jgi.p|Nanoce1779_2|580598, mRNA_2506 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580598
Unique Name	mRNA_2506
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1536
Alignment location	scaffold_5:517471..519279 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580684
Track	FilteredModels2
ProteinId	580598

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:517471..519279 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580598	gene_2506	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580598	mRNA_2506-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2506	CDS_2506	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:517471..519279+
coding sequence from alignment at scaffold_5:517471..519279+

mRNA sequence

>mRNA_2506 ID=mRNA_2506|Name=jgi.p|Nanoce1779_2|580598|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
AGACCACATACACAAGATACGTAGGACTCGCTCGCTGTCGTGAGACAACC
GCAGAAGACGCAGGGTTGCTTGGCAGCGTTCCATTTGGACTCTGCAAGGG
GCCTCGGTACACACTCGGTAGGTAATATGGCCATCACGTCGATATGCCGT
CTGGTCCTGATCTCCAGTTCAATGGTAGTCGCGCTGGCAGCCGACCGGTC
TTCAACCTCCATGGACTACTTCCCTGCGGACAGCCCCGTGGTACCCATCC
ACATTCCCGAGCAAAAAATCTTTGATGGCATTGAGTTCCCGCTCGTGCTG
GGGCCTAACCCTAAGACCAAAAATACCGGCGCAAGGACTAAACAAGAGAC
GCTGAAAGAGTGGGTACAAGCAGCCACACCCGAAGTGGTGGATGCGCTTC
TGCTCAAGCATGGCGCCATCCTCTTCAAGGACTTTCAAGTCGACACCCCC
GAGCGCTTCAACAACATGGTAGAAGAATTCGGCTTCGACAATTTTCCCTA
CGTCGGTGGAGCTGCCGTCCGCCGCCAGCTTGCCCCTCGTGTCTTCACAA
CAAACGAGTCCCCGCCCTCGGAAAAAATCCCCTTCCACCACGAAATGGCC
CAGGTGCCCTCGTTTCCCGCCAAGGTCTTCTTTCAATGCGACACCCCTCC
GGAAACAGGGGGCGAGACCCCCATTCTGCCTTCATGGGAGGTCTGCGCAA
GACTCGAAGCGAAGCACCCGGCATTCATCCGGAAGTTAGCAGACGGGGTG
AGGTACGTCCGTGTTATGCCCGAGGAAGACGATCCTTCGTCCGCGATTGG
CCGAGGGTGGAAATCAACGTATGCCACGCAGGATCGAGCGGAGGTAGAAG
TCCGATTGCGCAGTTTAAACTACACCGGGGAGTGGTTGGGGGATGGGAGC
CTGAGGACGATCTCGCCTGTCTTGTCAGCAGTGAGGCAAGACGTGGGAGA
GGGGAGGTCGGGGAGGAAAACGTTCTTTAACTCGGTAGTTGCGGTGTTTA
CAGGGTGGAATGACTCGAGAAATAAAGGGGAGAGGGCCATTCAGTTCGCG
GACGGGAGTTACTTGGACCCGACTTTGATCGCAGAGGCTGGTTCAATAAT
GGAGGAGCTGGCGGTGGCATTCCCGTGGAAGAGGGGGGATTTCGTCTTGA
TTGATAACCACACGGTCATGCATTCAAGGAGGCCCTTCACGGGGAAGAGA
CTGGTGACGGCAAGTCTGGCCAAGGCAGCGCGTGTGATAAGGTCTGCTGT
ATCGGTAGAAGGGGGTGGGGAGCTGTGAGGTGTATATGGTTGACGGACAA
GGACATGTTTGGTAGGACTGCAACATGAATCGGAGGGAAACGAAAACGAA
TCCAAGAGAGAGCTTGATCGCCAGGCATCCATTAAGGAGAAATTGAACCA
TACCTAAGGAAAGAAAACAAAAAATCCATGAAGAAGAAACACAACAAAGG
CAGAAGAGAAAAGGAAGAGCACATTCAGATCAAGACGAGATTCGAGACTT
TAAATTTTCCTTCTTCTTGTGTTCGTGTTCGCGGAA

