jgi.p|Nanoce1779_2|580593, mRNA_2504 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580593
Unique Name	mRNA_2504
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1884
Alignment location	scaffold_5:512226..514109 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580679
Track	FilteredModels2
ProteinId	580593

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:512226..514109 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580593	gene_2504	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580593	mRNA_2504-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2504	CDS_2504	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:512226..514109+
coding sequence from alignment at scaffold_5:512226..514109+

mRNA sequence

>mRNA_2504 ID=mRNA_2504|Name=jgi.p|Nanoce1779_2|580593|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp
AACAGAAAAATATGAACAATAAGAAAGGCGACGTTAACAGCAGCATCGGA
CGCGGAAATGACGACAGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAA
CGATCGCATGGACGCCGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGC
CTCAGGAGATGCCGACCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCA
CCGGAGGATGCTTTGGCCGCGGACCATCAGCAGGGGCTAGATTTACTTGG
ATTGCTTGGTACCCACGGGCTGGGCTTGTACGGAGCGATGAAACTTATCA
ATTTTATCCGCACCCTTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTT
GTTGCGCAGGTGCAGGATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGA
CGAGATGCTACAGCCCGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAG
GGGAACTGTTGGAGGCACACGGGCTCGACTTGCTGCTGCAGAATGAGGAG
GAAGGAGAGAGCACAGGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGG
GACACAGGCGATGGCAGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGT
CTTCGCAGGGGCAACGTGGACTTGTCCAGGAGAACCACGAACTACGCGAA
GAATTGGGAGAAGTACGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGC
GGCAGTGGACGAGGACGTCAAGATCCGCACCAAACCGGAGCGCCAAGACA
ATGACACATACTATTTTAAGTCTTACAGCCACTATTGCATTCACGAGACC
ATGCTAAAGGACACCGTGCGGACGCAGTCGTATCGGGAAGCGATTCACAA
AGCGGGGTTGGAGGGGAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTG
TGTTGTCCATGTTTGCGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTG
GACTGTAGTAGAATTATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGG
GTTGGAGGAGAAGGTAGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACT
TGCCTGTTGATAAGGTCGATGTGATTGTGTCTGAGTGGATGGGGTATTGT
TTGCTTTATGAATCGATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTA
CCTACGTCCCGGCGGACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCC
AAGGAGTAGGGGACTTTGAAGGTAAATTAGGGTGGTGGGACAATGTGTAT
GGATTAGACATGAGTCCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGT
AGAAGTGGCAGATCCTCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGG
ACTTTGATCTTTACAACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGAC
TTTTCGTTGATTGTCGGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAG
GCGTTTAAGAGGTCTAGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGT
CAGGGGGGCAGAGTGTTGTTTTTTCGACGAGGCCAAACGAGAAAGATACG
CATTGGCACCAGACTCTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCT
TGGGGGGGGAGATATGGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGA
TAAATCCGCGCGATTATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAA
GAGGGGGAAGTTGTGGTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAG
CTGAAATATGAGAGGAAGAGCGAAAAGTCAATACTCGTTGGAAACGACAA
AACGGAAACAAAGCACCAAGAGTGTTATTACCAGCACAAAGCAAAAATAA
AGGTCAGGAAAGGAAATAATTGACAAACAGCGAC

protein sequence of jgi.p|Nanoce1779_2|580593

>mRNA_2504-protein ID=mRNA_2504-protein|Name=jgi.p|Nanoce1779_2|580593|organism=Nannochloropsis oceanica|type=polypeptide|length=581bp
MNNKKGDVNSSIGRGNDDSSCSSDSSGSCNDRMDAEEEWGDWEDEGPQEM
PTQCLLSDAIKSSPEDALAADHQQGLDLLGLLGTHGLGLYGAMKLINFIR
TLVLKHGVSAEQVVAQVQDVDSLRAALQGDEMLQPVLEDDPLLFALGELL
EAHGLDLLLQNEEEGESTGEEERDAENGAGTQAMAAGDQKVSDRHLSSQG
QRGLVQENHELREELGEVRARLKRLSELMAAVDEDVKIRTKPERQDNDTY
YFKSYSHYCIHETMLKDTVRTQSYREAIHKAGLEGKVVLDVGSGSGVLSM
FAAKAGAAQVVGVDCSRIMEQARAIVKLNGLEEKVVLVQGKMEEVNLPVD
KVDVIVSEWMGYCLLYESMLPSVLAARDKYLRPGGLLLPSRCTMLVQGVG
DFEGKLGWWDNVYGLDMSPLRESVLAEPGVEVADPQAILTDAFVFKDFDL
YNVQVKDLDFEADFSLIVGAASGATVVGSRRLRGLVVSFDTYFLGLSGGQ
SVVFSTRPNEKDTHWHQTLFWLTGAPEEELGGGDMVKGKLCFSRNAINPR
DYDVAISWEVLRKEGEVVVGQGRQSYTLGS*

