jgi.p|Nanoce1779_2|580619, mRNA_2512 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580619
Unique NamemRNA_2512
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1681
Alignment locationscaffold_5:528959..530828 -

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Properties
Property NameValue
TranscriptId580705
TrackFilteredModels2
ProteinId580619
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:528959..530828 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580619gene_2512Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580619mRNA_2512-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2512CDS_2512Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2512 ID=mRNA_2512|Name=jgi.p|Nanoce1779_2|580619|organism=Nannochloropsis oceanica|type=mRNA|length=1681bp
AGGCCCCAAATGGTGTCTACCGCAACGCTGCTCTTGATCCGAAGGGCAGG
CACCCGTCACGCGCTGGCTAGCGGCCGCATGTCGTTCTTATCGCCCATGG
CGGCCGGCGCCCGTGCCGCGTCGACGTTTGCAAACGTGCCACTGGGACCT
CCCGACCCCATCTTTGGGTTGACGGACGCCTTCAACAAGGACGCTTTCCC
CAAGAAGGTCAGCCTCGGGGTGGGCGCTTACCGTGACGACAAGGGCAAAC
CGCACGTGTTGGAATCGGTGCGACTGGCGGAGAAGAAGGTACTGGAGGCC
AAGATGAACCACGAGTACGCCGGCATCCAAGGAGTTGGTGAATACGTGCG
GCTGGCGCTTGAATTTGCCTATGGCGCCGATTCGGCCGCGCTCAAGGAGA
AACGCATTGCGGGGGTGCAGACCATCTCGGGCACGGGCGCCTGCCGGTTG
GCGGGGGATTTCTATGCCCGCTTTTTGGGCAAGGGGAGCCCGTTGTATCT
GCCTGACCCGACGTGGGGCAACCACATCCCTATCTACAAGGATGCAGGGT
TGGAGGTGAAGCAATACCGGTATTTCGACCCCAAGACCAATGGGCTGGAT
TTTAAGGGTGTGTTGGATGACGTGAATTCGGCGCCGACCGGCTCTATCTT
TTTATTGCACGCCTGCGCACATAACCCCACGGGGGTGGACCCTTCGGAGG
AGCAGTGGAAGGAACTCTCCGCTCTGTTCAAGAAGAGGGGACATGCCATC
CTCTTTGACGCAGCCTACCTGGGTTTTGCCTCCGGAAATGCGGACAAGGA
TGCTTTTGCCTTGCGGCAATTTGCGGCTGATGGGCATTCGTTCTTGATGG
CGCAGTCGTTTGCGAAGAACTTCGGGTTGTACGGGGAGCGTGTGGGGACC
CTGTCCGCGGTCTGCGCCAGCGCTGAGGAGGCCAAGCGTGTTGATTCTCA
ATTGAAGATCTTGATTCGGCCTCTGTATTCCAACCCGCCTATCTATGGTG
CTCGTCTTGTGGCCACTATCTTGCAGGACCATGAGCTGAGACCATTGTTC
TACAAGGAATGCAAGGCCATGGCCGACCGTATCATAGAGATGCGCGCCCT
GCTCCGAGCCACACTGGAGAAGTTGGGCTCGAAACTACCGTGGCAGCATG
TGACGGATCAGATTGGTATGTTTTGCTTTACGGGCCTCCGTCCTGCGGAG
GTGGCGGAGCTGAAGGAAAAGTATCACATTTACATCACCAACGACGGTCG
TATCTCCATTGCGGGACTCAACTCCGCTAACGTGCAGTACGTTGCTGAGA
