jgi.p|Nanoce1779_2|668318, mRNA_251 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|668318
Unique NamemRNA_251
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1172
Alignment locationscaffold_3:626656..627928 +

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Properties
Property NameValue
TranscriptId668404
TrackFilteredModels2
ProteinId668318
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:626656..627928 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668318gene_251Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|668318mRNA_251-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_251CDS_251Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_251 ID=mRNA_251|Name=jgi.p|Nanoce1779_2|668318|organism=Nannochloropsis oceanica|type=mRNA|length=1172bp
CAACAGGTACCACATCCTTTTACCGAAGCCGGCGTCTTTGCCAGGACCAG
GCATTCTTGATTGCCTCGAGCCTCCCTACGGCATCAAATCATCTCTATGA
GGGGTCGCGTCCTTCTCCTCTTGCCGTCGTGCTGCTGCCTTATTATGGCC
CTAGCCTCCTGCCTCGTATGGGGACCCATTCTAGGAAAGGCAGCCGCCAG
GGTCCCTCTAGCTGCACCAAGTACCTCAGTTTCGTCGGTACCTCATCTCC
TTACGCAAGTCAAAGGCGGTGTTAAGCCAACGGGGAAACCCGCTGGTGGC
GGTGCGGCGGGCAAGAGGTTGAAGACTGGGTCGGGAGCGGCAGGCACGTC
CAAGGTCAAGCCACCACCCGTTGTGCAAATTATCGATGACGATGATGACG
ACGAGGATGAGGAACAGGATAATGAGGAGGAGTGGGATGAGAATGAGGAT
GAAGATGATGAGAAAGACTATGACGACAAGGAGGAAGACTACGAAGAGGA
GGAGCAGGACGCTCGATGGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGC
CGAATGACTGGCATTACGCAGACAGACGCCGGCGGTTAGCAGCACGGAGA
GGATCCTCGTATGGGGTAGCTGGTTTATTTAAGGGCGCAGCGAAATTGAC
AAGCAATTCTGTAGGAAAGGTAGCGGGGCTCTTCCAACCCAACAAATATG
TGGGTCTGCGGGAAGTGTTGGGATTGTGGAAAGTCAAGCAAAAAATCGCT
CTGCCAGGGGGCGAACCTGAACGATGCGAGGCCACCTTAGAAATCCGAAA
AGATGGCTCAGTTGTCACTTTTTTTGAGGGACACGAGCTAGCTTCCGAGT
TTTTGTTCAAAGAGAGACAGTGGCCTCGGGCTTGTATTATCGAGTTTGAG
GCACGGGCATTCCAGGGTCCATATGACAGGGAGCCTCAGTTGAAATTTTA
CAAAGGGTACGTGCGACGGAGTCTGATGAACGCGGGAGTGGTGCGGTTGG
AGGGGAAGATTTATGAGGTTCAGGGGACATTCTTCTGGCGGCAAAAGAAA
CAGGTGGGTAAATTTAGGGCCCTCAAGAGATGAGGGGGGGAAACAGACGA
GAAAAAAGTCAAATGAACAAGTAGAAATTTAGAGGGAAGAAAATTGAATA
TCATCCGGAGGATTTATCATTA
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protein sequence of jgi.p|Nanoce1779_2|668318

>mRNA_251-protein ID=mRNA_251-protein|Name=jgi.p|Nanoce1779_2|668318|organism=Nannochloropsis oceanica|type=polypeptide|length=329bp
