jgi.p|Nanoce1779_2|628555, mRNA_2511 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|628555
Unique NamemRNA_2511
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2073
Alignment locationscaffold_5:526886..528958 -

Link to JBrowse

Properties
Property NameValue
TranscriptId628641
TrackFilteredModels2
ProteinId628555
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:526886..528958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628555gene_2511Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|628555mRNA_2511-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2511CDS_2511Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2511 ID=mRNA_2511|Name=jgi.p|Nanoce1779_2|628555|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp
GGGCCGGGGAGACAGAAGAATGCCGCATCTACAAGGCTTCCGCTCCCATA
GACACACAAGGATGTCAATGATTACACTGTCATGTCGCTTAATTAGGAAG
GAGTGTGCCGGCCGGTCACGGTCGACTTTCTTTTTGCCTTGCCTCACTCC
TTCCGCCCCCACTCAACTCCAGGAGGTTTCTTCTTTCCTTGCTGCAGCTG
CCTCAAGTGGACACACCCAGCAGCCAGACGACGCGCCCGCCCTCCTACAA
ACACACAGACACCCACCATGTCTTCGCGACGGGGACAAGGCATTGGAAAG
AGCGGTAATGTGGGCAGAGGAGATACAGAGACTTCTCGGTTATTGGCGGG
CGAGCGGGCGAGTGGAGGCGGCACCTTTTCGACTACCAGTCCCCAACAAC
AGCAGCACCATGCCCACATCCAGGTATTTTATCAGCAGCAGTACCATCAG
GATCAGCAACAGCAGCAGGGAGCGGGCCCACTGGAGCGCATGATCAAGCG
GGCGCTCCATGGCTTCGCTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCC
TTCTCCTCGTGCTCAAAGGCCTTGGTTTCGACAAAATGTCAGGCTTAGCG
AAACTACCACCGGCCGCGACGAGTTACTTGGCGGTGTTTGTGCCATTCTG
GGTCGCCGATTTTGTGGGCTGGGTCATGGTGGGGCAGACGTTGATTGGCA
CCTGCTCTTTGCGTACCCGGGACGTGCGGGACGACCGGCGACATATGGTC
CGTCTCACGGCCAAGGAGGCCCAAAATACCATCAGCCTTGAAATGTTCCC
TTTGGTGCAAGTCTTGGTCCGGGCTTTGCTAACTGTAACGCCCTTCTTGA
TATGCGTCACGACTGCGCATATCCTGCTTGCCCTGAGCCTGGAGAGGGCC
CAAGTGCCTCTATGGCTAGCGTTAATGCCCCTCGTCATTTGGGATTTTTT
GGCACTACTAAGCACATGGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTC
TTGGGTGGTTTTTGGTCCTTCTTTCCACCTTAACGCTTGGCCTGCGTTTC
TCGACCCCACCACCACAACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGA
CGAAGCCCCGCTCTGGTTAGCATTTACTCCCTTCTGGGCTCTACAAATCC
TCCTCCTCTTCATGCTTCTCTACGTTGCGCTTCAAGCTTGCTGCATCCGT
CGCTACAGACTGACTTCACAGCATGTCGCCTGCTTAGTCTTGTATGCGGG
CAGCCTTGCCCTTCTCACCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACG
ACGCATGGGAGGTAACCTTAGACCACGCCTTGCGCTTTCGGAATTTTTCC
GAGACACTCGCAGGGATTGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCT
GGGACTGTATCTGTTGGCGGCGGAGGAGGCTGAACTTTTAATAACGAGCA
ACGGATACGAAGACCCGATGCCTCTCAGTCGTACAGCCCGTGGATGGGAA
CCAACGGGGGCAGGAGCGTCGAATTGGCTTTTACTTGGGAGGGTAGAGGA
GACAGCGACGTTGATGAGGAGGGGGGGGGTGGCGGGGGCGGTGGGGACCG
CAGCTAATGCGGCTGGTAGGAGAATGGCGGGTGCGGCAAAAGGGGCTTTG
CAGGGAGGGAGGGAAGGAGAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAG
AAGCAATTCGGGTTCGTACGCTGATTTGTATGATGATTTATAGGAGAGGC
TTGAGGGGGGGAGGGAGGAAGAAAGAGTCTCTTGTTCGAGAACATGCTTA
TTGATGTATGGATTTTTTCCCGGTTATGATGGTTTTGATTTGCTCTCTCC
AGAAATGAGTAAAGACTATACGTAAAAAGGGACAAAAGGGGAGAAAGAAA
GACGAGCAGTCCGCGAGGAGGTTCTTCTTCTAGGGTAAGGCAGGTGACAA
CAAAGCACACATGTTTTGAGACTGGGATGAAAAGACAAATCTTGTATTTA
ACCAAAACAAATAGGAAAGCAATATATAATAGAAGGTAAAATTAAAGTAG
CAATTAAACAGTAGGAGCGGCGT
back to top

