jgi.p|Nanoce1779_2|580587, mRNA_2503 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580587
Unique NamemRNA_2503
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1666
Alignment locationscaffold_5:508594..510259 -

Link to JBrowse

Properties
Property NameValue
TranscriptId580673
TrackFilteredModels2
ProteinId580587
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:508594..510259 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580587gene_2503Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580587mRNA_2503-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2503CDS_2503Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2503 ID=mRNA_2503|Name=jgi.p|Nanoce1779_2|580587|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp
ACAGGCCTTGCGGATTAAAGCTCTACATACCATTCCGTTTTCCCCCAACC
CGAGTCCTACCCTTTCCTACGATTCGTCGGCAGCATGGCGGGCGGGCACT
TTCGCAGGCTGCTGCTCGTGGTCAAGCACACGCCGTATGAGATGTACTTG
CAGATGAAGTCGCAAGGCAAGGCGCCTTTGGCATTGCGGTGGGAGCGGCT
CAAGCATCGGCACCAGGTACACAAGGAATGCGTACAAGACCTGAGCGATT
TACTGCGACGCATGGACGTGGACTTCTCCATGGTGGGCCGGGAAGAATTG
GACCGACAGCACCTCAAGAACGTGGATTTGGTAGTTGCTGTGGGTGGGGA
TGGCACGGCCCTTTCGTGCTCCCACTTTTTAGACGATACCATTCCGTTGC
TGGGTGTGAACAGCGACCCCTCCCGGGATGACGAGAAGGCTACTACCAAG
CGACTGGATGAACGCCGGAGTTTTGGAGCTTTATGTGCATGCACTGCCTC
CAACATGTTTGAGGTGATACCGGATATCTTGCAAGGCCAGAACCAGGCCG
TGCGGCGGACGCGCATCCAAACCGTCGTGCGTGATGCCCTGAAAGAAACC
AAACTCCCTCCCGCCTTAAACGACATCCTAGTCGCACACCCCAGCCCCGC
GGCCGTGTCCCGTTTCCGACTTGGATTCCTCAATGATGTCGGGGATGAGA
CCTCGCATTTTAATGTCTGGTCGAGCGGGCTGTGGATTTCGACGGCCACA
GGCTCGTCTGCAGCAATGACGGCTGCGGGAGGGAATTTGATGGATCTGAA
TTCAAGTGAACTCCAGTATATGGTCCGAGAGCATCTACTCGAGGCTGGCG
GGGAGCACTTGAAGAAGGAGGGGCATGGCATGCTTAAGCCGGGTAAGACC
TTGCAGATGCGTTGGAATTCTCAGCATGGGTGCGTGTATGTGGATGGGGA
ACACGTCAGGCACAACTTACAGTTGGGCGATACTGTTAGTTTATCGGCGG
ATGCACCTCCAGTGTGGGTCTTTGAAAAGCCAGGGGGACAGTCGTCTGTG
GCATCCACTTTATCGTCTCCGTGAAGCACGGAAACAAGAGGGGCGACGGT
CAGATGGAAAAGTGATTTTGATCGATAGAGGCGCAGATTTAGGAAAGGTG
ATGCTTTTTGGTGTGTAGAGGAAGCGGATGTATTTGCGTTAGAGAGTGTG
CGGGTATGCATGTATTTGTGTCGTTTGGTTGTCAAGGTGAGGTTTGTAAG
TGCGTGTCAGACTGGAACAATTTGTGACTGTAGCGTCGAAAGAGCAGAAG
AAAAAGAAGAAGAGGAAGGAGTTTGATGAAGAATTTTTTCTCTGGGAAGG
GAAAATGGGCGATTGGTAGTTTTCAGGGAGGAGAAAGGTTGCCAAAGGAG
AGAATCGAGAAAGGAGTGCCAGGACTTAGCTTGCTATTGTTCCGAACTTA
TTGGTCTGACTTTAATTGAGAGGATTATGCAAAGCACAGCAACAAGTGGG
CATGGCTAGAGGAGAGATAGAGATTGAGTGAGTGGGTGAACGAGCAATAG
AGAATGAACGCGTGTGTGAGAGTGTGTGTGTCAGAGAGAGATAGGAATGC
TCGCTGCTTAAAGAGAGGACAATCTACAAAAAAAATTCGCTGAAATAAAA
ATAACTCTAGAATAAA
back to top

