Properties
| Property Name | Value |
|---|
| TranscriptId | 628624 |
| Track | FilteredModels2 |
| ProteinId | 628538 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:478088..480449 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2492 ID=mRNA_2492|Name=jgi.p|Nanoce1779_2|628538|organism=Nannochloropsis oceanica|type=mRNA|length=1554bp
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCGTGCCACCA
CTTCTGTAGACGCACCGGTAGTACCGCCTCCATGCGAAACGTCTTCAACT
TTTGGTAGGCGAACGAGGGCCGGCGGGGTGTCAGACACTCCCTCCCTTCC
TTGCCCCCCGGAGGCCGCTTCCCCTACTGCTGCTCTTGCTGGTGCTGTTC
TCCCCTCCCCGACCACACGCAGCAGCAGGACACTCCCCTCTCCCTCTACT
CGCAGCAGCTCTAGCAGTAGTGTCCCTTCCTATCCTTCCCCACGCACCAC
ACGGCGTAGCGCTGTGTCCGTGCCCGTTGACAACGCCCCCCCTTTGCCAA
CCATGTCACTCCCTCCCTATCACCGAAAAAGTTCCTCTGCTGCGAACGAG
GAGGAGGCGGCAATGGAATTTTCTGTTTCCGCAGTAAACATCAAGAAGAC
TGTGAACGAAAAGGAAGCGGAGGGGGATAAGCAGGCCGCTGGGCCTCAGG
AGCATGCACCGGAGATAGAGGAAGAAGCAGGGAGCGTAAAGGAGGAGAAA
GGGTCAAGAGAGAAGAGAGAGAAGGAATTCCCAACGACGGCTAAAGCCTC
CTCACCACTGTTACCCTCTCAGCTTCCATATCTGCCGCAATCACATGAAA
CTATGGACGTGGAGGAACAAGATGAGGAGCATCTGCAGCCTCAGCAACAG
CAAGATGGGCCTGAGGAGGAGCAAGATGAGGAAGACAAGGGTGGAGGTCG
AGGAAAGGGGAAGGGTGGTAGTGGGAGCACGAATATGTCAGCTAAGAGGA
AAGGGGCTGCTGCTGCATCTCCGCGGGTCGGTAGCGCAAAGCGGGGGAGG
CTGTCTCGACATGTGGCCAAGAAGAACGAAGCGGAGGACGAAGGAGAGGA
CAACGGGGATGAAGGTCCTGTGCGATCACCATCGCCGCCACCACTGATGC
TCTCCCGGCCACGACAAGAAGTCGGCCCACAAGGGGATAATAAAGAGAGG
GAGGAGGAGGAGCAGCAGCAGCAGCACCAGCACGAGGACCCGCACCAACG
ACAGGAGGAGGAGCAGGAGCATGTTGAACAACGCGCCCCGACGGCAAAGG
CAATGGAGGAGCAGGCTGATGGGTCGATGCGCAAGTTGGAGGTGGAGGGA
AGGGGAGGGAGCAAGGCAGGTTACAATACTTCAAAGCGCCAGGGGAAAAG
CGATCAACAAGGTACAGTCCTCGGGCCGCCCTCGATCACTCAAACAATCA
CCACCGAGACCACCTCCATGGGCAGCAACAAGAGGAAAGGCAAAAGCAAG
GTTACTGGGCCGAAGGACGGAGGGGAAGCAGGGGTAGGGATAGATTTGGA
GAAAGAGGAGGTGGGAGAAATGGAGAAGATTAAGATGGTAGTGAAGGTGC
TGTGGTGTCGACCATGGGGTTGACGGCCATGAGTCGGATTCCTAAAAAGA
CGAGTAGCATCACCGCCAGCACCAGCAGCAGCAGCAAAGGAGGAAGGGGA
GCAACAGCAGCAGCGTCTGAAGTCATCCCTTCGTCCTCGTCCTCGTCCTC