MRGRVLLLLPSCCCLIMALASCLVWGPILGKAAARVPLAAPSTSVSSVPH
LLTQVKGGVKPTGKPAGGGAAGKRLKTGSGAAGTSKVKPPPVVQIIDDDD
DDEDEEQDNEEEWDENEDEDDEKDYDDKEEDYEEEEQDARWGGRGSGSKK
RPNDWHYADRRRRLAARRGSSYGVAGLFKGAAKLTSNSVGKVAGLFQPNK
YVGLREVLGLWKVKQKIALPGGEPERCEATLEIRKDGSVVTFFEGHELAS
EFLFKERQWPRACIIEFEARAFQGPYDREPQLKFYKGYVRRSLMNAGVVR
LEGKIYEVQGTFFWRQKKQVGKFRALKR*
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mRNA from alignment at scaffold_3:626656..627928+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_251 ID=mRNA_251|Name=jgi.p|Nanoce1779_2|668318|organism=Nannochloropsis oceanica|type=mRNA|length=1273bp|location=Sequence derived from alignment at scaffold_3:626656..627928+ (Nannochloropsis oceanica)
CAACAGGTACCACATCCTTTTACCGAAGCCGGCGTCTTTGCCAGGACCAG
GCATTCTTGATTGCCTCGAGCCTCCCTACGGCATCAAATCATCTCTATGA
GGGGTCGCGTCCTTCTCCTCTTGCCGTCGTGCTGCTGCCTTATTATGGCC
CTAGCCTCCTGCCTCGTATGGGGACCCATTCTAGGTACGTGGAAATCTGT
GAGGCATGGGGCATGTCTTCAAAACCTTAGTCCTTCAAGTAGATCACGTC
GTTGTGCTTGACATTTACAACCCCTAATTCTGCAGGAAAGGCAGCCGCCA
GGGTCCCTCTAGCTGCACCAAGTACCTCAGTTTCGTCGGTACCTCATCTC
CTTACGCAAGTCAAAGGCGGTGTTAAGCCAACGGGGAAACCCGCTGGTGG
CGGTGCGGCGGGCAAGAGGTTGAAGACTGGGTCGGGAGCGGCAGGCACGT
CCAAGGTCAAGCCACCACCCGTTGTGCAAATTATCGATGACGATGATGAC
GACGAGGATGAGGAACAGGATAATGAGGAGGAGTGGGATGAGAATGAGGA
TGAAGATGATGAGAAAGACTATGACGACAAGGAGGAAGACTACGAAGAGG
AGGAGCAGGACGCTCGATGGGGTGGACGGGGCAGTGGAAGCAAAAAGCGG
CCGAATGACTGGCATTACGCAGACAGACGCCGGCGGTTAGCAGCACGGAG
AGGATCCTCGTATGGGGTAGCTGGTTTATTTAAGGGCGCAGCGAAATTGA
CAAGCAATTCTGTAGGAAAGGTAGCGGGGCTCTTCCAACCCAACAAATAT
GTGGGTCTGCGGGAAGTGTTGGGATTGTGGAAAGTCAAGCAAAAAATCGC
TCTGCCAGGGGGCGAACCTGAACGATGCGAGGCCACCTTAGAAATCCGAA
AAGATGGCTCAGTTGTCACTTTTTTTGAGGGACACGAGCTAGCTTCCGAG
TTTTTGTTCAAAGAGAGACAGTGGCCTCGGGCTTGTATTATCGAGTTTGA
GGCACGGGCATTCCAGGGTCCATATGACAGGGAGCCTCAGTTGAAATTTT
ACAAAGGGTACGTGCGACGGAGTCTGATGAACGCGGGAGTGGTGCGGTTG
GAGGGGAAGATTTATGAGGTTCAGGGGACATTCTTCTGGCGGCAAAAGAA
ACAGGTGGGTAAATTTAGGGCCCTCAAGAGATGAGGGGGGGAAACAGACG
AGAAAAAAGTCAAATGAACAAGTAGAAATTTAGAGGGAAGAAAATTGAAT
ATCATCCGGAGGATTTATCATTA
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Coding sequence (CDS) from alignment at scaffold_3:626656..627928+

