jgi.p|Nanoce1779_2|580610, mRNA_2509 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580610
Unique Name	mRNA_2509
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1852
Alignment location	scaffold_5:523359..525678 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580696
Track	FilteredModels2
ProteinId	580610

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:523359..525678 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580610	gene_2509	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580610	mRNA_2509-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2509	CDS_2509	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:523359..525678+
coding sequence from alignment at scaffold_5:523359..525678+

mRNA sequence

>mRNA_2509 ID=mRNA_2509|Name=jgi.p|Nanoce1779_2|580610|organism=Nannochloropsis oceanica|type=mRNA|length=1852bp
ACAGGAAATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCT
CCGTGGTGGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGTC
CGCGTGCAGGCAGGCGCGTCGTCCGTGAAGGGCACGCAGCCGGCCGGAAA
TGGTCGCAAGGTCTTGGCGCACTACATCAAGAAGCTGAAGGAGGGTGGAT
ACCCTGAGAAGGCCGCCGACAAGCAATTTGCCGACTACACCGACCGTGAG
CTGGACGCGCTGTTCGATCTAACCATCGACGAGTACGACAAGATGGTGGA
GGATTCTTTCAATGAGATCGGAACCTTCACCCTCTCCGATGATGATGTGA
AGGACGTGATCCAGGACGCGCTCAAGGCGTCCGAGGGCGGGGAGAAGGCT
TCCCCCCTGGGTATCAAGGCGGACTATGGCGGTGCTCAGGATGTGCTTCT
CATGCTTGGCCTTGCGTTCGAGCGTGTGTCGTCCAAGATGAGCTCGGGTG
GCGCGAAGGGCGCCGACGGTACTAAGTATCTGTTCATGACCGATGCGCAG
CTGTCTAAGTTTGACAAGGACTGTGACGCGTTGGTGACGGACATCGAGAG
CCACTTCGCGAATGCCATGAAGCCTATCGACGATAAGATCGACCATTGGG
AGAAGGAGTTCAAGGTATGGGAGACAGACCCGGTCAAGTATACCGACATG
CTGGGCGAGATCCCCGAGGGGCTGGACCAGGAGGCCTTCCTCAAGTCTTT
CCCGGGCTATGCTGACTACGCCGATACTTGGAGTGATGATAATTGAGCGC
GTTTTGGTGCTCTAGGAGGAAGGTGATGGTGGGAGTGAAAGGAGAGAGGC
CGTGGCACCTTGAGGTTCGGACAAGTTATTTTATTTCCACATATATGCGT
TCTCGGCAGCTGTGGCAACAGCGATGAAAACGTTATAAGAGCATTATCAA
AGAAGGCGACTGTCTGCCCTATGCGATTTCTTGGCGCAGAATACAAATGG
AGTGTTTGTATGTGTGGTTGTGTGCATGTGTGCGTGTCCGTACTTCGCTG
ACTCAAGCAATATATTTTCCGAAGGGGGGAGATTGTCCTGTTTGTGTCTG
TTTGAATGCTAATCTACAAGATGAGCGCGCGTATATTGTTGTTGTCCTTG
CTTGACTTTTCTCGAAAGCTGAGGATCAAGAGCGAATATAAACACAAACA
CACTATACAACGGGGAGGGATGCTTCTATAATAAAAGAAACCCAAAAAAA
ATAACAACAGAGAAAAGAATAAAACACTTTCTTACTTGCTTATTCACGAA
AGCTGAGGATCAAGAGCGTATATAAACACACACTTCAACGGGGAGGGGTG
CTTCTATTATAAAAGAAACCCCCCCCCAAAAAACAGAGGAAAGCATAAAA
CATTTTCTGTAGCTTGAGCAGGTGGAAATCAGGCTCGTCCTGATGCTGTC
CCAATCACACGTTGGACAACTTTTCTGCGCGAAAAAGGCCTGCACAACTA
AAAAGTTGAATTAGTTGTCATTAGTTGTCATAGTTGTGCCTTTAGTTGTA
GTTGTGCATGATCTCCGGGAGAGACAACTAACTCAACTATTAGTGGTGCG
TATGATCTCAAGGAGGGACAACTATGACAACTATAAGTTGTGCATGTCTC
CACCCTCCCACAGCTACGACAACTATTAGTTGTGCATCTTTCCACTTTCT
CACAACTATGACAACTATTAGTTGTGCACAATCGCAGGACGGGACAACTG
ACAACTAATTAAGTAGTTGTTGTAGTTGTCCAAAGTGTGGTCCCAATTAC
GTTTTCATCACGTATGCATTCGTATGTTTTCGATTGTATGTCCCCTCGAG
CT