GTCC back to topprotein sequence of jgi.p|Nanoce1779_2|628538 >mRNA_2492-protein ID=mRNA_2492-protein|Name=jgi.p|Nanoce1779_2|628538|organism=Nannochloropsis oceanica|type=polypeptide|length=357bp
MSLPPYHRKSSSAANEEEAAMEFSVSAVNIKKTVNEKEAEGDKQAAGPQE
HAPEIEEEAGSVKEEKGSREKREKEFPTTAKASSPLLPSQLPYLPQSHET
MDVEEQDEEHLQPQQQQDGPEEEQDEEDKGGGRGKGKGGSGSTNMSAKRK
GAAAASPRVGSAKRGRLSRHVAKKNEAEDEGEDNGDEGPVRSPSPPPLML
SRPRQEVGPQGDNKEREEEEQQQQHQHEDPHQRQEEEQEHVEQRAPTAKA
MEEQADGSMRKLEVEGRGGSKAGYNTSKRQGKSDQQGTVLGPPSITQTIT
TETTSMGSNKRKGKSKVTGPKDGGEAGVGIDLEKEEVGEMEKIKMVVKVL
WCRPWG* back to topmRNA from alignment at scaffold_5:478088..480449- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2492 ID=mRNA_2492|Name=jgi.p|Nanoce1779_2|628538|organism=Nannochloropsis oceanica|type=mRNA|length=2362bp|location=Sequence derived from alignment at scaffold_5:478088..480449- (Nannochloropsis oceanica)
AGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACCCGTGCCACCA
CTTCTGTAGACGCACCGGTAGTACCGCCTCCATGCGAAACGTCTTCAACT
TTTGGTAGGCGAACGAGGGCCGGCGGGGTGTCAGACACTCCCTCCCTTCC
TTGCCCCCCGGAGGCCGCTTCCCCTACTGCTGCTCTTGCTGGTGCTGTTC
TCCCCTCCCCGACCACACGCAGCAGCAGGACACTCCCCTCTCCCTCTACT
CGCAGCAGCTCTAGCAGTAGTGTCCCTTCCTATCCTTCCCCACGCACCAC
ACGGCGTAGCGCTGTGTCCGTGCCCGTTGACAACGCCCCCCCTTTGCCAA
CCATGTCACTCCCTCCCTATCACCGAAAAAGTTCCTCTGCTGCGAACGAG
GAGGAGGCGGCAATGGAATTTTCTGTTTCCGCAGTAAACATCAAGAAGAC
TGTGAACGAAAAGGAAGCGGAGGGGGATAAGCAGGCCGCTGGGCCTCAGG
AGCATGCACCGGAGATAGAGGAAGAAGCAGGGAGCGTAAAGGAGGAGAAA
GGGTCAAGAGAGAAGAGAGAGAAGGAATTCCCAACGACGGCTAAAGCCTC
CTCACCACTGTTACCCTCTCAGCTTCCATATCTGCCGCAATCACATGAAA
CTATGGACGTGGAGGAACAAGATGAGGAGCATCTGCAGCCTCAGCAACAG
CAAGATGGGCCTGAGGAGGAGCAAGATGAGGAAGACAAGGGTGGAGGTCG
AGGAAAGGGGAAGGGTGGTAGTGGGAGCACGAATATGTCAGCTAAGAGGA
AAGGGGCTGCTGCTGCATCTCCGCGGGTCGGTAGCGCAAAGCGGGGGAGG
CTGTCTCGACATGTGGCCAAGAAGAACGAAGCGGAGGACGAAGGAGAGGA
CAACGGGGGTGAGGAAAAGACGGTGATGACTGAGGCATCGACAGCAGCAG
CGTCAGCAGGAACAATAGAGGCACCAGCAGAAAAGGAAGAGGAAATAGGA