mRNA from alignment at scaffold_5:512226..514109+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2504 ID=mRNA_2504|Name=jgi.p|Nanoce1779_2|580593|organism=Nannochloropsis oceanica|type=mRNA|length=1884bp|location=Sequence derived from alignment at scaffold_5:512226..514109+ (Nannochloropsis oceanica)
AACAGAAAAATATGAACAATAAGAAAGGCGACGTTAACAGCAGCATCGGA
CGCGGAAATGACGACAGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAA
CGATCGCATGGACGCCGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGC
CTCAGGAGATGCCGACCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCA
CCGGAGGATGCTTTGGCCGCGGACCATCAGCAGGGGCTAGATTTACTTGG
ATTGCTTGGTACCCACGGGCTGGGCTTGTACGGAGCGATGAAACTTATCA
ATTTTATCCGCACCCTTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTT
GTTGCGCAGGTGCAGGATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGA
CGAGATGCTACAGCCCGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAG
GGGAACTGTTGGAGGCACACGGGCTCGACTTGCTGCTGCAGAATGAGGAG
GAAGGAGAGAGCACAGGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGG
GACACAGGCGATGGCAGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGT
CTTCGCAGGGGCAACGTGGACTTGTCCAGGAGAACCACGAACTACGCGAA
GAATTGGGAGAAGTACGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGC
GGCAGTGGACGAGGACGTCAAGATCCGCACCAAACCGGAGCGCCAAGACA
ATGACACATACTATTTTAAGTCTTACAGCCACTATTGCATTCACGAGACC
ATGCTAAAGGACACCGTGCGGACGCAGTCGTATCGGGAAGCGATTCACAA
AGCGGGGTTGGAGGGGAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTG
TGTTGTCCATGTTTGCGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTG
GACTGTAGTAGAATTATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGG
GTTGGAGGAGAAGGTAGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACT
TGCCTGTTGATAAGGTCGATGTGATTGTGTCTGAGTGGATGGGGTATTGT
TTGCTTTATGAATCGATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTA
CCTACGTCCCGGCGGACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCC
AAGGAGTAGGGGACTTTGAAGGTAAATTAGGGTGGTGGGACAATGTGTAT
GGATTAGACATGAGTCCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGT
AGAAGTGGCAGATCCTCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGG
ACTTTGATCTTTACAACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGAC
TTTTCGTTGATTGTCGGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAG
GCGTTTAAGAGGTCTAGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGT
CAGGGGGGCAGAGTGTTGTTTTTTCGACGAGGCCAAACGAGAAAGATACG
CATTGGCACCAGACTCTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCT
TGGGGGGGGAGATATGGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGA
TAAATCCGCGCGATTATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAA
GAGGGGGAAGTTGTGGTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAG
CTGAAATATGAGAGGAAGAGCGAAAAGTCAATACTCGTTGGAAACGACAA
AACGGAAACAAAGCACCAAGAGTGTTATTACCAGCACAAAGCAAAAATAA
AGGTCAGGAAAGGAAATAATTGACAAACAGCGAC