protein sequence of jgi.p|Nanoce1779_2|580587

>mRNA_2503-protein ID=mRNA_2503-protein|Name=jgi.p|Nanoce1779_2|580587|organism=Nannochloropsis oceanica|type=polypeptide|length=330bp
MAGGHFRRLLLVVKHTPYEMYLQMKSQGKAPLALRWERLKHRHQVHKECV
QDLSDLLRRMDVDFSMVGREELDRQHLKNVDLVVAVGGDGTALSCSHFLD
DTIPLLGVNSDPSRDDEKATTKRLDERRSFGALCACTASNMFEVIPDILQ
GQNQAVRRTRIQTVVRDALKETKLPPALNDILVAHPSPAAVSRFRLGFLN
DVGDETSHFNVWSSGLWISTATGSSAAMTAAGGNLMDLNSSELQYMVREH
LLEAGGEHLKKEGHGMLKPGKTLQMRWNSQHGCVYVDGEHVRHNLQLGDT
VSLSADAPPVWVFEKPGGQSSVASTLSSP*
back to top

mRNA from alignment at scaffold_5:508594..510259-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2503 ID=mRNA_2503|Name=jgi.p|Nanoce1779_2|580587|organism=Nannochloropsis oceanica|type=mRNA|length=1666bp|location=Sequence derived from alignment at scaffold_5:508594..510259- (Nannochloropsis oceanica)
ACAGGCCTTGCGGATTAAAGCTCTACATACCATTCCGTTTTCCCCCAACC
CGAGTCCTACCCTTTCCTACGATTCGTCGGCAGCATGGCGGGCGGGCACT
TTCGCAGGCTGCTGCTCGTGGTCAAGCACACGCCGTATGAGATGTACTTG
CAGATGAAGTCGCAAGGCAAGGCGCCTTTGGCATTGCGGTGGGAGCGGCT
CAAGCATCGGCACCAGGTACACAAGGAATGCGTACAAGACCTGAGCGATT
TACTGCGACGCATGGACGTGGACTTCTCCATGGTGGGCCGGGAAGAATTG
GACCGACAGCACCTCAAGAACGTGGATTTGGTAGTTGCTGTGGGTGGGGA
TGGCACGGCCCTTTCGTGCTCCCACTTTTTAGACGATACCATTCCGTTGC
TGGGTGTGAACAGCGACCCCTCCCGGGATGACGAGAAGGCTACTACCAAG
CGACTGGATGAACGCCGGAGTTTTGGAGCTTTATGTGCATGCACTGCCTC
CAACATGTTTGAGGTGATACCGGATATCTTGCAAGGCCAGAACCAGGCCG
TGCGGCGGACGCGCATCCAAACCGTCGTGCGTGATGCCCTGAAAGAAACC
AAACTCCCTCCCGCCTTAAACGACATCCTAGTCGCACACCCCAGCCCCGC
GGCCGTGTCCCGTTTCCGACTTGGATTCCTCAATGATGTCGGGGATGAGA
CCTCGCATTTTAATGTCTGGTCGAGCGGGCTGTGGATTTCGACGGCCACA
GGCTCGTCTGCAGCAATGACGGCTGCGGGAGGGAATTTGATGGATCTGAA
TTCAAGTGAACTCCAGTATATGGTCCGAGAGCATCTACTCGAGGCTGGCG
GGGAGCACTTGAAGAAGGAGGGGCATGGCATGCTTAAGCCGGGTAAGACC
TTGCAGATGCGTTGGAATTCTCAGCATGGGTGCGTGTATGTGGATGGGGA
ACACGTCAGGCACAACTTACAGTTGGGCGATACTGTTAGTTTATCGGCGG
ATGCACCTCCAGTGTGGGTCTTTGAAAAGCCAGGGGGACAGTCGTCTGTG
GCATCCACTTTATCGTCTCCGTGAAGCACGGAAACAAGAGGGGCGACGGT
CAGATGGAAAAGTGATTTTGATCGATAGAGGCGCAGATTTAGGAAAGGTG
ATGCTTTTTGGTGTGTAGAGGAAGCGGATGTATTTGCGTTAGAGAGTGTG
CGGGTATGCATGTATTTGTGTCGTTTGGTTGTCAAGGTGAGGTTTGTAAG
TGCGTGTCAGACTGGAACAATTTGTGACTGTAGCGTCGAAAGAGCAGAAG
AAAAAGAAGAAGAGGAAGGAGTTTGATGAAGAATTTTTTCTCTGGGAAGG
GAAAATGGGCGATTGGTAGTTTTCAGGGAGGAGAAAGGTTGCCAAAGGAG
AGAATCGAGAAAGGAGTGCCAGGACTTAGCTTGCTATTGTTCCGAACTTA
TTGGTCTGACTTTAATTGAGAGGATTATGCAAAGCACAGCAACAAGTGGG
CATGGCTAGAGGAGAGATAGAGATTGAGTGAGTGGGTGAACGAGCAATAG
AGAATGAACGCGTGTGTGAGAGTGTGTGTGTCAGAGAGAGATAGGAATGC
TCGCTGCTTAAAGAGAGGACAATCTACAAAAAAAATTCGCTGAAATAAAA
ATAACTCTAGAATAAA
back to top

