jgi.p|Nanoce1779_2|580567, mRNA_2496 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580567
Unique NamemRNA_2496
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length600
Alignment locationscaffold_5:489026..489625 -

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Properties
Property NameValue
TranscriptId580653
TrackFilteredModels2
ProteinId580567
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:489026..489625 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580567gene_2496Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580567mRNA_2496-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2496CDS_2496Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2496 ID=mRNA_2496|Name=jgi.p|Nanoce1779_2|580567|organism=Nannochloropsis oceanica|type=mRNA|length=600bp
AGAGGCAACACACAACCAAGTCAGCAATGTTCATCAAGAAGCTGCCTGCA
CTCCTTGTGCTTGCTTTATGCGCCACCAACGCCGCTGCCGCCGGTTACAT
CAAGACGTTTAACGCCTCCAACTACGCCCTGACAACATATGATGCCGCCG
CTGAAAAGCCCCTCCGGGTGAGGCCCAACACCGTGTACACGATCGACAAG
TTCCTCGACGAAGACTTCCACCTCGTTATTCAGTGTCCTCAGCCCAAGAA
TAACCGCATGAGGAAGAAGGGTTTCATCACCTATTTGAGCTATTACCAAG
GCATTGACGAAAGTGCCGTCGAGGTCTATGAGGACGGCAGCGACATCGCA
CAAGCTGAGATGTATAGCATCATTGATGCTGGGTACGGGTCTTTGCTTGT
ACTGTTCTGCAACAATGGCAAGCTTACCTTGAACTACAACTATGCCGGCT
AATGAGAGAACGGGATGCTGAATAATATAATTGAATCAACGGACCAGCTT
CTCATTCCAATCTCCATGTTTTTGCTGTTATGTGTCGTGTTGTGTTGCGG
GGATGTGTGTGTCTTATGTGTCGTGTTGTGTTGCGGGGATGTGTGTGTCT
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protein sequence of jgi.p|Nanoce1779_2|580567

>mRNA_2496-protein ID=mRNA_2496-protein|Name=jgi.p|Nanoce1779_2|580567|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MFIKKLPALLVLALCATNAAAAGYIKTFNASNYALTTYDAAAEKPLRVRP
NTVYTIDKFLDEDFHLVIQCPQPKNNRMRKKGFITYLSYYQGIDESAVEV
YEDGSDIAQAEMYSIIDAGYGSLLVLFCNNGKLTLNYNYAG*
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mRNA from alignment at scaffold_5:489026..489625-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2496 ID=mRNA_2496|Name=jgi.p|Nanoce1779_2|580567|organism=Nannochloropsis oceanica|type=mRNA|length=600bp|location=Sequence derived from alignment at scaffold_5:489026..489625- (Nannochloropsis oceanica)
AGAGGCAACACACAACCAAGTCAGCAATGTTCATCAAGAAGCTGCCTGCA
CTCCTTGTGCTTGCTTTATGCGCCACCAACGCCGCTGCCGCCGGTTACAT
CAAGACGTTTAACGCCTCCAACTACGCCCTGACAACATATGATGCCGCCG
CTGAAAAGCCCCTCCGGGTGAGGCCCAACACCGTGTACACGATCGACAAG
TTCCTCGACGAAGACTTCCACCTCGTTATTCAGTGTCCTCAGCCCAAGAA
TAACCGCATGAGGAAGAAGGGTTTCATCACCTATTTGAGCTATTACCAAG
GCATTGACGAAAGTGCCGTCGAGGTCTATGAGGACGGCAGCGACATCGCA
CAAGCTGAGATGTATAGCATCATTGATGCTGGGTACGGGTCTTTGCTTGT
ACTGTTCTGCAACAATGGCAAGCTTACCTTGAACTACAACTATGCCGGCT
AATGAGAGAACGGGATGCTGAATAATATAATTGAATCAACGGACCAGCTT
CTCATTCCAATCTCCATGTTTTTGCTGTTATGTGTCGTGTTGTGTTGCGG
GGATGTGTGTGTCTTATGTGTCGTGTTGTGTTGCGGGGATGTGTGTGTCT
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Coding sequence (CDS) from alignment at scaffold_5:489026..489625-

>mRNA_2496 ID=mRNA_2496|Name=jgi.p|Nanoce1779_2|580567|organism=Nannochloropsis oceanica|type=CDS|length=426bp|location=Sequence derived from alignment at scaffold_5:489026..489625- (Nannochloropsis oceanica)
ATGTTCATCAAGAAGCTGCCTGCACTCCTTGTGCTTGCTTTATGCGCCAC
CAACGCCGCTGCCGCCGGTTACATCAAGACGTTTAACGCCTCCAACTACG
CCCTGACAACATATGATGCCGCCGCTGAAAAGCCCCTCCGGGTGAGGCCC
AACACCGTGTACACGATCGACAAGTTCCTCGACGAAGACTTCCACCTCGT
TATTCAGTGTCCTCAGCCCAAGAATAACCGCATGAGGAAGAAGGGTTTCA
TCACCTATTTGAGCTATTACCAAGGCATTGACGAAAGTGCCGTCGAGGTC
TATGAGGACGGCAGCGACATCGCACAAGCTGAGATGTATAGCATCATTGA
TGCTGGGTACGGGTCTTTGCTTGTACTGTTCTGCAACAATGGCAAGCTTA
CCTTGAACTACAACTATGCCGGCTAA
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Synonyms
Publications