jgi.p|Nanoce1779_2|580570, mRNA_2497 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580570
Unique NamemRNA_2497
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1401
Alignment locationscaffold_5:490725..492367 -

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Properties
Property NameValue
TranscriptId580656
TrackFilteredModels2
ProteinId580570
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:490725..492367 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580570gene_2497Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580570mRNA_2497-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2497CDS_2497Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2497 ID=mRNA_2497|Name=jgi.p|Nanoce1779_2|580570|organism=Nannochloropsis oceanica|type=mRNA|length=1401bp
ACAGACAGCATTGGCGGCATCACCGGCCCCAGGATGGCCGCGCCCCGACG
CACAATACGAAGACCTGTCTTGAGCTCGTTTGCAAGCATGACTGTTCTCA
TGGCCGCTGCGGTCGCACTGGGCATGCAGGTAGCCCACGCCACCATCACC
ATGGCAAGAAAGAGTAGCAGCAGTATGGACAGGATAGGAGTTAGACAATG
CTCGTGTTGGCTGTCCGGCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGCC
ACACCCCACGTGTATTCCGCACCAACACTGTCCGCCTAAGACAAGTCATA
CAACAATGGTCCTCATCCGATGGAGCCACTCCCAGCTCCAGCACCACAAC
CGCTCCCTCCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCCCACCC
GCCCCCCCACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCCTCGGT
CAAAATTTTCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACTGCCTT
GGTAGATTCTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCCTGGTC
CTGGTGCCTTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGCTAGCC
GTGGAAATCGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTGCCAGA
CTTGTGTGTGGTACAATCGGATGTTCTACAAGTGGATTGGACAGTTTTGG
CGGAGCTGAGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTTACCAC
ATCACGAGCCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCGGTGCG
TCAAGCCGTGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTACGGCAC
CCACTCGATGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGTTGTAC
ACAAAGCCGCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTATCCCCA
GCCCAAAGTGACCTCAGCCTTGGTGACGCTCGATTTCTTGCAGCCTGCCG
AGGGCAAGCCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGGTGTTA
AATTTAAGTTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTGAAGGG
CTTGCTTGCTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAACGAAGC
GACCCGAGGAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAATTATTA
TTTGGCCCTGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCCGCGAA
TCAGGGTCAGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCATGGGG
GCTTGGAGGAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGTAGAAG
TAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTAGTA
G
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protein sequence of jgi.p|Nanoce1779_2|580570

>mRNA_2497-protein ID=mRNA_2497-protein|Name=jgi.p|Nanoce1779_2|580570|organism=Nannochloropsis oceanica|type=polypeptide|length=438bp
MAAPRRTIRRPVLSSFASMTVLMAAAVALGMQVAHATITMARKSSSSMDR
IGVRQCSCWLSGFVVRSGRSLSHTPRVFRTNTVRLRQVIQQWSSSDGATP
