jgi.p|Nanoce1779_2|580557, mRNA_2493 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580557
Unique NamemRNA_2493
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1238
Alignment locationscaffold_5:480829..482066 +

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Properties
Property NameValue
TranscriptId580643
TrackFilteredModels2
ProteinId580557
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:480829..482066 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580557gene_2493Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580557mRNA_2493-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2493CDS_2493Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2493 ID=mRNA_2493|Name=jgi.p|Nanoce1779_2|580557|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp
CAGCTCATTTACTGGCCACATCGATTGACAGGTAGCCAGCCTCCCGCCGG
GCTTGGACGTCTCCAACCTCCACATGGCCTACTCAAGGCCACTCCTGCTC
CTCCTACCCACCCTCGCGCTAATCCTCGTCCTTCTCGCCGTCCCCGTCCC
CACCTCCGCCTTTCAAATGGGGCGGCCAGGGCTGCTTCCATGCCCCTCTC
ATTCCAAACCCTCTAGCACTCGCAGCAGGCATCGAGGAGGAGTTCAATCT
ACACAAATGATTGCGAATTTCCTGGGTGGCGGTGGGGAACCTAAGGGCAT
CCCTCGTTCTATCAAAGACGGTATCAATGGTCTCCGTTTCGCCATGCAGC
GTGTCCTTCGCGATAGAAAGTCGCGGGTAGAAGTGAACTTGCCTCGAGGC
ACACCGCTTGGAGTCGAAGGTCCTGGGGCAGGCTCGTCTGCTGACGACAA
ATATGAGAAAGCTGATCGAGAGCTGGCACGATTGACTGTGGAGTTGTTTA
AACCCATCATTGAGAATACTGTTGTCATATTCTCGCAAGGCCGGCAAGCA
CGCCGTGCCTCAAGTATCTGGGGTACGGAAGTAGTCAAAACCATGGCTTG
GGACGAAATGACCTCCACGGCAATCAAACGAAAAAATAAAAAGACCAAAA
AAGGCGCAGGGGGCTTTGGTGGCGAGGGGAGAGGAGATAACAGTGCCATG
TCATTACCACCAGGCACGGAAGTGTGCATTGTCGTGGCACCCGGGCCGAA
AGAGTTGAGTGCAGTTAAGAGGCTAAGTGATAGTGTGGGTTTTGACACCT
TGATCATTGTCCTTAATACACCGTTAGAACAAGCTGCACCGTATCTACCC
AAGGATGAGGCCACGGCCCTTCTTTCTGCATTTGAGACTGTCTTCTTCTT
AAATGTATTGAATGACCCCTCCGTCAAAACATTGGACAACATGCTGCTTT
TTAAAAGCTACCCGGGTGAGTGGTTGATTGCACAAAAAGGAGCGCTGGGA
CCACCGCAGGTACTGGCTTCGAAAGCTGAAAGGTTTACAGAGGAGGAGAG
ATTAGTGGCTTTGCGGAAGGGGGCGGAGAACAACGCGAAGCCCCTAATGG
AGAAGTTGACGGTGGGATTGTTTGGTGGTGGGTGAGTGATAGAAGTGGAG
TGAGGGAGTGAAAAGGAGGGTGAGTACAATTAGGATGCAAGTAAATTGGG
CAAAGTGGGGAAAGAAAAGATATCAGATCAGTTGAGAA
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protein sequence of jgi.p|Nanoce1779_2|580557