Coding sequence (CDS) from alignment at scaffold_5:508594..510259-

>mRNA_2503 ID=mRNA_2503|Name=jgi.p|Nanoce1779_2|580587|organism=Nannochloropsis oceanica|type=CDS|length=990bp|location=Sequence derived from alignment at scaffold_5:508594..510259- (Nannochloropsis oceanica)
ATGGCGGGCGGGCACTTTCGCAGGCTGCTGCTCGTGGTCAAGCACACGCC
GTATGAGATGTACTTGCAGATGAAGTCGCAAGGCAAGGCGCCTTTGGCAT
TGCGGTGGGAGCGGCTCAAGCATCGGCACCAGGTACACAAGGAATGCGTA
CAAGACCTGAGCGATTTACTGCGACGCATGGACGTGGACTTCTCCATGGT
GGGCCGGGAAGAATTGGACCGACAGCACCTCAAGAACGTGGATTTGGTAG
TTGCTGTGGGTGGGGATGGCACGGCCCTTTCGTGCTCCCACTTTTTAGAC
GATACCATTCCGTTGCTGGGTGTGAACAGCGACCCCTCCCGGGATGACGA
GAAGGCTACTACCAAGCGACTGGATGAACGCCGGAGTTTTGGAGCTTTAT
GTGCATGCACTGCCTCCAACATGTTTGAGGTGATACCGGATATCTTGCAA
GGCCAGAACCAGGCCGTGCGGCGGACGCGCATCCAAACCGTCGTGCGTGA
TGCCCTGAAAGAAACCAAACTCCCTCCCGCCTTAAACGACATCCTAGTCG
CACACCCCAGCCCCGCGGCCGTGTCCCGTTTCCGACTTGGATTCCTCAAT
GATGTCGGGGATGAGACCTCGCATTTTAATGTCTGGTCGAGCGGGCTGTG
GATTTCGACGGCCACAGGCTCGTCTGCAGCAATGACGGCTGCGGGAGGGA
ATTTGATGGATCTGAATTCAAGTGAACTCCAGTATATGGTCCGAGAGCAT
CTACTCGAGGCTGGCGGGGAGCACTTGAAGAAGGAGGGGCATGGCATGCT
TAAGCCGGGTAAGACCTTGCAGATGCGTTGGAATTCTCAGCATGGGTGCG
TGTATGTGGATGGGGAACACGTCAGGCACAACTTACAGTTGGGCGATACT
GTTAGTTTATCGGCGGATGCACCTCCAGTGTGGGTCTTTGAAAAGCCAGG
GGGACAGTCGTCTGTGGCATCCACTTTATCGTCTCCGTGA
back to top
Synonyms
Publications