Coding sequence (CDS) from alignment at scaffold_5:512226..514109+

>mRNA_2504 ID=mRNA_2504|Name=jgi.p|Nanoce1779_2|580593|organism=Nannochloropsis oceanica|type=CDS|length=1743bp|location=Sequence derived from alignment at scaffold_5:512226..514109+ (Nannochloropsis oceanica)
ATGAACAATAAGAAAGGCGACGTTAACAGCAGCATCGGACGCGGAAATGA
CGACAGCTCATGTAGTAGCGACAGCAGTGGCAGCTGCAACGATCGCATGG
ACGCCGAGGAAGAATGGGGCGACTGGGAGGACGAAGGGCCTCAGGAGATG
CCGACCCAATGCCTCCTTTCGGACGCCATTAAGTCCTCACCGGAGGATGC
TTTGGCCGCGGACCATCAGCAGGGGCTAGATTTACTTGGATTGCTTGGTA
CCCACGGGCTGGGCTTGTACGGAGCGATGAAACTTATCAATTTTATCCGC
ACCCTTGTGCTAAAGCATGGCGTGTCGGCTGAGCAAGTTGTTGCGCAGGT
GCAGGATGTCGATAGCTTACGGGCCGCGTTGCAAGGAGACGAGATGCTAC
AGCCCGTTTTGGAGGACGATCCACTCCTTTTTGCGCTAGGGGAACTGTTG
GAGGCACACGGGCTCGACTTGCTGCTGCAGAATGAGGAGGAAGGAGAGAG
CACAGGAGAAGAGGAGAGGGATGCGGAGAACGGGGCAGGGACACAGGCGA
TGGCAGCAGGTGATCAGAAGGTGTCTGACCGGCATTTGTCTTCGCAGGGG
CAACGTGGACTTGTCCAGGAGAACCACGAACTACGCGAAGAATTGGGAGA
AGTACGAGCGCGGTTGAAGCGCTTGAGTGAGCTGATGGCGGCAGTGGACG
AGGACGTCAAGATCCGCACCAAACCGGAGCGCCAAGACAATGACACATAC
TATTTTAAGTCTTACAGCCACTATTGCATTCACGAGACCATGCTAAAGGA
CACCGTGCGGACGCAGTCGTATCGGGAAGCGATTCACAAAGCGGGGTTGG
AGGGGAAGGTGGTTTTAGATGTTGGGTCAGGAAGTGGTGTGTTGTCCATG
TTTGCGGCCAAAGCTGGCGCGGCTCAGGTAGTGGGTGTGGACTGTAGTAG
AATTATGGAGCAGGCAAGAGCTATTGTGAAATTAAATGGGTTGGAGGAGA
AGGTAGTGTTGGTGCAGGGGAAGATGGAGGAGGTAAACTTGCCTGTTGAT
AAGGTCGATGTGATTGTGTCTGAGTGGATGGGGTATTGTTTGCTTTATGA
ATCGATGCTCCCTTCTGTATTAGCAGCAAGGGATAAGTACCTACGTCCCG
GCGGACTGTTGTTGCCCAGTCGGTGCACAATGCTCGTCCAAGGAGTAGGG
GACTTTGAAGGTAAATTAGGGTGGTGGGACAATGTGTATGGATTAGACAT
GAGTCCTCTCAGGGAGTCAGTGCTAGCAGAACCGGGGGTAGAAGTGGCAG
ATCCTCAAGCGATTTTGACGGATGCTTTTGTTTTTAAGGACTTTGATCTT
TACAACGTGCAAGTGAAAGATTTGGATTTCGAGGCTGACTTTTCGTTGAT
TGTCGGGGCAGCATCAGGTGCAACAGTTGTAGGATCGAGGCGTTTAAGAG
GTCTAGTGGTCTCTTTCGATACGTATTTTTTGGGCCTGTCAGGGGGGCAG
AGTGTTGTTTTTTCGACGAGGCCAAACGAGAAAGATACGCATTGGCACCA
GACTCTTTTTTGGCTGACAGGGGCGCCGGAGGAGGAGCTTGGGGGGGGAG
ATATGGTGAAGGGGAAACTTTGCTTTTCTCGGAATGCGATAAATCCGCGC
GATTATGACGTGGCTATTTCGTGGGAGGTCTTGAGGAAAGAGGGGGAAGT
TGTGGTGGGGCAGGGAAGGCAGAGCTATACTTTGGGGAGCTGA

Synonyms

Publications