GCTTCCACGCTGTCACTTCCAAGCGTTGAATGGATTGATGCACGTACATG
GTTGGGAACGTCAATAAAACAGTCAATCGGTTAGATGTGGAGAAATGTGC
GCATGTCTCCATTCACAAGGGTTAGAGCCAGGCGGAGGAGGGACCGAGAC
GCGAAGGGCCATGGCATGGGCAGGTCATGTCGATATTCCCCGTCATCTCA
TTTCACATCACTGAAAGGAAAAACCAAGTAGATATCCTATTTTCCGATCC
ATTGCATTTTGACCGTCAATGACGAATCTCGTTGCCCTTCATGGCCTCGA
CATGAATGTTATCTCAATTGTTTTACTTGGCGTCTAATGGGTACAATTCT
GGCGTCATAAATTTTCTCTTGGCGATGTCCA
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protein sequence of jgi.p|Nanoce1779_2|580619

>mRNA_2512-protein ID=mRNA_2512-protein|Name=jgi.p|Nanoce1779_2|580619|organism=Nannochloropsis oceanica|type=polypeptide|length=440bp
MVSTATLLLIRRAGTRHALASGRMSFLSPMAAGARAASTFANVPLGPPDP
IFGLTDAFNKDAFPKKVSLGVGAYRDDKGKPHVLESVRLAEKKVLEAKMN
HEYAGIQGVGEYVRLALEFAYGADSAALKEKRIAGVQTISGTGACRLAGD
FYARFLGKGSPLYLPDPTWGNHIPIYKDAGLEVKQYRYFDPKTNGLDFKG
VLDDVNSAPTGSIFLLHACAHNPTGVDPSEEQWKELSALFKKRGHAILFD
AAYLGFASGNADKDAFALRQFAADGHSFLMAQSFAKNFGLYGERVGTLSA
VCASAEEAKRVDSQLKILIRPLYSNPPIYGARLVATILQDHELRPLFYKE
CKAMADRIIEMRALLRATLEKLGSKLPWQHVTDQIGMFCFTGLRPAEVAE
LKEKYHIYITNDGRISIAGLNSANVQYVAESFHAVTSKR*
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mRNA from alignment at scaffold_5:528959..530828-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2512 ID=mRNA_2512|Name=jgi.p|Nanoce1779_2|580619|organism=Nannochloropsis oceanica|type=mRNA|length=1870bp|location=Sequence derived from alignment at scaffold_5:528959..530828- (Nannochloropsis oceanica)
AGGCCCCAAATGGTGTCTACCGCAACGCTGCTCTTGATCCGAAGGGCAGG
CACCCGTCACGCGCTGGCTAGCGGCCGCATGTCGTTCTTATCGCCCATGG
CGGCCGGCGCCCGTGCCGCGTCGACGTTTGCAAACGTGCCACTGGGACCT
CCCGACCCCATCTTTGGGTTGACGGACGCCTTCAACAAGGACGCTTTCCC
CAAGAAGGTCAGCCTCGGGGTGGGCGCTTACCGTGACGACAAGGGCAAAC
CGCACGTGTTGGAATCGGTGCGACTGGCGGAGAAGAAGGTACTGGAGGCC
AAGATGAACCACGAGTACGCCGGCATCCAAGGAGTTGGTGAATACGTGCG
GCTGGCGCTTGAATTTGCCTATGGCGCCGATTCGGCCGCGCTCAAGGAGA
AACGCATTGCGGGGGTGCAGACCATCTCGGGCACGGGCGCCTGCCGGTTG
GCGGGGGATTTCTATGCCCGCTTTTTGGGCAAGGGGAGCCCGTTGTATCT
GCCTGACCCGACGTGGGGCAACCACATCCCTATCTACAAGGATGCAGGGT
TGGAGGTGAAGCAATACCGGTATTTCGACCCCAAGACCAATGGGCTGGAT
TTTAAGGGTGTGTTGGATGACGTGAATTCGGCGCCGACCGGCTCTATCTT
TTTATTGCACGCCTGCGCACATAACCCCACGGGGGTGGACCCTTCGGAGG
