jgi.p|Nanoce1779_2|576701, mRNA_250 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|576701
Unique NamemRNA_250
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length860
Alignment locationscaffold_3:625539..626398 -

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Properties
Property NameValue
TranscriptId576787
TrackFilteredModels2
ProteinId576701
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:625539..626398 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576701gene_250Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|576701mRNA_250-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_250CDS_250Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_250 ID=mRNA_250|Name=jgi.p|Nanoce1779_2|576701|organism=Nannochloropsis oceanica|type=mRNA|length=860bp
TTGGCAAATGCTTAGCACTCGAAGCAGCCAGGACCTGGGGGCCGGCACTC
GACATGCACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCA
GGCTATCGAGGGAATAATGAGAGTAAGTGATGGCCCGCGTATATGGACAT
GGCCAATAGACCTGGGAGACCTAGACTCATTGCCGCTCCAACTTGCGCAA
GTTTTTGCCGCCGTGCGGCAGCCGGAAGGGTCTCCTTTCTCGCTACCCTA
CACCAAGGCGTATCTGTTCAACAACGCAGGTTTGGTGGGGCCGATTGCAT
ATGCCAAGGATCTCCATAAAGATCTCGCGGCGTTGCGCCAGTCTATAGAC
TTGAACGTGACTTCCTTTGTCTACTTGACCTCGCTTTTCCTACACCACTT
TGGTGCACCACCGAGTCAAAAATTACCATTCGCCTCGTCTGCTGTCGTTG
TGAATATATCTTCACTCGCAGCCATCCAACCATTCCATACCTGGAGCATA
TATTGCGGAGGAAAGGCGGCGCGTGACATGTTCACTCAAGTCGTGGGGCA
GGAGCAACAACAGGAGGGGGAGGGGGGTGGCAAGCGAGTAACCACCACTT
TTAAAACCCTTAACTATGCGCCAGGCCCACTGAACACAGATATGCAGACA
GAGCTCCGAGAGAGTAAATCCATTCATCCACCGACGCGGATGTGGTCGAT
GGAGGCATTTAAAGAAGGCAAGCTGGTGCGGCCGGAAGACTCTGCGTCCA
AGTGCATACACTTTCTCACAGAGGACACCTGGGAAAGTGGGGCTCATGTT
GATTACTATGACGATGTATAGAAGAATATATGTGGAAAGGATGGATAACA
CGCCAGAGAA
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protein sequence of jgi.p|Nanoce1779_2|576701

>mRNA_250-protein ID=mRNA_250-protein|Name=jgi.p|Nanoce1779_2|576701|organism=Nannochloropsis oceanica|type=polypeptide|length=256bp
MHLIARNKEGLEATKQAIEGIMRVSDGPRIWTWPIDLGDLDSLPLQLAQV
FAAVRQPEGSPFSLPYTKAYLFNNAGLVGPIAYAKDLHKDLAALRQSIDL
NVTSFVYLTSLFLHHFGAPPSQKLPFASSAVVVNISSLAAIQPFHTWSIY
CGGKAARDMFTQVVGQEQQQEGEGGGKRVTTTFKTLNYAPGPLNTDMQTE
LRESKSIHPPTRMWSMEAFKEGKLVRPEDSASKCIHFLTEDTWESGAHVD
YYDDV*
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mRNA from alignment at scaffold_3:625539..626398-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_250 ID=mRNA_250|Name=jgi.p|Nanoce1779_2|576701|organism=Nannochloropsis oceanica|type=mRNA|length=860bp|location=Sequence derived from alignment at scaffold_3:625539..626398- (Nannochloropsis oceanica)
TTGGCAAATGCTTAGCACTCGAAGCAGCCAGGACCTGGGGGCCGGCACTC
GACATGCACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCA
GGCTATCGAGGGAATAATGAGAGTAAGTGATGGCCCGCGTATATGGACAT
GGCCAATAGACCTGGGAGACCTAGACTCATTGCCGCTCCAACTTGCGCAA
GTTTTTGCCGCCGTGCGGCAGCCGGAAGGGTCTCCTTTCTCGCTACCCTA
CACCAAGGCGTATCTGTTCAACAACGCAGGTTTGGTGGGGCCGATTGCAT
ATGCCAAGGATCTCCATAAAGATCTCGCGGCGTTGCGCCAGTCTATAGAC
TTGAACGTGACTTCCTTTGTCTACTTGACCTCGCTTTTCCTACACCACTT
TGGTGCACCACCGAGTCAAAAATTACCATTCGCCTCGTCTGCTGTCGTTG
TGAATATATCTTCACTCGCAGCCATCCAACCATTCCATACCTGGAGCATA
TATTGCGGAGGAAAGGCGGCGCGTGACATGTTCACTCAAGTCGTGGGGCA
GGAGCAACAACAGGAGGGGGAGGGGGGTGGCAAGCGAGTAACCACCACTT
TTAAAACCCTTAACTATGCGCCAGGCCCACTGAACACAGATATGCAGACA
GAGCTCCGAGAGAGTAAATCCATTCATCCACCGACGCGGATGTGGTCGAT
GGAGGCATTTAAAGAAGGCAAGCTGGTGCGGCCGGAAGACTCTGCGTCCA
AGTGCATACACTTTCTCACAGAGGACACCTGGGAAAGTGGGGCTCATGTT
GATTACTATGACGATGTATAGAAGAATATATGTGGAAAGGATGGATAACA
CGCCAGAGAA
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Coding sequence (CDS) from alignment at scaffold_3:625539..626398-

>mRNA_250 ID=mRNA_250|Name=jgi.p|Nanoce1779_2|576701|organism=Nannochloropsis oceanica|type=CDS|length=768bp|location=Sequence derived from alignment at scaffold_3:625539..626398- (Nannochloropsis oceanica)
ATGCACCTGATCGCACGCAACAAGGAAGGCCTAGAGGCCACCAAGCAGGC
TATCGAGGGAATAATGAGAGTAAGTGATGGCCCGCGTATATGGACATGGC
CAATAGACCTGGGAGACCTAGACTCATTGCCGCTCCAACTTGCGCAAGTT
TTTGCCGCCGTGCGGCAGCCGGAAGGGTCTCCTTTCTCGCTACCCTACAC
CAAGGCGTATCTGTTCAACAACGCAGGTTTGGTGGGGCCGATTGCATATG
CCAAGGATCTCCATAAAGATCTCGCGGCGTTGCGCCAGTCTATAGACTTG
AACGTGACTTCCTTTGTCTACTTGACCTCGCTTTTCCTACACCACTTTGG
TGCACCACCGAGTCAAAAATTACCATTCGCCTCGTCTGCTGTCGTTGTGA
ATATATCTTCACTCGCAGCCATCCAACCATTCCATACCTGGAGCATATAT
TGCGGAGGAAAGGCGGCGCGTGACATGTTCACTCAAGTCGTGGGGCAGGA
GCAACAACAGGAGGGGGAGGGGGGTGGCAAGCGAGTAACCACCACTTTTA
AAACCCTTAACTATGCGCCAGGCCCACTGAACACAGATATGCAGACAGAG
CTCCGAGAGAGTAAATCCATTCATCCACCGACGCGGATGTGGTCGATGGA
GGCATTTAAAGAAGGCAAGCTGGTGCGGCCGGAAGACTCTGCGTCCAAGT
GCATACACTTTCTCACAGAGGACACCTGGGAAAGTGGGGCTCATGTTGAT
TACTATGACGATGTATAG
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Synonyms
Publications