jgi.p|Nanoce1779_2|628553, mRNA_2508 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|628553
Unique Name	mRNA_2508
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2227
Alignment location	scaffold_5:521007..523404 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	628639
Track	FilteredModels2
ProteinId	628553

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:521007..523404 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628553	gene_2508	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|628553	mRNA_2508-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2508	CDS_2508	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:521007..523404+
coding sequence from alignment at scaffold_5:521007..523404+

mRNA sequence

>mRNA_2508 ID=mRNA_2508|Name=jgi.p|Nanoce1779_2|628553|organism=Nannochloropsis oceanica|type=mRNA|length=2227bp
ACAGGCACCTTCCCACCACATTTCCCAAAACCATAATTTCAAGATGTCTG
AGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACATCGCCTAT
GTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGCTCAAGTC
GTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAATCGCAAGA
AGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCTCAATGGT
GTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTGTCTTGAA
GGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGCGAGACCT
TGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTTGAAGGAG
GTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGGAGAACCC
TGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACTTTGTCTT
CTTATATGCTGTATGCCAAGGACGTCCGTGCTGAGGTGGTAGCAGAGTTC
CCCGCTCTCAAAGTCACAGAAATTGGGAGTAAGATCGGCGAGAAATGGAG
AGGGTTAAGCGAGGAGGAAAAGGCCAAGTACACGGCCAAGGCCGCAAAGC
TAAAGGCGGATGCCAACAAGTAAGGTAGGATAGGAGAAGTGCTACTGCTG
TTGGTGCCGCTGTCTCAGGGAGGATGGTTGGAGGAAGGGAATTGAAAAGG
GGAGGATAGCGCATAGATGTTAACACAGCTAGATAGCTTTGTTATACACC
GAAGGAAGATTGAGAGACAGGGTGTCGAAGACAGACAGAGAAATAGAAAG
ACAGAAGGACAGAATCTAAGCACTACCACCCCACTGGATAAACAGAACTA
CTAGCGGTGCAGGAAAGTTTGGGAAAGGAAGAGATTAGAAAAGAAACAGA
TGACATTGCAGGACTAGAAAAGAGAGGATGTTCGAATTTCGGAATGTGAG
TTTCTTGTGGGGCTCAGTCCAAGACAGACAAAGGGAGACAGGGGAGGATG
GAATGCCGTGCTGAAAAAGAGCCACAATGAGGGTTAATTCTTCATGCCCA
CAGCTTTTCCTGGCTGATTTTGTGTTCCCTGTGCTCAAGAAACCCTAGAG
CGGATGGTAGGGGGGGGGAGGGGGGAGTGATTTGTACAATTGCTTTTGGA
AAGGGGATGGGAAGGCGGGATACCTGTCGCCAGGAATTGGAGAGACCGAT
ATTCGCAGGACTGCTCTCTTTATTGAAGTTTAGCGTTGACATGCACGGTT
TCTCTTTGCACGGCGTCTTCCACGTTTAGAACACTTGTCACAATGTCTAT
GCGGCAGCAATCTCTTCTTTCCCGGTTCTGTACGGGGTCGTGCAGGCACG
AATGCTACCTTAGCTTTTCTTGCCTCCCATACCTTTGCATGCCAATCTTC
CCATGTCCATATCTCTAAATTATGGACAATACCGAGCCAAAAGCGCAGCA
CTACCTTACCTATAGACAGGACACATGGGCCGCTCCCCCTCGCCACGCTC
CGCAAGCAAATCGGGTTCTGCCAAACATGACATGCAACTTTTGCACGAAA
TCAAGTACCATGGCCACACACACAACTCAAATGGTGTACTAACTATTTCC
ACGCATGCTGCGTGCTTTATGATCGCAGGACAGGCCGACTAACGACTACT
TCACGACTTCACGCAAAACGTGCTCGCGGTGCTCTAGATTTTAGCTCATC
CTTTCCCGTGGTCTTTGCCATTGTGCAATCCGCAAATCTGGGTATCCCAA
GCCCAGGTCTGTGGTCACGCCTCTACATGGTGTCTAGTTTGGGGAGCGAG
GGCGCTTGTGAGGGCACGAACTGCCCTGGGACCCATGATTGGAGGAAGCA
AGCGACTGCAAGCCAAGACCTCTCCTCAATCAATCTAACTTCCCTCTTCC
CCTTGCTCCTCGAGGGCAAAGTGACCAAATGTTCATGCCATTGTGTCTAG
CACCATCAAGGTGCGGCGTACATTCGGGCAGCTCAGTGCGAGGCAAGGAC
TCGTGGAAATTGATTGAATGGCTGCGGCAAACCAATTCACGGGTCGCACC
CCGTCGTTTGCACGAGAAGCAGACGTGTAAAAAAATCACAAACCCCATGC
ATTCTCTTCCTCCCCAAACACGCCCACCCACACAGGAAATGAGGCTGTAT
TCCTTCCTCGTGGGGGCTTCTCTCATG