AGCAGTGGAAGGAACTCTCCGCTCTGTTCAAGAAGAGGGGACATGCCATC
CTCTTTGACGCAGCCTACCTGGGTTTTGCCTCCGGAAATGCGGACAAGGA
TGCTTTTGCCTTGCGGCAATTTGCGGCTGATGGGCATTCGTTCTTGATGG
CGCAGTCGTTTGCGAAGAACTTCGGGTTGTACGGGGAGCGTGTGGGGACC
CTGTCCGCGGTCTGCGCCAGCGCTGAGGAGGCCAAGCGTGTTGATTCTCA
ATTGAAGATCTTGATTCGGCCTCTGTATTCCAACCCGCCTATCTATGGTG
CTCGTCTTGTGGCCACTATCTTGCAGGGTAAGTAGCGTCAGTTATTTCAG
GGGGAAGGCGAATGTGTCTAAACGCTATGATTTTGTTTGCATATCTGTCA
GGTGGTTGTAGCTGTGAGTGTGTGGGTACATATGGGAAAGCGAAGCGAAG
CTCGTTCGTAATTCTTTCTCTCACGGCAATCTTCTCACCATACACCTTCT
TCCTCTCCTTATCTAGACCATGAGCTGAGACCATTGTTCTACAAGGAATG
CAAGGCCATGGCCGACCGTATCATAGAGATGCGCGCCCTGCTCCGAGCCA
CACTGGAGAAGTTGGGCTCGAAACTACCGTGGCAGCATGTGACGGATCAG
ATTGGTATGTTTTGCTTTACGGGCCTCCGTCCTGCGGAGGTGGCGGAGCT
GAAGGAAAAGTATCACATTTACATCACCAACGACGGTCGTATCTCCATTG
CGGGACTCAACTCCGCTAACGTGCAGTACGTTGCTGAGAGCTTCCACGCT
GTCACTTCCAAGCGTTGAATGGATTGATGCACGTACATGGTTGGGAACGT
CAATAAAACAGTCAATCGGTTAGATGTGGAGAAATGTGCGCATGTCTCCA
TTCACAAGGGTTAGAGCCAGGCGGAGGAGGGACCGAGACGCGAAGGGCCA
TGGCATGGGCAGGTCATGTCGATATTCCCCGTCATCTCATTTCACATCAC
TGAAAGGAAAAACCAAGTAGATATCCTATTTTCCGATCCATTGCATTTTG
ACCGTCAATGACGAATCTCGTTGCCCTTCATGGCCTCGACATGAATGTTA
TCTCAATTGTTTTACTTGGCGTCTAATGGGTACAATTCTGGCGTCATAAA
TTTTCTCTTGGCGATGTCCA
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Coding sequence (CDS) from alignment at scaffold_5:528959..530828-

>mRNA_2512 ID=mRNA_2512|Name=jgi.p|Nanoce1779_2|580619|organism=Nannochloropsis oceanica|type=CDS|length=2640bp|location=Sequence derived from alignment at scaffold_5:528959..530828- (Nannochloropsis oceanica)
ACCATGAGCTGAGACCATTGTTCTACAAGGAATGCAAGGCCATGGCCGAC
CGTATCATAGAGATGCGCGCCCTGCTCCGAGCCACACTGGAGAAGTTGGG
CTCGAAACTACCGTGGCAGCATGTGACGGATCAGATTGGTATGTTTTGCT
TTACGGGCCTCCGTCCTGCGGAGGTGGCGGAGCTGAAGGAAAAGTATCAC
ATTTACATCACCAACGACGGTCGTATCTCCATTGCGGGACTCAACTCCGC
TAACGTGCAGTACGTTGCTGAGAGCTTCCACGCTGTCACTTCCAAGCGTT
GAATGGTGTCTACCGCAACGCTGCTCTTGATCCGAAGGGCAGGCACCCGT
CACGCGCTGGCTAGCGGCCGCATGTCGTTCTTATCGCCCATGGCGGCCGG
CGCCCGTGCCGCGTCGACGTTTGCAAACGTGCCACTGGGACCTCCCGACC
CCATCTTTGGGTTGACGGACGCCTTCAACAAGGACGCTTTCCCCAAGAAG
GTCAGCCTCGGGGTGGGCGCTTACCGTGACGACAAGGGCAAACCGCACGT
GTTGGAATCGGTGCGACTGGCGGAGAAGAAGGTACTGGAGGCCAAGATGA