protein sequence of jgi.p|Nanoce1779_2|628555

>mRNA_2511-protein ID=mRNA_2511-protein|Name=jgi.p|Nanoce1779_2|628555|organism=Nannochloropsis oceanica|type=polypeptide|length=492bp
MSSRRGQGIGKSGNVGRGDTETSRLLAGERASGGGTFSTTSPQQQQHHAH
IQVFYQQQYHQDQQQQQGAGPLERMIKRALHGFALFLSFTFLGVLLLVLK
GLGFDKMSGLAKLPPAATSYLAVFVPFWVADFVGWVMVGQTLIGTCSLRT
RDVRDDRRHMVRLTAKEAQNTISLEMFPLVQVLVRALLTVTPFLICVTTA
HILLALSLERAQVPLWLALMPLVIWDFLALLSTWCLRTGSFSKALGWFLV
LLSTLTLGLRFSTPPPQLLDVAWPVAGDEAPLWLAFTPFWALQILLLFML
LYVALQACCIRRYRLTSQHVACLVLYAGSLALLTLSSVLVAWRHDAWEVT
LDHALRFRNFSETLAGIALFCGVGFGELGLYLLAAEEAELLITSNGYEDP
MPLSRTARGWEPTGAGASNWLLLGRVEETATLMRRGGVAGAVGTAANAAG
RRMAGAAKGALQGGREGESGEGRAELRRSNSGSYADLYDDL*
back to top

mRNA from alignment at scaffold_5:526886..528958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2511 ID=mRNA_2511|Name=jgi.p|Nanoce1779_2|628555|organism=Nannochloropsis oceanica|type=mRNA|length=2073bp|location=Sequence derived from alignment at scaffold_5:526886..528958- (Nannochloropsis oceanica)
GGGCCGGGGAGACAGAAGAATGCCGCATCTACAAGGCTTCCGCTCCCATA
GACACACAAGGATGTCAATGATTACACTGTCATGTCGCTTAATTAGGAAG
GAGTGTGCCGGCCGGTCACGGTCGACTTTCTTTTTGCCTTGCCTCACTCC
TTCCGCCCCCACTCAACTCCAGGAGGTTTCTTCTTTCCTTGCTGCAGCTG
CCTCAAGTGGACACACCCAGCAGCCAGACGACGCGCCCGCCCTCCTACAA
ACACACAGACACCCACCATGTCTTCGCGACGGGGACAAGGCATTGGAAAG
AGCGGTAATGTGGGCAGAGGAGATACAGAGACTTCTCGGTTATTGGCGGG
CGAGCGGGCGAGTGGAGGCGGCACCTTTTCGACTACCAGTCCCCAACAAC
AGCAGCACCATGCCCACATCCAGGTATTTTATCAGCAGCAGTACCATCAG
GATCAGCAACAGCAGCAGGGAGCGGGCCCACTGGAGCGCATGATCAAGCG
GGCGCTCCATGGCTTCGCTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCC
TTCTCCTCGTGCTCAAAGGCCTTGGTTTCGACAAAATGTCAGGCTTAGCG
AAACTACCACCGGCCGCGACGAGTTACTTGGCGGTGTTTGTGCCATTCTG
GGTCGCCGATTTTGTGGGCTGGGTCATGGTGGGGCAGACGTTGATTGGCA
CCTGCTCTTTGCGTACCCGGGACGTGCGGGACGACCGGCGACATATGGTC
CGTCTCACGGCCAAGGAGGCCCAAAATACCATCAGCCTTGAAATGTTCCC
TTTGGTGCAAGTCTTGGTCCGGGCTTTGCTAACTGTAACGCCCTTCTTGA
TATGCGTCACGACTGCGCATATCCTGCTTGCCCTGAGCCTGGAGAGGGCC
CAAGTGCCTCTATGGCTAGCGTTAATGCCCCTCGTCATTTGGGATTTTTT
GGCACTACTAAGCACATGGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTC
TTGGGTGGTTTTTGGTCCTTCTTTCCACCTTAACGCTTGGCCTGCGTTTC
TCGACCCCACCACCACAACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGA
CGAAGCCCCGCTCTGGTTAGCATTTACTCCCTTCTGGGCTCTACAAATCC
TCCTCCTCTTCATGCTTCTCTACGTTGCGCTTCAAGCTTGCTGCATCCGT
CGCTACAGACTGACTTCACAGCATGTCGCCTGCTTAGTCTTGTATGCGGG
CAGCCTTGCCCTTCTCACCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACG
ACGCATGGGAGGTAACCTTAGACCACGCCTTGCGCTTTCGGAATTTTTCC
GAGACACTCGCAGGGATTGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCT
GGGACTGTATCTGTTGGCGGCGGAGGAGGCTGAACTTTTAATAACGAGCA
ACGGATACGAAGACCCGATGCCTCTCAGTCGTACAGCCCGTGGATGGGAA
CCAACGGGGGCAGGAGCGTCGAATTGGCTTTTACTTGGGAGGGTAGAGGA
GACAGCGACGTTGATGAGGAGGGGGGGGGTGGCGGGGGCGGTGGGGACCG
CAGCTAATGCGGCTGGTAGGAGAATGGCGGGTGCGGCAAAAGGGGCTTTG
CAGGGAGGGAGGGAAGGAGAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAG
AAGCAATTCGGGTTCGTACGCTGATTTGTATGATGATTTATAGGAGAGGC
TTGAGGGGGGGAGGGAGGAAGAAAGAGTCTCTTGTTCGAGAACATGCTTA
TTGATGTATGGATTTTTTCCCGGTTATGATGGTTTTGATTTGCTCTCTCC
AGAAATGAGTAAAGACTATACGTAAAAAGGGACAAAAGGGGAGAAAGAAA
GACGAGCAGTCCGCGAGGAGGTTCTTCTTCTAGGGTAAGGCAGGTGACAA
CAAAGCACACATGTTTTGAGACTGGGATGAAAAGACAAATCTTGTATTTA
ACCAAAACAAATAGGAAAGCAATATATAATAGAAGGTAAAATTAAAGTAG
CAATTAAACAGTAGGAGCGGCGT
back to top