protein sequence of jgi.p|Nanoce1779_2|628553

>mRNA_2508-protein ID=mRNA_2508-protein|Name=jgi.p|Nanoce1779_2|628553|organism=Nannochloropsis oceanica|type=polypeptide|length=210bp
MSETQGGGGSGSALGHIAYVQSMLTKLPNDHDLLKSLHMLMYKTPGTKLN
RKKTIRAFNGFPAGTDLNGVTDRISGNRKWTVTVLKDAATLFGLEKGGDR
ETLIGRLVKYLNKPVTLKEVGSTAGASSKKKSRENPAAMAKKGSDGVKRT
LSSYMLYAKDVRAEVVAEFPALKVTEIGSKIGEKWRGLSEEEKAKYTAKA
AKLKADANK*

mRNA from alignment at scaffold_5:521007..523404+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2508 ID=mRNA_2508|Name=jgi.p|Nanoce1779_2|628553|organism=Nannochloropsis oceanica|type=mRNA|length=2398bp|location=Sequence derived from alignment at scaffold_5:521007..523404+ (Nannochloropsis oceanica)
ACAGGCACCTTCCCACCACATTTCCCAAAACCATAATTTCAAGATGTCTG
AGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACATCGCCTAT
GTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGCTCAAGTC
GTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAATCGCAAGA
AGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCTCAATGGT
GTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTGTCTTGAA
GGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGCGAGACCT
TGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTTGAAGGAG
GTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGGAGAACCC
TGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACTTTGTCTT
CTTATATGGTGAGAAAGCTGAGGGGAGGGAGGGAGAAAGGAAGGATGTTT
GGCGGATCAGGGGAGGGGGAAAGAGCAAAGGTGGCACTCACCATCCATAT
GTAAACACACGTATAACGTCTCACTCATTATCTTCGTGAAATCTTTCTTT
TTCTTCTTTTATTTGTCTCCAACTTACAGCTGTATGCCAAGGACGTCCGT
GCTGAGGTGGTAGCAGAGTTCCCCGCTCTCAAAGTCACAGAAATTGGGAG
TAAGATCGGCGAGAAATGGAGAGGGTTAAGCGAGGAGGAAAAGGCCAAGT
ACACGGCCAAGGCCGCAAAGCTAAAGGCGGATGCCAACAAGTAAGGTAGG
ATAGGAGAAGTGCTACTGCTGTTGGTGCCGCTGTCTCAGGGAGGATGGTT
GGAGGAAGGGAATTGAAAAGGGGAGGATAGCGCATAGATGTTAACACAGC
TAGATAGCTTTGTTATACACCGAAGGAAGATTGAGAGACAGGGTGTCGAA
GACAGACAGAGAAATAGAAAGACAGAAGGACAGAATCTAAGCACTACCAC
CCCACTGGATAAACAGAACTACTAGCGGTGCAGGAAAGTTTGGGAAAGGA
AGAGATTAGAAAAGAAACAGATGACATTGCAGGACTAGAAAAGAGAGGAT
GTTCGAATTTCGGAATGTGAGTTTCTTGTGGGGCTCAGTCCAAGACAGAC
AAAGGGAGACAGGGGAGGATGGAATGCCGTGCTGAAAAAGAGCCACAATG
AGGGTTAATTCTTCATGCCCACAGCTTTTCCTGGCTGATTTTGTGTTCCC
TGTGCTCAAGAAACCCTAGAGCGGATGGTAGGGGGGGGGAGGGGGGAGTG
ATTTGTACAATTGCTTTTGGAAAGGGGATGGGAAGGCGGGATACCTGTCG
CCAGGAATTGGAGAGACCGATATTCGCAGGACTGCTCTCTTTATTGAAGT
TTAGCGTTGACATGCACGGTTTCTCTTTGCACGGCGTCTTCCACGTTTAG
AACACTTGTCACAATGTCTATGCGGCAGCAATCTCTTCTTTCCCGGTTCT
GTACGGGGTCGTGCAGGCACGAATGCTACCTTAGCTTTTCTTGCCTCCCA
TACCTTTGCATGCCAATCTTCCCATGTCCATATCTCTAAATTATGGACAA
TACCGAGCCAAAAGCGCAGCACTACCTTACCTATAGACAGGACACATGGG
CCGCTCCCCCTCGCCACGCTCCGCAAGCAAATCGGGTTCTGCCAAACATG
ACATGCAACTTTTGCACGAAATCAAGTACCATGGCCACACACACAACTCA
AATGGTGTACTAACTATTTCCACGCATGCTGCGTGCTTTATGATCGCAGG
ACAGGCCGACTAACGACTACTTCACGACTTCACGCAAAACGTGCTCGCGG
TGCTCTAGATTTTAGCTCATCCTTTCCCGTGGTCTTTGCCATTGTGCAAT
CCGCAAATCTGGGTATCCCAAGCCCAGGTCTGTGGTCACGCCTCTACATG
GTGTCTAGTTTGGGGAGCGAGGGCGCTTGTGAGGGCACGAACTGCCCTGG
GACCCATGATTGGAGGAAGCAAGCGACTGCAAGCCAAGACCTCTCCTCAA
TCAATCTAACTTCCCTCTTCCCCTTGCTCCTCGAGGGCAAAGTGACCAAA
TGTTCATGCCATTGTGTCTAGCACCATCAAGGTGCGGCGTACATTCGGGC
AGCTCAGTGCGAGGCAAGGACTCGTGGAAATTGATTGAATGGCTGCGGCA
AACCAATTCACGGGTCGCACCCCGTCGTTTGCACGAGAAGCAGACGTGTA
AAAAAATCACAAACCCCATGCATTCTCTTCCTCCCCAAACACGCCCACCC
ACACAGGAAATGAGGCTGTATTCCTTCCTCGTGGGGGCTTCTCTCATG