protein sequence of jgi.p|Nanoce1779_2|580598

>mRNA_2506-protein ID=mRNA_2506-protein|Name=jgi.p|Nanoce1779_2|580598|organism=Nannochloropsis oceanica|type=polypeptide|length=384bp
MAITSICRLVLISSSMVVALAADRSSTSMDYFPADSPVVPIHIPEQKIFD
GIEFPLVLGPNPKTKNTGARTKQETLKEWVQAATPEVVDALLLKHGAILF
KDFQVDTPERFNNMVEEFGFDNFPYVGGAAVRRQLAPRVFTTNESPPSEK
IPFHHEMAQVPSFPAKVFFQCDTPPETGGETPILPSWEVCARLEAKHPAF
IRKLADGVRYVRVMPEEDDPSSAIGRGWKSTYATQDRAEVEVRLRSLNYT
GEWLGDGSLRTISPVLSAVRQDVGEGRSGRKTFFNSVVAVFTGWNDSRNK
GERAIQFADGSYLDPTLIAEAGSIMEELAVAFPWKRGDFVLIDNHTVMHS
RRPFTGKRLVTASLAKAARVIRSAVSVEGGGEL*

mRNA from alignment at scaffold_5:517471..519279+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2506 ID=mRNA_2506|Name=jgi.p|Nanoce1779_2|580598|organism=Nannochloropsis oceanica|type=mRNA|length=1809bp|location=Sequence derived from alignment at scaffold_5:517471..519279+ (Nannochloropsis oceanica)
AGACCACATACACAAGATACGTAGGACTCGCTCGCTGTCGTGAGACAACC
GCAGAAGACGCAGGGTTGCTTGGCAGCGTTCCATTTGGACTCTGCAAGGG
GCCTCGGTACACACTCGGTAGGTAATATGGCCATCACGTCGATATGCCGT
CTGGTCCTGATCTCCAGTTCAATGGTAGTCGCGCTGGCAGCCGACCGGTC
TTCAACCTCCATGGTAAGTGCGAATGCACATTTGTCGATGCTCTCAGGTT
CTGGTGTAGAGGCTCCGTAATCACGAGATATTTAGCTCGTTCGTCCCATC
TCGATTGAGCCTTCGACCCGATTCCGGTTGGTTTAGGACACACATGCACA
CACATGCACGCATACGCTCGCATGCTTTTGCTTCGTTATTTATGGTGCCA
GTATTTTCCAGAATTTTCTCATCGTCCCTATCCCAAGCACCCAGTCACAC
CCCTCTCCCCAAACCCTTTTCCCCAACATCAACCAGGACTACTTCCCTGC
GGACAGCCCCGTGGTACCCATCCACATTCCCGAGCAAAAAATCTTTGATG
GCATTGAGTTCCCGCTCGTGCTGGGGCCTAACCCTAAGACCAAAAATACC
GGCGCAAGGACTAAACAAGAGACGCTGAAAGAGTGGGTACAAGCAGCCAC
ACCCGAAGTGGTGGATGCGCTTCTGCTCAAGCATGGCGCCATCCTCTTCA
AGGACTTTCAAGTCGACACCCCCGAGCGCTTCAACAACATGGTAGAAGAA
TTCGGCTTCGACAATTTTCCCTACGTCGGTGGAGCTGCCGTCCGCCGCCA
GCTTGCCCCTCGTGTCTTCACAACAAACGAGTCCCCGCCCTCGGAAAAAA
TCCCCTTCCACCACGAAATGGCCCAGGTGCCCTCGTTTCCCGCCAAGGTC
TTCTTTCAATGCGACACCCCTCCGGAAACAGGGGGCGAGACCCCCATTCT
GCCTTCATGGGAGGTCTGCGCAAGACTCGAAGCGAAGCACCCGGCATTCA
TCCGGAAGTTAGCAGACGGGGTGAGGTACGTCCGTGTTATGCCCGAGGAA
GACGATCCTTCGTCCGCGATTGGCCGAGGGTGGAAATCAACGTATGCCAC
GCAGGATCGAGCGGAGGTAGAAGTCCGATTGCGCAGTTTAAACTACACCG
GGGAGTGGTTGGGGGATGGGAGCCTGAGGACGATCTCGCCTGTCTTGTCA
GCAGTGAGGCAAGACGTGGGAGAGGGGAGGTCGGGGAGGAAAACGTTCTT
TAACTCGGTAGTTGCGGTGTTTACAGGGTGGAATGACTCGAGAAATAAAG
GGGAGAGGGCCATTCAGTTCGCGGACGGGAGTTACTTGGACCCGACTTTG
ATCGCAGAGGCTGGTTCAATAATGGAGGAGCTGGCGGTGGCATTCCCGTG
GAAGAGGGGGGATTTCGTCTTGATTGATAACCACACGGTCATGCATTCAA
GGAGGCCCTTCACGGGGAAGAGACTGGTGACGGCAAGTCTGGCCAAGGCA
GCGCGTGTGATAAGGTCTGCTGTATCGGTAGAAGGGGGTGGGGAGCTGTG
AGGTGTATATGGTTGACGGACAAGGACATGTTTGGTAGGACTGCAACATG
AATCGGAGGGAAACGAAAACGAATCCAAGAGAGAGCTTGATCGCCAGGCA
TCCATTAAGGAGAAATTGAACCATACCTAAGGAAAGAAAACAAAAAATCC
ATGAAGAAGAAACACAACAAAGGCAGAAGAGAAAAGGAAGAGCACATTCA
GATCAAGACGAGATTCGAGACTTTAAATTTTCCTTCTTCTTGTGTTCGTG
TTCGCGGAA

