jgi.p|Nanoce1779_2|580582, mRNA_2501 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580582
Unique Name	mRNA_2501
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1835
Alignment location	scaffold_5:503766..505600 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580668
Track	FilteredModels2
ProteinId	580582

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:503766..505600 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580582	gene_2501	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580582	mRNA_2501-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2501	CDS_2501	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:503766..505600-
coding sequence from alignment at scaffold_5:503766..505600-

mRNA sequence

>mRNA_2501 ID=mRNA_2501|Name=jgi.p|Nanoce1779_2|580582|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp
AGACAGCCGCAACCATGGCGGGGGAAGAGGAATTTGTGCGGGAGACGAGC
ATGTATGAGCATCCCTTGGTGAAGCGGTACGCTACCAAGGAAATGAGCTA
CATTTGGTCCCCAGAGAAGAAGTTTTCCACCTGGCGTCGGCTTTGGACTG
CGCTTGCCAAGGCCGAGAAGGAGTTGGGCATCGATATAACAGACGAGCAG
ATCGCGCAGATGGAGGCGCATATCACGGACATTGATTTTGACCGGGCCGA
AAAGAAGGAAAAGGAGACGCGGCACGACGTGATGGCGCACGTGTACACCT
ATGGAGAATCCGCCCCGGCAGCGCAGGGCATCATCCACATGGGTGCCACG
AGTTGCTTTGTCGGGGATAACACGGACATTATCCAGCTTAAGGAAGGTAT
GGAGCTGCTGAAGCGCAAGCTCGTAAAACTTTTGGCACAGATGAAGACGT
TCGCCGTTGAGCAACGTGCGCATGCCACCTTGGGGTTTACTCATTACCAG
GCTGCGCAGCTGACGACGGTGGGGAAGCGCATGACTCTGTACATGCAAGA
TTTCTTGATTGACCTAGAGCATTTGGAACGCGAGATCGCCACATTGCCAA
TGCGTGGGCTTAAGGGCACGACAGGCACACAGGCCACATTTTTGGAGCTT
TTTGAGGGGGACCACGAGAAGGTAAAGGAATGCAATCGCAAGGTGTGTGA
GTACCTGGGCTTCGATAAGTGGGTAGCTGTGTCCGGGCAGACCTACACGC
GAAAAATTGATTATCACATTATGTCCGTCTTGTCTGGGGTCGCGCAATCC
GCCTATAAGATGTGCGGAGATATTAGGTTGCTGGCTAACCTGAAGGAGAT
CGAGGAGCCTTTTGGGAAGGACCAGATCGGGTCAAGCGCCATGGCTTACA
AGCGTAACCCTATGCGATCCGAACGTGTCTGTTCTTTGGCTCGATATGTG
ATGGGGTTGCCGGCGGCAGCGGCGCAGACACATGCCACGCAATGGTTTGA
GCGGACATTGGATGACTCGTCTATTCGAAGGATTATCTTGCCGGAGGCCT
TTTTAGCCGTTGATGTGATTTTGAATATTGTCGCTAATGTCACTGATGGG
TTGCAGGTCTGGCCGCAAGTGATAAGGGCGCATGTTATGGCCGAATTACC
GTTCATGGCGACGGAGAAGATCTTGATGGCTTGTTGTAAGAAGGGAGGGG
ATCGACAGGCGCTTCATCATGCGATTAGGGAGCACAGTATGGACGCGGGG
AAGGTGGTCAAGGCGGAGGGGAAGCCGAATGATTTGTTGGAGCGTATTCG
GTTGGACCCGCTTTTTAAGAATATTCATGATGAATTAGATGAGCTGGTGG
ACCCCATGCTTTTCGTGGGGCGGGCGCCTGAGCAGGTCGATGAGTTTATG
AGTGAGGAGATTGACCCGGTGTTGGCCAAGCATAAAGATTTGCTGGCCGT
GGAGAATAAGGATGGGGTGAGTGTTTAAAAAAAAAGGTTTAAGTCTGTGT
GTAGTATGAGAAGACGTGGCACAGGATAGGACAAGGGAGAGAGGGGGGCG
AGTGGGGGACTGGGAAGGAGAGTAATACTGAGGTGTCGTTGTTTTGAAAA
GACCCAGGGCTAGGGAACGAGCACCATCAGGGGAACGCATCGGGGCATCT
CTATTTGGACCTGCATGGTTGCTCTTGAGGACGCCCCAAAGAGGAGAGAA
ACTGGTCGCGAAGCGAATCGAAGTACAACGAGGAAGATAAAAGTTAAATA
TAGGATTAACGGGAAGAAAAAGAAAAAGCAGCAGTCCTTATCGCGTTTTT
TGGTAAACAAGTGAAGTGTCGCACTCACTCATCTC