protein sequence of jgi.p|Nanoce1779_2|580610

>mRNA_2509-protein ID=mRNA_2509-protein|Name=jgi.p|Nanoce1779_2|580610|organism=Nannochloropsis oceanica|type=polypeptide|length=263bp
MRLYSFLVGASLMGSVVGFMPSMRVQQRGLVRVQAGASSVKGTQPAGNGR
KVLAHYIKKLKEGGYPEKAADKQFADYTDRELDALFDLTIDEYDKMVEDS
FNEIGTFTLSDDDVKDVIQDALKASEGGEKASPLGIKADYGGAQDVLLML
GLAFERVSSKMSSGGAKGADGTKYLFMTDAQLSKFDKDCDALVTDIESHF
ANAMKPIDDKIDHWEKEFKVWETDPVKYTDMLGEIPEGLDQEAFLKSFPG
YADYADTWSDDN*

mRNA from alignment at scaffold_5:523359..525678+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2509 ID=mRNA_2509|Name=jgi.p|Nanoce1779_2|580610|organism=Nannochloropsis oceanica|type=mRNA|length=2320bp|location=Sequence derived from alignment at scaffold_5:523359..525678+ (Nannochloropsis oceanica)
ACAGGAAATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCT
CCGTGGTGGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGGT
AAGAGACACACTGGGGTTGGAGAGGGTGGGTGGGATGGACTCTTCTCGGT
CTGTAGGGGGTTGTTATCGACCGCATCATAGACGGGAACGGACAGTGGTT
TAAAACAAGCCAGCACAGGTGGAGAGGATGAAAGGGAGCTGGTGTGGCTG
CCTCGTTGGGGGAGCTTTCGATGTCAGTCAGCCGCGGACGAACATGAGGA
CGGAGGGCCACTCAAGTGGTCTCGATCATGTCGTTCAGTCGAGTAGAAAA
GCAGTTATATGTATGGAATCATGCTTCCAGAATTCGAGTAGAGCATGCGT
TAGCGGAGGCGGGGTTTGAAAGCCGGGATGAAAGCCTGCTTTCCTCTATA
AGTGTGTTTTATTGACGAATCTCTCTTTCTCTCCCCTCTATTTCTCTCCC
CCCTCTTTCTCTCTACAACCGCTTATTTTCCTTCTTTTTTCCTTCCCTGT
CTCCAATCCTTCACAGTCCGCGTGCAGGCAGGCGCGTCGTCCGTGAAGGG
CACGCAGCCGGCCGGAAATGGTCGCAAGGTCTTGGCGCACTACATCAAGA
AGCTGAAGGAGGGTGGATACCCTGAGAAGGCCGCCGACAAGCAATTTGCC
GACTACACCGACCGTGAGCTGGACGCGCTGTTCGATCTAACCATCGACGA
GTACGACAAGATGGTGGAGGATTCTTTCAATGAGATCGGAACCTTCACCC
TCTCCGATGATGATGTGAAGGACGTGATCCAGGACGCGCTCAAGGCGTCC
GAGGGCGGGGAGAAGGCTTCCCCCCTGGGTATCAAGGCGGACTATGGCGG
TGCTCAGGATGTGCTTCTCATGCTTGGCCTTGCGTTCGAGCGTGTGTCGT
CCAAGATGAGCTCGGGTGGCGCGAAGGGCGCCGACGGTACTAAGTATCTG
TTCATGACCGATGCGCAGCTGTCTAAGTTTGACAAGGACTGTGACGCGTT
GGTGACGGACATCGAGAGCCACTTCGCGAATGCCATGAAGCCTATCGACG
ATAAGATCGACCATTGGGAGAAGGAGTTCAAGGTATGGGAGACAGACCCG
GTCAAGTATACCGACATGCTGGGCGAGATCCCCGAGGGGCTGGACCAGGA
GGCCTTCCTCAAGTCTTTCCCGGGCTATGCTGACTACGCCGATACTTGGA
GTGATGATAATTGAGCGCGTTTTGGTGCTCTAGGAGGAAGGTGATGGTGG
GAGTGAAAGGAGAGAGGCCGTGGCACCTTGAGGTTCGGACAAGTTATTTT
ATTTCCACATATATGCGTTCTCGGCAGCTGTGGCAACAGCGATGAAAACG
TTATAAGAGCATTATCAAAGAAGGCGACTGTCTGCCCTATGCGATTTCTT
GGCGCAGAATACAAATGGAGTGTTTGTATGTGTGGTTGTGTGCATGTGTG
CGTGTCCGTACTTCGCTGACTCAAGCAATATATTTTCCGAAGGGGGGAGA
TTGTCCTGTTTGTGTCTGTTTGAATGCTAATCTACAAGATGAGCGCGCGT
ATATTGTTGTTGTCCTTGCTTGACTTTTCTCGAAAGCTGAGGATCAAGAG
CGAATATAAACACAAACACACTATACAACGGGGAGGGATGCTTCTATAAT
AAAAGAAACCCAAAAAAAATAACAACAGAGAAAAGAATAAAACACTTTCT
TACTTGCTTATTCACGAAAGCTGAGGATCAAGAGCGTATATAAACACACA
CTTCAACGGGGAGGGGTGCTTCTATTATAAAAGAAACCCCCCCCCAAAAA
ACAGAGGAAAGCATAAAACATTTTCTGTAGCTTGAGCAGGTGGAAATCAG
GCTCGTCCTGATGCTGTCCCAATCACACGTTGGACAACTTTTCTGCGCGA
AAAAGGCCTGCACAACTAAAAAGTTGAATTAGTTGTCATTAGTTGTCATA
GTTGTGCCTTTAGTTGTAGTTGTGCATGATCTCCGGGAGAGACAACTAAC
TCAACTATTAGTGGTGCGTATGATCTCAAGGAGGGACAACTATGACAACT
ATAAGTTGTGCATGTCTCCACCCTCCCACAGCTACGACAACTATTAGTTG
TGCATCTTTCCACTTTCTCACAACTATGACAACTATTAGTTGTGCACAAT
CGCAGGACGGGACAACTGACAACTAATTAAGTAGTTGTTGTAGTTGTCCA
AAGTGTGGTCCCAATTACGTTTTCATCACGTATGCATTCGTATGTTTTCG
ATTGTATGTCCCCTCGAGCT