SSSTTTAPSSATSPAAFSDEPTRPPTLPSQEFKPKQSLGQNFLSDQNYVL
KIVTALVDSSPGGRRVVELGPGPGALTRVLHRRYPEMLAVEIDSRAIAVL
NEALPDLCVVQSDVLQVDWTVLAELRGGPLSVIGNLPYHITSQILFCLLD
NHRAVRQAVVTMQLEVAQRITAPTRCKDYGILSVLFQLYTKPRINFKLPP
TVFYPQPKVTSALVTLDFLQPAEGKPLFDVDPAALKQVLNLSFQQRRKML
RQSLKGLLAARDVTLDEEWATKRPEELEPAHFVKLTKLLFGPATAGSNNS
RFSAANQGQRGQTRVWRRARHGGLEEDEKEEEEEEEE*
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mRNA from alignment at scaffold_5:490725..492367-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2497 ID=mRNA_2497|Name=jgi.p|Nanoce1779_2|580570|organism=Nannochloropsis oceanica|type=mRNA|length=1643bp|location=Sequence derived from alignment at scaffold_5:490725..492367- (Nannochloropsis oceanica)
ACAGACAGCATTGGCGGCATCACCGGCCCCAGGATGGCCGCGCCCCGACG
CACAATACGAAGACCTGTCTTGAGCTCGTTTGCAAGCATGACTGTTCTCA
TGGCCGCTGCGGTCGCACTGGGCATGCAGGTAGCCCACGCCACCATCACC
ATGGCAAGAAAGAGTAGCAGCAGTATGGACAGGATAGGAGTTAGACAATG
CTCGTGTTGGCTGTCCGGCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGCC
ACACCCCACGTGTATTCCGCACCAACACTGTCCGCCTAAGACAAGGTCAG
TAAGGGGGGAGAGGACAAAACATGCCAGTGCGCAAAAAGTGCTCGCCTAT
GCAATGATTATGAATAACAATTATCCCTGTCTGTAACAAGACCAAAAGTC
TATGAGGATGATCCAATTTAAGGTAACCGAATGAGCCAAGGCACCACCCC
TAACCAACCCTCCTCAACGCACGCAACAATTTTTGTCCACTCCCTTCTTC
TCATTCACCGCTCTACATACGCCAATATACCACGCAGTCATACAACAATG
GTCCTCATCCGATGGAGCCACTCCCAGCTCCAGCACCACAACCGCTCCCT
CCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCCCACCCGCCCCCCC
ACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCCTCGGTCAAAATTT
TCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACTGCCTTGGTAGATT
CTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCCTGGTCCTGGTGCC
TTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGCTAGCCGTGGAAAT
CGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTGCCAGACTTGTGTG
TGGTACAATCGGATGTTCTACAAGTGGATTGGACAGTTTTGGCGGAGCTG
AGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTTACCACATCACGAG
CCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCGGTGCGTCAAGCCG
TGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTACGGCACCCACTCGA
TGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGTTGTACACAAAGCC
GCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTATCCCCAGCCCAAAG
TGACCTCAGCCTTGGTGACGCTCGATTTCTTGCAGCCTGCCGAGGGCAAG
CCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGGTGTTAAATTTAAG
TTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTGAAGGGCTTGCTTG
CTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAACGAAGCGACCCGAG
GAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAATTATTATTTGGCCC
TGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCCGCGAATCAGGGTC
AGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCATGGGGGCTTGGAG
GAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGTAGAAGTAGTAGTA
GTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTAGTACTAGTAG
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Coding sequence (CDS) from alignment at scaffold_5:490725..492367-