Coding sequence (CDS) from alignment at scaffold_5:526886..528958-

>mRNA_2511 ID=mRNA_2511|Name=jgi.p|Nanoce1779_2|628555|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_5:526886..528958- (Nannochloropsis oceanica)
ATGTCTTCGCGACGGGGACAAGGCATTGGAAAGAGCGGTAATGTGGGCAG
AGGAGATACAGAGACTTCTCGGTTATTGGCGGGCGAGCGGGCGAGTGGAG
GCGGCACCTTTTCGACTACCAGTCCCCAACAACAGCAGCACCATGCCCAC
ATCCAGGTATTTTATCAGCAGCAGTACCATCAGGATCAGCAACAGCAGCA
GGGAGCGGGCCCACTGGAGCGCATGATCAAGCGGGCGCTCCATGGCTTCG
CTCTTTTCTTGAGTTTCACTTTCCTAGGTGTCCTTCTCCTCGTGCTCAAA
GGCCTTGGTTTCGACAAAATGTCAGGCTTAGCGAAACTACCACCGGCCGC
GACGAGTTACTTGGCGGTGTTTGTGCCATTCTGGGTCGCCGATTTTGTGG
GCTGGGTCATGGTGGGGCAGACGTTGATTGGCACCTGCTCTTTGCGTACC
CGGGACGTGCGGGACGACCGGCGACATATGGTCCGTCTCACGGCCAAGGA
GGCCCAAAATACCATCAGCCTTGAAATGTTCCCTTTGGTGCAAGTCTTGG
TCCGGGCTTTGCTAACTGTAACGCCCTTCTTGATATGCGTCACGACTGCG
CATATCCTGCTTGCCCTGAGCCTGGAGAGGGCCCAAGTGCCTCTATGGCT
AGCGTTAATGCCCCTCGTCATTTGGGATTTTTTGGCACTACTAAGCACAT
GGTGTCTGCGTACAGGTTCCTTCTCCAAAGCTCTTGGGTGGTTTTTGGTC
CTTCTTTCCACCTTAACGCTTGGCCTGCGTTTCTCGACCCCACCACCACA
ACTGCTCGACGTTGCCTGGCCGGTCGCCGGGGACGAAGCCCCGCTCTGGT
TAGCATTTACTCCCTTCTGGGCTCTACAAATCCTCCTCCTCTTCATGCTT
CTCTACGTTGCGCTTCAAGCTTGCTGCATCCGTCGCTACAGACTGACTTC
ACAGCATGTCGCCTGCTTAGTCTTGTATGCGGGCAGCCTTGCCCTTCTCA
CCCTCTCGTCCGTCCTTGTCGCCTGGCGGCACGACGCATGGGAGGTAACC
TTAGACCACGCCTTGCGCTTTCGGAATTTTTCCGAGACACTCGCAGGGAT
TGCACTCTTTTGTGGGGTGGGTTTTGGGGAGCTGGGACTGTATCTGTTGG
CGGCGGAGGAGGCTGAACTTTTAATAACGAGCAACGGATACGAAGACCCG
ATGCCTCTCAGTCGTACAGCCCGTGGATGGGAACCAACGGGGGCAGGAGC
GTCGAATTGGCTTTTACTTGGGAGGGTAGAGGAGACAGCGACGTTGATGA
GGAGGGGGGGGGTGGCGGGGGCGGTGGGGACCGCAGCTAATGCGGCTGGT
AGGAGAATGGCGGGTGCGGCAAAAGGGGCTTTGCAGGGAGGGAGGGAAGG
AGAGAGTGGAGAAGGAAGGGCGGAGTTGCGAAGAAGCAATTCGGGTTCGT
ACGCTGATTTGTATGATGATTTATAG
back to top
Synonyms
Publications