Coding sequence (CDS) from alignment at scaffold_5:523359..525678+

>mRNA_2509 ID=mRNA_2509|Name=jgi.p|Nanoce1779_2|580610|organism=Nannochloropsis oceanica|type=CDS|length=1578bp|location=Sequence derived from alignment at scaffold_5:523359..525678+ (Nannochloropsis oceanica)
ATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGT
GGGCTTCATGCCTAGCATGCGCGTCCAGCAACGCGGCCTTGTCCGCGTGC
AGGCAGGCGCGTCGTCCGTGAAGGGCACGCAGCCGGCCGGAAATGGTCGC
AAGGTCTTGGCGCACTACATCAAGAAGCTGAAGGAGGGTGGATACCCTGA
GAAGGCCGCCGACAAGCAATTTGCCGACTACACCGACCGTGAGCTGGACG
CGCTGTTCGATCTAACCATCGACGAGTACGACAAGATGGTGGAGGATTCT
TTCAATGAGATCGGAACCTTCACCCTCTCCGATGATGATGTGAAGGACGT
GATCCAGGACGCGCTCAAGGCGTCCGAGGGCGGGGAGAAGGCTTCCCCCC
TGGGTATCAAGGCGGACTATGGCGGTGCTCAGGATGTGCTTCTCATGCTT
GGCCTTGCGTTCGAGCGTGTGTCGTCCAAGATGAGCTCGGGTGGCGCGAA
GGGCGCCGACGGTACTAAGTATCTGTTCATGACCGATGCGCAGCTGTCTA
AGTTTGACAAGGACTGTGACGCGTTGGTGACGGACATCGAGAGCCACTTC
GCGAATGCCATGAAGCCTATCGACGATAAGATCGACCATTGGGAGAAGGA
GTTCAAGGTATGGGAGACAGACCCGGTCAAGTATACCGACATGCTGGGCG
AGATCCCCGAGGGGCTGGACCAGGAGGCCTTCCTCAAGTCTTTCCCGGGC
TATGCTGACTACGCCGATACTTGGAGTGATGATAATTGAATGAGGCTGTA
TTCCTTCCTCGTGGGGGCTTCTCTCATGGGCTCCGTGGTGGGCTTCATGC
CTAGCATGCGCGTCCAGCAACGCGGCCTTGTCCGCGTGCAGGCAGGCGCG
TCGTCCGTGAAGGGCACGCAGCCGGCCGGAAATGGTCGCAAGGTCTTGGC
GCACTACATCAAGAAGCTGAAGGAGGGTGGATACCCTGAGAAGGCCGCCG
ACAAGCAATTTGCCGACTACACCGACCGTGAGCTGGACGCGCTGTTCGAT
CTAACCATCGACGAGTACGACAAGATGGTGGAGGATTCTTTCAATGAGAT
CGGAACCTTCACCCTCTCCGATGATGATGTGAAGGACGTGATCCAGGACG
CGCTCAAGGCGTCCGAGGGCGGGGAGAAGGCTTCCCCCCTGGGTATCAAG
GCGGACTATGGCGGTGCTCAGGATGTGCTTCTCATGCTTGGCCTTGCGTT
CGAGCGTGTGTCGTCCAAGATGAGCTCGGGTGGCGCGAAGGGCGCCGACG
GTACTAAGTATCTGTTCATGACCGATGCGCAGCTGTCTAAGTTTGACAAG
GACTGTGACGCGTTGGTGACGGACATCGAGAGCCACTTCGCGAATGCCAT
GAAGCCTATCGACGATAAGATCGACCATTGGGAGAAGGAGTTCAAGGTAT
GGGAGACAGACCCGGTCAAGTATACCGACATGCTGGGCGAGATCCCCGAG
GGGCTGGACCAGGAGGCCTTCCTCAAGTCTTTCCCGGGCTATGCTGACTA
CGCCGATACTTGGAGTGATGATAATTGA

Synonyms

Publications