>mRNA_2497 ID=mRNA_2497|Name=jgi.p|Nanoce1779_2|580570|organism=Nannochloropsis oceanica|type=CDS|length=2628bp|location=Sequence derived from alignment at scaffold_5:490725..492367- (Nannochloropsis oceanica)
TCATACAACAATGGTCCTCATCCGATGGAGCCACTCCCAGCTCCAGCACC
ACAACCGCTCCCTCCTCAGCCACCAGCCCTGCGGCTTTCTCCGACGAGCC
CACCCGCCCCCCCACCCTCCCCTCCCAAGAGTTCAAACCAAAGCAATCCC
TCGGTCAAAATTTTCTGTCTGATCAAAATTATGTTTTGAAAATCGTGACT
GCCTTGGTAGATTCTAGCCCGGGAGGGAGACGAGTGGTGGAATTGGGGCC
TGGTCCTGGTGCCTTGACAAGGGTGCTGCATCGACGGTACCCCGAAATGC
TAGCCGTGGAAATCGACTCTCGCGCCATAGCTGTTTTGAACGAGGCCTTG
CCAGACTTGTGTGTGGTACAATCGGATGTTCTACAAGTGGATTGGACAGT
TTTGGCGGAGCTGAGGGGAGGGCCCTTGTCGGTGATAGGAAATTTACCTT
ACCACATCACGAGCCAAATTTTGTTTTGTTTGCTGGACAACCATCGAGCG
GTGCGTCAAGCCGTGGTCACCATGCAGCTGGAGGTAGCACAGCGGATTAC
GGCACCCACTCGATGCAAAGACTATGGGATATTGTCGGTGCTTTTCCAGT
TGTACACAAAGCCGCGAATTAATTTCAAGCTTCCCCCCACAGTCTTCTAT
CCCCAGCCCAAAGTGACCTCAGCCTTGGTGACGCTCGATTTCTTGCAGCC
TGCCGAGGGCAAGCCGCTTTTCGACGTGGACCCCGCGGCACTAAAACAGG
TGTTAAATTTAAGTTTCCAACAGCGGCGCAAGATGTTGCGACAGAGCTTG
AAGGGCTTGCTTGCTGCCCGGGATGTCACATTAGATGAGGAGTGGGCAAC
GAAGCGACCCGAGGAATTAGAGCCCGCCCACTTTGTTAAATTGACCAAAT
TATTATTTGGCCCTGCCACAGCAGGTAGCAATAACAGCCGCTTCAGCGCC
GCGAATCAGGGTCAGAGGGGGCAGACTCGCGTGTGGCGACGAGCGCGCCA
TGGGGGCTTGGAGGAGGACGAGAAGGAGGAGGAGGAGGAGGAGGAGGAGT
AGATGGCCGCGCCCCGACGCACAATACGAAGACCTGTCTTGAGCTCGTTT
GCAAGCATGACTGTTCTCATGGCCGCTGCGGTCGCACTGGGCATGCAGGT
AGCCCACGCCACCATCACCATGGCAAGAAAGAGTAGCAGCAGTATGGACA
GGATAGGAGTTAGACAATGCTCGTGTTGGCTGTCCGGCTTTGTGGTGAGG
AGCGGCCGCAGCCTCAGCCACACCCCACGTGTATTCCGCACCAACACTGT
CCGCCTAAGACAAGTCATACAACAATGGTCCTCATCCGATGGAGCCACTC
CCAGCTCCAGCACCACAACCGCTCCCTCCTCAGCCACCAGCCCTGCGGCT
TTCTCCGACGAGCCCACCCGCCCCCCCACCCTCCCCTCCCAAGAGTTCAA
ACCAAAGCAATCCCTCGGTCAAAATTTTCTGTCTGATCAAAATTATGTTT
TGAAAATCGTGACTGCCTTGGTAGATTCTAGCCCGGGAGGGAGACGAGTG
GTGGAATTGGGGCCTGGTCCTGGTGCCTTGACAAGGGTGCTGCATCGACG
GTACCCCGAAATGCTAGCCGTGGAAATCGACTCTCGCGCCATAGCTGTTT
TGAACGAGGCCTTGCCAGACTTGTGTGTGGTACAATCGGATGTTCTACAA
GTGGATTGGACAGTTTTGGCGGAGCTGAGGGGAGGGCCCTTGTCGGTGAT
AGGAAATTTACCTTACCACATCACGAGCCAAATTTTGTTTTGTTTGCTGG
ACAACCATCGAGCGGTGCGTCAAGCCGTGGTCACCATGCAGCTGGAGGTA
GCACAGCGGATTACGGCACCCACTCGATGCAAAGACTATGGGATATTGTC
GGTGCTTTTCCAGTTGTACACAAAGCCGCGAATTAATTTCAAGCTTCCCC
CCACAGTCTTCTATCCCCAGCCCAAAGTGACCTCAGCCTTGGTGACGCTC
GATTTCTTGCAGCCTGCCGAGGGCAAGCCGCTTTTCGACGTGGACCCCGC
GGCACTAAAACAGGTGTTAAATTTAAGTTTCCAACAGCGGCGCAAGATGT
TGCGACAGAGCTTGAAGGGCTTGCTTGCTGCCCGGGATGTCACATTAGAT
GAGGAGTGGGCAACGAAGCGACCCGAGGAATTAGAGCCCGCCCACTTTGT
TAAATTGACCAAATTATTATTTGGCCCTGCCACAGCAGGTAGCAATAACA
GCCGCTTCAGCGCCGCGAATCAGGGTCAGAGGGGGCAGACTCGCGTGTGG
CGACGAGCGCGCCATGGGGGCTTGGAGGAGGACGAGAAGGAGGAGGAGGA
GGAGGAGGAGGAGTAGATGGCCGCGCCCCGACGCACAATACGAAGACCTG
TCTTGAGCTCGTTTGCAAGCATGACTGTTCTCATGGCCGCTGCGGTCGCA
CTGGGCATGCAGGTAGCCCACGCCACCATCACCATGGCAAGAAAGAGTAG
CAGCAGTATGGACAGGATAGGAGTTAGACAATGCTCGTGTTGGCTGTCCG
GCTTTGTGGTGAGGAGCGGCCGCAGCCTCAGCCACACCCCACGTGTATTC
CGCACCAACACTGTCCGCCTAAGACAAG
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Synonyms
Publications