ACCACGAGTACGCCGGCATCCAAGGAGTTGGTGAATACGTGCGGCTGGCG
CTTGAATTTGCCTATGGCGCCGATTCGGCCGCGCTCAAGGAGAAACGCAT
TGCGGGGGTGCAGACCATCTCGGGCACGGGCGCCTGCCGGTTGGCGGGGG
ATTTCTATGCCCGCTTTTTGGGCAAGGGGAGCCCGTTGTATCTGCCTGAC
CCGACGTGGGGCAACCACATCCCTATCTACAAGGATGCAGGGTTGGAGGT
GAAGCAATACCGGTATTTCGACCCCAAGACCAATGGGCTGGATTTTAAGG
GTGTGTTGGATGACGTGAATTCGGCGCCGACCGGCTCTATCTTTTTATTG
CACGCCTGCGCACATAACCCCACGGGGGTGGACCCTTCGGAGGAGCAGTG
GAAGGAACTCTCCGCTCTGTTCAAGAAGAGGGGACATGCCATCCTCTTTG
ACGCAGCCTACCTGGGTTTTGCCTCCGGAAATGCGGACAAGGATGCTTTT
GCCTTGCGGCAATTTGCGGCTGATGGGCATTCGTTCTTGATGGCGCAGTC
GTTTGCGAAGAACTTCGGGTTGTACGGGGAGCGTGTGGGGACCCTGTCCG
CGGTCTGCGCCAGCGCTGAGGAGGCCAAGCGTGTTGATTCTCAATTGAAG
ATCTTGATTCGGCCTCTGTATTCCAACCCGCCTATCTATGGTGCTCGTCT
TGTGGCCACTATCTTGCAGGACCATGAGCTGAGACCATTGTTCTACAAGG
AATGCAAGGCCATGGCCGACCGTATCATAGAGATGCGCGCCCTGCTCCGA
GCCACACTGGAGAAGTTGGGCTCGAAACTACCGTGGCAGCATGTGACGGA
TCAGATTGGTATGTTTTGCTTTACGGGCCTCCGTCCTGCGGAGGTGGCGG
AGCTGAAGGAAAAGTATCACATTTACATCACCAACGACGGTCGTATCTCC
ATTGCGGGACTCAACTCCGCTAACGTGCAGTACGTTGCTGAGAGCTTCCA
CGCTGTCACTTCCAAGCGTTGAATGGTGTCTACCGCAACGCTGCTCTTGA
TCCGAAGGGCAGGCACCCGTCACGCGCTGGCTAGCGGCCGCATGTCGTTC
TTATCGCCCATGGCGGCCGGCGCCCGTGCCGCGTCGACGTTTGCAAACGT
GCCACTGGGACCTCCCGACCCCATCTTTGGGTTGACGGACGCCTTCAACA
AGGACGCTTTCCCCAAGAAGGTCAGCCTCGGGGTGGGCGCTTACCGTGAC
GACAAGGGCAAACCGCACGTGTTGGAATCGGTGCGACTGGCGGAGAAGAA
GGTACTGGAGGCCAAGATGAACCACGAGTACGCCGGCATCCAAGGAGTTG
GTGAATACGTGCGGCTGGCGCTTGAATTTGCCTATGGCGCCGATTCGGCC
GCGCTCAAGGAGAAACGCATTGCGGGGGTGCAGACCATCTCGGGCACGGG
CGCCTGCCGGTTGGCGGGGGATTTCTATGCCCGCTTTTTGGGCAAGGGGA
GCCCGTTGTATCTGCCTGACCCGACGTGGGGCAACCACATCCCTATCTAC
AAGGATGCAGGGTTGGAGGTGAAGCAATACCGGTATTTCGACCCCAAGAC
CAATGGGCTGGATTTTAAGGGTGTGTTGGATGACGTGAATTCGGCGCCGA
CCGGCTCTATCTTTTTATTGCACGCCTGCGCACATAACCCCACGGGGGTG
GACCCTTCGGAGGAGCAGTGGAAGGAACTCTCCGCTCTGTTCAAGAAGAG
GGGACATGCCATCCTCTTTGACGCAGCCTACCTGGGTTTTGCCTCCGGAA
ATGCGGACAAGGATGCTTTTGCCTTGCGGCAATTTGCGGCTGATGGGCAT
TCGTTCTTGATGGCGCAGTCGTTTGCGAAGAACTTCGGGTTGTACGGGGA
GCGTGTGGGGACCCTGTCCGCGGTCTGCGCCAGCGCTGAGGAGGCCAAGC
GTGTTGATTCTCAATTGAAGATCTTGATTCGGCCTCTGTATTCCAACCCG
CCTATCTATGGTGCTCGTCTTGTGGCCACTATCTTGCAGG
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Synonyms
Publications