protein sequence of jgi.p|Nanoce1779_2|580582

>mRNA_2501-protein ID=mRNA_2501-protein|Name=jgi.p|Nanoce1779_2|580582|organism=Nannochloropsis oceanica|type=polypeptide|length=488bp
MAGEEEFVRETSMYEHPLVKRYATKEMSYIWSPEKKFSTWRRLWTALAKA
EKELGIDITDEQIAQMEAHITDIDFDRAEKKEKETRHDVMAHVYTYGESA
PAAQGIIHMGATSCFVGDNTDIIQLKEGMELLKRKLVKLLAQMKTFAVEQ
RAHATLGFTHYQAAQLTTVGKRMTLYMQDFLIDLEHLEREIATLPMRGLK
GTTGTQATFLELFEGDHEKVKECNRKVCEYLGFDKWVAVSGQTYTRKIDY
HIMSVLSGVAQSAYKMCGDIRLLANLKEIEEPFGKDQIGSSAMAYKRNPM
RSERVCSLARYVMGLPAAAAQTHATQWFERTLDDSSIRRIILPEAFLAVD
VILNIVANVTDGLQVWPQVIRAHVMAELPFMATEKILMACCKKGGDRQAL
HHAIREHSMDAGKVVKAEGKPNDLLERIRLDPLFKNIHDELDELVDPMLF
VGRAPEQVDEFMSEEIDPVLAKHKDLLAVENKDGVSV*

mRNA from alignment at scaffold_5:503766..505600-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2501 ID=mRNA_2501|Name=jgi.p|Nanoce1779_2|580582|organism=Nannochloropsis oceanica|type=mRNA|length=1835bp|location=Sequence derived from alignment at scaffold_5:503766..505600- (Nannochloropsis oceanica)
AGACAGCCGCAACCATGGCGGGGGAAGAGGAATTTGTGCGGGAGACGAGC
ATGTATGAGCATCCCTTGGTGAAGCGGTACGCTACCAAGGAAATGAGCTA
CATTTGGTCCCCAGAGAAGAAGTTTTCCACCTGGCGTCGGCTTTGGACTG
CGCTTGCCAAGGCCGAGAAGGAGTTGGGCATCGATATAACAGACGAGCAG
ATCGCGCAGATGGAGGCGCATATCACGGACATTGATTTTGACCGGGCCGA
AAAGAAGGAAAAGGAGACGCGGCACGACGTGATGGCGCACGTGTACACCT
ATGGAGAATCCGCCCCGGCAGCGCAGGGCATCATCCACATGGGTGCCACG
AGTTGCTTTGTCGGGGATAACACGGACATTATCCAGCTTAAGGAAGGTAT
GGAGCTGCTGAAGCGCAAGCTCGTAAAACTTTTGGCACAGATGAAGACGT
TCGCCGTTGAGCAACGTGCGCATGCCACCTTGGGGTTTACTCATTACCAG
GCTGCGCAGCTGACGACGGTGGGGAAGCGCATGACTCTGTACATGCAAGA
TTTCTTGATTGACCTAGAGCATTTGGAACGCGAGATCGCCACATTGCCAA
TGCGTGGGCTTAAGGGCACGACAGGCACACAGGCCACATTTTTGGAGCTT
TTTGAGGGGGACCACGAGAAGGTAAAGGAATGCAATCGCAAGGTGTGTGA
GTACCTGGGCTTCGATAAGTGGGTAGCTGTGTCCGGGCAGACCTACACGC
GAAAAATTGATTATCACATTATGTCCGTCTTGTCTGGGGTCGCGCAATCC
GCCTATAAGATGTGCGGAGATATTAGGTTGCTGGCTAACCTGAAGGAGAT
CGAGGAGCCTTTTGGGAAGGACCAGATCGGGTCAAGCGCCATGGCTTACA
AGCGTAACCCTATGCGATCCGAACGTGTCTGTTCTTTGGCTCGATATGTG
ATGGGGTTGCCGGCGGCAGCGGCGCAGACACATGCCACGCAATGGTTTGA
GCGGACATTGGATGACTCGTCTATTCGAAGGATTATCTTGCCGGAGGCCT
TTTTAGCCGTTGATGTGATTTTGAATATTGTCGCTAATGTCACTGATGGG
TTGCAGGTCTGGCCGCAAGTGATAAGGGCGCATGTTATGGCCGAATTACC
GTTCATGGCGACGGAGAAGATCTTGATGGCTTGTTGTAAGAAGGGAGGGG
ATCGACAGGCGCTTCATCATGCGATTAGGGAGCACAGTATGGACGCGGGG
AAGGTGGTCAAGGCGGAGGGGAAGCCGAATGATTTGTTGGAGCGTATTCG
GTTGGACCCGCTTTTTAAGAATATTCATGATGAATTAGATGAGCTGGTGG
ACCCCATGCTTTTCGTGGGGCGGGCGCCTGAGCAGGTCGATGAGTTTATG
AGTGAGGAGATTGACCCGGTGTTGGCCAAGCATAAAGATTTGCTGGCCGT
GGAGAATAAGGATGGGGTGAGTGTTTAAAAAAAAAGGTTTAAGTCTGTGT
GTAGTATGAGAAGACGTGGCACAGGATAGGACAAGGGAGAGAGGGGGGCG
AGTGGGGGACTGGGAAGGAGAGTAATACTGAGGTGTCGTTGTTTTGAAAA
GACCCAGGGCTAGGGAACGAGCACCATCAGGGGAACGCATCGGGGCATCT
CTATTTGGACCTGCATGGTTGCTCTTGAGGACGCCCCAAAGAGGAGAGAA
ACTGGTCGCGAAGCGAATCGAAGTACAACGAGGAAGATAAAAGTTAAATA
TAGGATTAACGGGAAGAAAAAGAAAAAGCAGCAGTCCTTATCGCGTTTTT
TGGTAAACAAGTGAAGTGTCGCACTCACTCATCTC