Coding sequence (CDS) from alignment at scaffold_5:521007..523404+

>mRNA_2508 ID=mRNA_2508|Name=jgi.p|Nanoce1779_2|628553|organism=Nannochloropsis oceanica|type=CDS|length=1260bp|location=Sequence derived from alignment at scaffold_5:521007..523404+ (Nannochloropsis oceanica)
ATGTCTGAGACACAAGGTGGCGGCGGCTCGGGATCAGCCCTTGGGCACAT
CGCCTATGTCCAATCCATGCTAACCAAGCTGCCGAACGACCATGACTTGC
TCAAGTCGTTGCATATGCTGATGTACAAAACTCCGGGCACTAAACTTAAT
CGCAAGAAGACCATCAGGGCCTTCAACGGCTTCCCTGCCGGGACGGATCT
CAATGGTGTTACGGACCGAATTTCAGGAAATAGAAAGTGGACTGTGACTG
TCTTGAAGGATGCCGCCACTTTGTTTGGGTTGGAGAAGGGGGGGGATCGC
GAGACCTTGATAGGACGTCTGGTGAAGTACCTGAATAAGCCAGTGACGTT
GAAGGAGGTCGGGTCGACCGCTGGAGCGAGCAGCAAGAAGAAGAGCAGGG
AGAACCCTGCGGCCATGGCCAAGAAGGGGAGTGATGGCGTGAAGCGCACT
TTGTCTTCTTATATGCTGTATGCCAAGGACGTCCGTGCTGAGGTGGTAGC
AGAGTTCCCCGCTCTCAAAGTCACAGAAATTGGGAGTAAGATCGGCGAGA
AATGGAGAGGGTTAAGCGAGGAGGAAAAGGCCAAGTACACGGCCAAGGCC
GCAAAGCTAAAGGCGGATGCCAACAAGTAAATGTCTGAGACACAAGGTGG
CGGCGGCTCGGGATCAGCCCTTGGGCACATCGCCTATGTCCAATCCATGC
TAACCAAGCTGCCGAACGACCATGACTTGCTCAAGTCGTTGCATATGCTG
ATGTACAAAACTCCGGGCACTAAACTTAATCGCAAGAAGACCATCAGGGC
CTTCAACGGCTTCCCTGCCGGGACGGATCTCAATGGTGTTACGGACCGAA
TTTCAGGAAATAGAAAGTGGACTGTGACTGTCTTGAAGGATGCCGCCACT
TTGTTTGGGTTGGAGAAGGGGGGGGATCGCGAGACCTTGATAGGACGTCT
GGTGAAGTACCTGAATAAGCCAGTGACGTTGAAGGAGGTCGGGTCGACCG
CTGGAGCGAGCAGCAAGAAGAAGAGCAGGGAGAACCCTGCGGCCATGGCC
AAGAAGGGGAGTGATGGCGTGAAGCGCACTTTGTCTTCTTATATGCTGTA
TGCCAAGGACGTCCGTGCTGAGGTGGTAGCAGAGTTCCCCGCTCTCAAAG
TCACAGAAATTGGGAGTAAGATCGGCGAGAAATGGAGAGGGTTAAGCGAG
GAGGAAAAGGCCAAGTACACGGCCAAGGCCGCAAAGCTAAAGGCGGATGC
CAACAAGTAA

Synonyms

Publications