>mRNA_2493-protein ID=mRNA_2493-protein|Name=jgi.p|Nanoce1779_2|580557|organism=Nannochloropsis oceanica|type=polypeptide|length=354bp
MAYSRPLLLLLPTLALILVLLAVPVPTSAFQMGRPGLLPCPSHSKPSSTR
SRHRGGVQSTQMIANFLGGGGEPKGIPRSIKDGINGLRFAMQRVLRDRKS
RVEVNLPRGTPLGVEGPGAGSSADDKYEKADRELARLTVELFKPIIENTV
VIFSQGRQARRASSIWGTEVVKTMAWDEMTSTAIKRKNKKTKKGAGGFGG
EGRGDNSAMSLPPGTEVCIVVAPGPKELSAVKRLSDSVGFDTLIIVLNTP
LEQAAPYLPKDEATALLSAFETVFFLNVLNDPSVKTLDNMLLFKSYPGEW
LIAQKGALGPPQVLASKAERFTEEERLVALRKGAENNAKPLMEKLTVGLF
GGG*
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mRNA from alignment at scaffold_5:480829..482066+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2493 ID=mRNA_2493|Name=jgi.p|Nanoce1779_2|580557|organism=Nannochloropsis oceanica|type=mRNA|length=1238bp|location=Sequence derived from alignment at scaffold_5:480829..482066+ (Nannochloropsis oceanica)
CAGCTCATTTACTGGCCACATCGATTGACAGGTAGCCAGCCTCCCGCCGG
GCTTGGACGTCTCCAACCTCCACATGGCCTACTCAAGGCCACTCCTGCTC
CTCCTACCCACCCTCGCGCTAATCCTCGTCCTTCTCGCCGTCCCCGTCCC
CACCTCCGCCTTTCAAATGGGGCGGCCAGGGCTGCTTCCATGCCCCTCTC
ATTCCAAACCCTCTAGCACTCGCAGCAGGCATCGAGGAGGAGTTCAATCT
ACACAAATGATTGCGAATTTCCTGGGTGGCGGTGGGGAACCTAAGGGCAT
CCCTCGTTCTATCAAAGACGGTATCAATGGTCTCCGTTTCGCCATGCAGC
GTGTCCTTCGCGATAGAAAGTCGCGGGTAGAAGTGAACTTGCCTCGAGGC
ACACCGCTTGGAGTCGAAGGTCCTGGGGCAGGCTCGTCTGCTGACGACAA
ATATGAGAAAGCTGATCGAGAGCTGGCACGATTGACTGTGGAGTTGTTTA
AACCCATCATTGAGAATACTGTTGTCATATTCTCGCAAGGCCGGCAAGCA
CGCCGTGCCTCAAGTATCTGGGGTACGGAAGTAGTCAAAACCATGGCTTG
GGACGAAATGACCTCCACGGCAATCAAACGAAAAAATAAAAAGACCAAAA
AAGGCGCAGGGGGCTTTGGTGGCGAGGGGAGAGGAGATAACAGTGCCATG
TCATTACCACCAGGCACGGAAGTGTGCATTGTCGTGGCACCCGGGCCGAA
AGAGTTGAGTGCAGTTAAGAGGCTAAGTGATAGTGTGGGTTTTGACACCT
TGATCATTGTCCTTAATACACCGTTAGAACAAGCTGCACCGTATCTACCC
AAGGATGAGGCCACGGCCCTTCTTTCTGCATTTGAGACTGTCTTCTTCTT
AAATGTATTGAATGACCCCTCCGTCAAAACATTGGACAACATGCTGCTTT
TTAAAAGCTACCCGGGTGAGTGGTTGATTGCACAAAAAGGAGCGCTGGGA
CCACCGCAGGTACTGGCTTCGAAAGCTGAAAGGTTTACAGAGGAGGAGAG
ATTAGTGGCTTTGCGGAAGGGGGCGGAGAACAACGCGAAGCCCCTAATGG
AGAAGTTGACGGTGGGATTGTTTGGTGGTGGGTGAGTGATAGAAGTGGAG
TGAGGGAGTGAAAAGGAGGGTGAGTACAATTAGGATGCAAGTAAATTGGG
CAAAGTGGGGAAAGAAAAGATATCAGATCAGTTGAGAA
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Coding sequence (CDS) from alignment at scaffold_5:480829..482066+

>mRNA_2493 ID=mRNA_2493|Name=jgi.p|Nanoce1779_2|580557|organism=Nannochloropsis oceanica|type=CDS|length=1062bp|location=Sequence derived from alignment at scaffold_5:480829..482066+ (Nannochloropsis oceanica)
ATGGCCTACTCAAGGCCACTCCTGCTCCTCCTACCCACCCTCGCGCTAAT
CCTCGTCCTTCTCGCCGTCCCCGTCCCCACCTCCGCCTTTCAAATGGGGC
GGCCAGGGCTGCTTCCATGCCCCTCTCATTCCAAACCCTCTAGCACTCGC
AGCAGGCATCGAGGAGGAGTTCAATCTACACAAATGATTGCGAATTTCCT
GGGTGGCGGTGGGGAACCTAAGGGCATCCCTCGTTCTATCAAAGACGGTA
TCAATGGTCTCCGTTTCGCCATGCAGCGTGTCCTTCGCGATAGAAAGTCG
CGGGTAGAAGTGAACTTGCCTCGAGGCACACCGCTTGGAGTCGAAGGTCC
TGGGGCAGGCTCGTCTGCTGACGACAAATATGAGAAAGCTGATCGAGAGC
TGGCACGATTGACTGTGGAGTTGTTTAAACCCATCATTGAGAATACTGTT
GTCATATTCTCGCAAGGCCGGCAAGCACGCCGTGCCTCAAGTATCTGGGG
TACGGAAGTAGTCAAAACCATGGCTTGGGACGAAATGACCTCCACGGCAA
TCAAACGAAAAAATAAAAAGACCAAAAAAGGCGCAGGGGGCTTTGGTGGC
GAGGGGAGAGGAGATAACAGTGCCATGTCATTACCACCAGGCACGGAAGT
GTGCATTGTCGTGGCACCCGGGCCGAAAGAGTTGAGTGCAGTTAAGAGGC
TAAGTGATAGTGTGGGTTTTGACACCTTGATCATTGTCCTTAATACACCG
TTAGAACAAGCTGCACCGTATCTACCCAAGGATGAGGCCACGGCCCTTCT
TTCTGCATTTGAGACTGTCTTCTTCTTAAATGTATTGAATGACCCCTCCG
TCAAAACATTGGACAACATGCTGCTTTTTAAAAGCTACCCGGGTGAGTGG
TTGATTGCACAAAAAGGAGCGCTGGGACCACCGCAGGTACTGGCTTCGAA
AGCTGAAAGGTTTACAGAGGAGGAGAGATTAGTGGCTTTGCGGAAGGGGG
CGGAGAACAACGCGAAGCCCCTAATGGAGAAGTTGACGGTGGGATTGTTT
GGTGGTGGGTGA
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Synonyms
Publications