGCGAAAAAGAA
AAGGCATCAGCAATACATGGCCGCAGGTAGTGGTAGCCTTGAGAGAAGAT
GCCACAAACCTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTCCA
GAAGCGTTGGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGATTC
GAAAGACTTACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAGAAAGGG
CTTCTGCGACAAGGATGGAATTTGGAGCGGGTATTGCTGT

Coding sequence (CDS) from alignment at scaffold_5:529820..532809+

>mRNA_2513 ID=mRNA_2513|Name=jgi.p|Nanoce1779_2|331062|organism=Nannochloropsis oceanica|type=CDS|length=2874bp|location=Sequence derived from alignment at scaffold_5:529820..532809+ (Nannochloropsis oceanica)
ATGGATGACAAAGCCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGC
GCTGTTTACGACGGATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCC
TGCTTCTTCACCGTCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACG
GCCGTCTTCATCTCAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAA
AAGACGTGTCTACTATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTC
ATGCTTCACATAAGCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCA
GCGGCTGACGAACTCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCAT
TAAAAGCAAACAGATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGA
GCCTGCGGCTGCTGGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTAT
CCTCATAGCGTGCGCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGT
GCAAGACTTGAGCACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCC
TTGAAGGAGTAGGTGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACC
ATCCAATGGATTGTACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTT
CACCTCTCTCCTTAGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGC
TGTTCGCGGACTTTTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCC
CCTCTTTTTCCGAAGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTG
TAAGAGCCTGTGTGGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCG
AGCATATGGCTCAGACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGG
GCACAACATACCGCTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTT
TGCACGGGTGGCAAACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAA
TTTTGACACTTGTCCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTG
GCTTTCACCTCGATCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTT
TTGGGCGGGGGAGGGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGA
CTATACTCGTGAATCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGA
GGAAGAAGAGGAGGAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAA
AATCCGACTAGGGGCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGC
TCACTGTCGTTGCTCAAGGCATCTTTTCACGCCTACTTACTCCAGAAGCG
TTGGAGAGAAGGAGGGGAGGAGAAAGGGGTGACGTCCTTGATTCGAAAGA
CTTACGAGGAGGCGTGCATGAGCTTCCCATTGTTTGAATGGATGACAAAG
CCATAGGGCTGCACTGGTGGCTGCCGATTATCCTAGCGCTGTTTACGACG
GATGCAACGGGTGCTTTTACGAGCAGCAGCAGCCGCCTGCTTCTTCACCG
TCGAGGAGGGTCAACCATGTCTGCAGCTGCCTCCACGGCCGTCTTCATCT
CAGAAAGCCGGCCGGGGAGCTCCAACGACGATGGAAAAAGACGTGTCTAC
TATGGAGTGGACGGAGGCGGGCATTTGGTGCCCCTTCATGCTTCACATAA
GCCACTGTCGTCCAAAACAGGAGCTGCAGCTTTGCCAGCGGCTGACGAAC
TCCAGGCAAATGCTCAAGCGAGCACCCTGGAGCCCATTAAAAGCAAACAG
ATCAGGAAAATTGTTCAAAACAGTACAATTCGCACGAGCCTGCGGCTGCT
GGCGCTCCTGCGGACTATATTTTTACCGGTGGGCTATCCTCATAGCGTGC
GCCCCGAGTACCTCCGGTACCAACAATGGAATGTGGTGCAAGACTTGAGC
ACTTACCTCCGCGGCATATTAGCCACGCAGGCTATCCTTGAAGGAGTAGG
TGTAGGTAGGGCAGGGGCAACGCCCTTGGCAGCGACCATCCAATGGATTG
TACGAGACGGGACCGCGATGATGTCTGGCCTCGTGTTCACCTCTCTCCTT
AGCACCAATTTCGGGGTAAATGCGAAGAGCTGGCGGCTGTTCGCGGACTT
TTCGGTGGATGTGGGTATTACCTTGGACATGCTTGCCCCTCTTTTTCCGA
AGCGCTTTCTCCTTCTCATCTGTCTCTCCTCGGTTTGTAAGAGCCTGTGT
GGGATCTCGGCTGGGGCTGCGAATGGGGCCATAGTCGAGCATATGGCTCA
GACCAACAATCTTGCTGAAGTCCTCGCGAAAGGGGGGGCACAACATACCG
CTGTTAGCCTATTCGGGCTGGGCTTCGGCATGTGGTTTGCACGGGTGGCA
AACCAATCCCCTCGAAGGGTCTGGGGTGCTTATATAATTTTGACACTTGT
CCATTTAATCGCCAACTATGCCGCAATGCGCGTGTTGGCTTTCACCTCGA
TCAACCGTCATAGACTGGATGTTCTGCTTGGATCTTTTTGGGCGGGGGAG
GGTGTACCGTTGCCTGCAACAGTGGCGCGGCGAGAGACTATACTCGTGAA
TCCGAGGAGGTGGTGGTGGTTGCCCGGTGGCGAAGGAGGAAGAAGAGGAG
GAAAGGGGAGCAGTCGCAGCAATGAGCCGGTCTGGAAAATCCGACTAGGG
GCAAGAGTTAAGGACTTGACAGCCTCTGTTTTCAAGCTCACTGTCGTTGC
TCAAGGCATCTTTTCACGCCTACTTACTCCAGAAGCGTTGGAGAGAAGGA
GGGGAGGAGAAAGGGGTGACGTCCTTGATTCGAAAGACTTACGAGGAGGC
GTGCATGAGCTTCCCATTGTTTGA

Synonyms

Publications