Coding sequence (CDS) from alignment at scaffold_5:517471..519279+

>mRNA_2506 ID=mRNA_2506|Name=jgi.p|Nanoce1779_2|580598|organism=Nannochloropsis oceanica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_5:517471..519279+ (Nannochloropsis oceanica)
ATGGCCATCACGTCGATATGCCGTCTGGTCCTGATCTCCAGTTCAATGGT
AGTCGCGCTGGCAGCCGACCGGTCTTCAACCTCCATGGACTACTTCCCTG
CGGACAGCCCCGTGGTACCCATCCACATTCCCGAGCAAAAAATCTTTGAT
GGCATTGAGTTCCCGCTCGTGCTGGGGCCTAACCCTAAGACCAAAAATAC
CGGCGCAAGGACTAAACAAGAGACGCTGAAAGAGTGGGTACAAGCAGCCA
CACCCGAAGTGGTGGATGCGCTTCTGCTCAAGCATGGCGCCATCCTCTTC
AAGGACTTTCAAGTCGACACCCCCGAGCGCTTCAACAACATGGTAGAAGA
ATTCGGCTTCGACAATTTTCCCTACGTCGGTGGAGCTGCCGTCCGCCGCC
AGCTTGCCCCTCGTGTCTTCACAACAAACGAGTCCCCGCCCTCGGAAAAA
ATCCCCTTCCACCACGAAATGGCCCAGGTGCCCTCGTTTCCCGCCAAGGT
CTTCTTTCAATGCGACACCCCTCCGGAAACAGGGGGCGAGACCCCCATTC
TGCCTTCATGGGAGGTCTGCGCAAGACTCGAAGCGAAGCACCCGGCATTC
ATCCGGAAGTTAGCAGACGGGGTGAGGTACGTCCGTGTTATGCCCGAGGA
AGACGATCCTTCGTCCGCGATTGGCCGAGGGTGGAAATCAACGTATGCCA
CGCAGGATCGAGCGGAGGTAGAAGTCCGATTGCGCAGTTTAAACTACACC
GGGGAGTGGTTGGGGGATGGGAGCCTGAGGACGATCTCGCCTGTCTTGTC
AGCAGTGAGGCAAGACGTGGGAGAGGGGAGGTCGGGGAGGAAAACGTTCT
TTAACTCGGTAGTTGCGGTGTTTACAGGGTGGAATGACTCGAGAAATAAA
GGGGAGAGGGCCATTCAGTTCGCGGACGGGAGTTACTTGGACCCGACTTT
GATCGCAGAGGCTGGTTCAATAATGGAGGAGCTGGCGGTGGCATTCCCGT
GGAAGAGGGGGGATTTCGTCTTGATTGATAACCACACGGTCATGCATTCA