>mRNA_251 ID=mRNA_251|Name=jgi.p|Nanoce1779_2|668318|organism=Nannochloropsis oceanica|type=CDS|length=1974bp|location=Sequence derived from alignment at scaffold_3:626656..627928+ (Nannochloropsis oceanica)
ATGAGGGGTCGCGTCCTTCTCCTCTTGCCGTCGTGCTGCTGCCTTATTAT
GGCCCTAGCCTCCTGCCTCGTATGGGGACCCATTCTAGGAAAGGCAGCCG
CCAGGGTCCCTCTAGCTGCACCAAGTACCTCAGTTTCGTCGGTACCTCAT
CTCCTTACGCAAGTCAAAGGCGGTGTTAAGCCAACGGGGAAACCCGCTGG
TGGCGGTGCGGCGGGCAAGAGGTTGAAGACTGGGTCGGGAGCGGCAGGCA
CGTCCAAGGTCAAGCCACCACCCGTTGTGCAAATTATCGATGACGATGAT
GACGACGAGGATGAGGAACAGGATAATGAGGAGGAGTGGGATGAGAATGA
GGATGAAGATGATGAGAAAGACTATGACGACAAGGAGGAAGACTACGAAG
AGGAGGAGCAGGACGCTCGATGGGGTGGACGGGGCAGTGGAAGCAAAAAG
CGGCCGAATGACTGGCATTACGCAGACAGACGCCGGCGGTTAGCAGCACG
GAGAGGATCCTCGTATGGGGTAGCTGGTTTATTTAAGGGCGCAGCGAAAT
TGACAAGCAATTCTGTAGGAAAGGTAGCGGGGCTCTTCCAACCCAACAAA
TATGTGGGTCTGCGGGAAGTGTTGGGATTGTGGAAAGTCAAGCAAAAAAT
CGCTCTGCCAGGGGGCGAACCTGAACGATGCGAGGCCACCTTAGAAATCC
GAAAAGATGGCTCAGTTGTCACTTTTTTTGAGGGACACGAGCTAGCTTCC
GAGTTTTTGTTCAAAGAGAGACAGTGGCCTCGGGCTTGTATTATCGAGTT
TGAGGCACGGGCATTCCAGGGTCCATATGACAGGGAGCCTCAGTTGAAAT
TTTACAAAGGGTACGTGCGACGGAGTCTGATGAACGCGGGAGTGGTGCGG
TTGGAGGGGAAGATTTATGAGGTTCAGGGGACATTCTTCTGGCGGCAAAA
GAAACAGGTGGGTAAATTTAGGGCCCTCAAGAGATGAATGAGGGGTCGCG
TCCTTCTCCTCTTGCCGTCGTGCTGCTGCCTTATTATGGCCCTAGCCTCC
TGCCTCGTATGGGGACCCATTCTAGGAAAGGCAGCCGCCAGGGTCCCTCT
AGCTGCACCAAGTACCTCAGTTTCGTCGGTACCTCATCTCCTTACGCAAG
TCAAAGGCGGTGTTAAGCCAACGGGGAAACCCGCTGGTGGCGGTGCGGCG
GGCAAGAGGTTGAAGACTGGGTCGGGAGCGGCAGGCACGTCCAAGGTCAA
GCCACCACCCGTTGTGCAAATTATCGATGACGATGATGACGACGAGGATG
AGGAACAGGATAATGAGGAGGAGTGGGATGAGAATGAGGATGAAGATGAT
GAGAAAGACTATGACGACAAGGAGGAAGACTACGAAGAGGAGGAGCAGGA
CGCTCGATGGGGTGGACGGGGCAGTGGAAGCAAAAAGCGGCCGAATGACT
GGCATTACGCAGACAGACGCCGGCGGTTAGCAGCACGGAGAGGATCCTCG
TATGGGGTAGCTGGTTTATTTAAGGGCGCAGCGAAATTGACAAGCAATTC
TGTAGGAAAGGTAGCGGGGCTCTTCCAACCCAACAAATATGTGGGTCTGC
GGGAAGTGTTGGGATTGTGGAAAGTCAAGCAAAAAATCGCTCTGCCAGGG
GGCGAACCTGAACGATGCGAGGCCACCTTAGAAATCCGAAAAGATGGCTC
AGTTGTCACTTTTTTTGAGGGACACGAGCTAGCTTCCGAGTTTTTGTTCA
AAGAGAGACAGTGGCCTCGGGCTTGTATTATCGAGTTTGAGGCACGGGCA
TTCCAGGGTCCATATGACAGGGAGCCTCAGTTGAAATTTTACAAAGGGTA
CGTGCGACGGAGTCTGATGAACGCGGGAGTGGTGCGGTTGGAGGGGAAGA
TTTATGAGGTTCAGGGGACATTCTTCTGGCGGCAAAAGAAACAGGTGGGT
AAATTTAGGGCCCTCAAGAGATGA
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Synonyms
Publications