Coding sequence (CDS) from alignment at scaffold_5:503766..505600-

>mRNA_2501 ID=mRNA_2501|Name=jgi.p|Nanoce1779_2|580582|organism=Nannochloropsis oceanica|type=CDS|length=1464bp|location=Sequence derived from alignment at scaffold_5:503766..505600- (Nannochloropsis oceanica)
ATGGCGGGGGAAGAGGAATTTGTGCGGGAGACGAGCATGTATGAGCATCC
CTTGGTGAAGCGGTACGCTACCAAGGAAATGAGCTACATTTGGTCCCCAG
AGAAGAAGTTTTCCACCTGGCGTCGGCTTTGGACTGCGCTTGCCAAGGCC
GAGAAGGAGTTGGGCATCGATATAACAGACGAGCAGATCGCGCAGATGGA
GGCGCATATCACGGACATTGATTTTGACCGGGCCGAAAAGAAGGAAAAGG
AGACGCGGCACGACGTGATGGCGCACGTGTACACCTATGGAGAATCCGCC
CCGGCAGCGCAGGGCATCATCCACATGGGTGCCACGAGTTGCTTTGTCGG
GGATAACACGGACATTATCCAGCTTAAGGAAGGTATGGAGCTGCTGAAGC
GCAAGCTCGTAAAACTTTTGGCACAGATGAAGACGTTCGCCGTTGAGCAA
CGTGCGCATGCCACCTTGGGGTTTACTCATTACCAGGCTGCGCAGCTGAC
GACGGTGGGGAAGCGCATGACTCTGTACATGCAAGATTTCTTGATTGACC
TAGAGCATTTGGAACGCGAGATCGCCACATTGCCAATGCGTGGGCTTAAG
GGCACGACAGGCACACAGGCCACATTTTTGGAGCTTTTTGAGGGGGACCA
CGAGAAGGTAAAGGAATGCAATCGCAAGGTGTGTGAGTACCTGGGCTTCG
ATAAGTGGGTAGCTGTGTCCGGGCAGACCTACACGCGAAAAATTGATTAT
CACATTATGTCCGTCTTGTCTGGGGTCGCGCAATCCGCCTATAAGATGTG
CGGAGATATTAGGTTGCTGGCTAACCTGAAGGAGATCGAGGAGCCTTTTG
GGAAGGACCAGATCGGGTCAAGCGCCATGGCTTACAAGCGTAACCCTATG
CGATCCGAACGTGTCTGTTCTTTGGCTCGATATGTGATGGGGTTGCCGGC
GGCAGCGGCGCAGACACATGCCACGCAATGGTTTGAGCGGACATTGGATG
ACTCGTCTATTCGAAGGATTATCTTGCCGGAGGCCTTTTTAGCCGTTGAT
GTGATTTTGAATATTGTCGCTAATGTCACTGATGGGTTGCAGGTCTGGCC
GCAAGTGATAAGGGCGCATGTTATGGCCGAATTACCGTTCATGGCGACGG
AGAAGATCTTGATGGCTTGTTGTAAGAAGGGAGGGGATCGACAGGCGCTT
CATCATGCGATTAGGGAGCACAGTATGGACGCGGGGAAGGTGGTCAAGGC
GGAGGGGAAGCCGAATGATTTGTTGGAGCGTATTCGGTTGGACCCGCTTT
TTAAGAATATTCATGATGAATTAGATGAGCTGGTGGACCCCATGCTTTTC
GTGGGGCGGGCGCCTGAGCAGGTCGATGAGTTTATGAGTGAGGAGATTGA
CCCGGTGTTGGCCAAGCATAAAGATTTGCTGGCCGTGGAGAATAAGGATG
GGGTGAGTGTTTAA

Synonyms

Publications