AGGAGGCCCTTCACGGGGAAGAGACTGGTGACGGCAAGTCTGGCCAAGGC
AGCGCGTGTGATAAGGTCTGCTGTATCGGTAGAAGGGGGTGGGGAGCTGT
GAATGGCCATCACGTCGATATGCCGTCTGGTCCTGATCTCCAGTTCAATG
GTAGTCGCGCTGGCAGCCGACCGGTCTTCAACCTCCATGGACTACTTCCC
TGCGGACAGCCCCGTGGTACCCATCCACATTCCCGAGCAAAAAATCTTTG
ATGGCATTGAGTTCCCGCTCGTGCTGGGGCCTAACCCTAAGACCAAAAAT
ACCGGCGCAAGGACTAAACAAGAGACGCTGAAAGAGTGGGTACAAGCAGC
CACACCCGAAGTGGTGGATGCGCTTCTGCTCAAGCATGGCGCCATCCTCT
TCAAGGACTTTCAAGTCGACACCCCCGAGCGCTTCAACAACATGGTAGAA
GAATTCGGCTTCGACAATTTTCCCTACGTCGGTGGAGCTGCCGTCCGCCG
CCAGCTTGCCCCTCGTGTCTTCACAACAAACGAGTCCCCGCCCTCGGAAA
AAATCCCCTTCCACCACGAAATGGCCCAGGTGCCCTCGTTTCCCGCCAAG
GTCTTCTTTCAATGCGACACCCCTCCGGAAACAGGGGGCGAGACCCCCAT
TCTGCCTTCATGGGAGGTCTGCGCAAGACTCGAAGCGAAGCACCCGGCAT
TCATCCGGAAGTTAGCAGACGGGGTGAGGTACGTCCGTGTTATGCCCGAG
GAAGACGATCCTTCGTCCGCGATTGGCCGAGGGTGGAAATCAACGTATGC
CACGCAGGATCGAGCGGAGGTAGAAGTCCGATTGCGCAGTTTAAACTACA
CCGGGGAGTGGTTGGGGGATGGGAGCCTGAGGACGATCTCGCCTGTCTTG
TCAGCAGTGAGGCAAGACGTGGGAGAGGGGAGGTCGGGGAGGAAAACGTT
CTTTAACTCGGTAGTTGCGGTGTTTACAGGGTGGAATGACTCGAGAAATA
AAGGGGAGAGGGCCATTCAGTTCGCGGACGGGAGTTACTTGGACCCGACT
TTGATCGCAGAGGCTGGTTCAATAATGGAGGAGCTGGCGGTGGCATTCCC
GTGGAAGAGGGGGGATTTCGTCTTGATTGATAACCACACGGTCATGCATT
CAAGGAGGCCCTTCACGGGGAAGAGACTGGTGACGGCAAGTCTGGCCAAG
GCAGCGCGTGTGATAAGGTCTGCTGTATCGGTAGAAGGGGGTGGGGAGCT
GTGA

Synonyms

Publications