GGGTTCATGACAGGGGAGCCTGATGAGGAGGAAGAGGGGCAACAGCAGCA
GCTGCAGCTGCGGCGGCAGGAGTTATTGGAGCCTGTAGCAGTAGCAGAAG
CATCATTAATAGAGGAGCAAAATAAGAAAATAAGAGCAGAGAAGAAAATG
AAAAGGAAACAAGAGCATGAGAATAAGGAGGAGGGAGATGAAGGTCCTGT
GCGATCACCATCGCCGCCACCACTGATGCTCTCCCGGCCACGACAAGAAG
TCGGCCCACAAGGGGATAATAAAGAGAGGGAGGAGGAGGAGCAGCAGCAG
CAGCACCAGCACGAGGACCCGCACCAACGACAGGAGGAGGAGCAGGAGCA
TGTTGAACAACGCGCCCCGACGGCAAAGGCAATGGAGGAGCAGGCTGATG
GGTCGATGCGCAAGTTGGAGGTGGAGGGAAGGGGAGGGAGCAAGGCAGGT
TACAATACTTCAAAGCGCCAGGGGAAAAGCGATCAACAAGGTACAGTCCT
CGGGCCGCCCTCGATCACTCAAACAATCACCACCGAGACCACCTCCATGG
GCAGCAACAAGAGGAAAGGCAAAAGCAAGGTTACTGGGCCGAAGGACGGA
GGGGAAGCAGGGGTAGGGATAGATTTGGAGAAAGAGGAGGTGGGAGAAAT
GGAGAAGATTAAGATGGTAGTGAAGGGTGAGGCAATGCTCTTGACCACGC
CTTCCCTCGTGCAGAAAGGAGTGGCGAAGGACGAGGAGGAGGGCAACGGC
AAGGACAGTGTCCCTTCCGCCTCTCCCGCGATTCCACCCATTGCCGCTCC
AGCCTCCCTACCCAACGAGGCAGCAGCAGCAGCAACAGCAGCCACAGCAG
CAGCAGCAACAGCAGCAGTAGCAGTAGCAGCAGCAGCAACAGTAAATACA
AATGAAATGCACCCCGCCGCGCCAGTGAAAAAAGACGTGGATATCCTCCA
CGATCACACGCTTGCGCCTGTTCCTGTTATGATGCCTCCTCCTCCTTCTG
CTGCTGCTCCTGTTGCTGCCACTCCTGCTGTTGGAAAAGATAAGTGGGAT
CTAGTCGGAACAGAGACAGACAGGGATCGGAAAAAGAGGCTCAAGCTGCA
GAAAGAGCAGCAGCAGCAGCATTTTGCATCGTCGACTCTGGGGTTTGATG
ATATGAAAAGTACTTCTCAGGCTACTGCTGCTACCACTGATACTTCCGCT
TCCAGTGCTGTGGTGTCGACCATGGGGTTGACGGCCATGAGTCGGATTCC
TAAAAAGACGAGTAGCATCACCGCCAGCACCAGCAGCAGCAGCAAAGGAG
GAAGGGGAGCAACAGCAGCAGCGTCTGAAGTCATCCCTTCGTCCTCGTCC
TCGTCCTCGTCC back to topCoding sequence (CDS) from alignment at scaffold_5:478088..480449- >mRNA_2492 ID=mRNA_2492|Name=jgi.p|Nanoce1779_2|628538|organism=Nannochloropsis oceanica|type=CDS|length=3213bp|location=Sequence derived from alignment at scaffold_5:478088..480449- (Nannochloropsis oceanica)
TGCTGTGGTGTCGACCATGGGGTTGAATGAAGGTCCTGTGCGATCACCAT
CGCCGCCACCACTGATGCTCTCCCGGCCACGACAAGAAGTCGGCCCACAA
GGGGATAATAAAGAGAGGGAGGAGGAGGAGCAGCAGCAGCAGCACCAGCA
CGAGGACCCGCACCAACGACAGGAGGAGGAGCAGGAGCATGTTGAACAAC
GCGCCCCGACGGCAAAGGCAATGGAGGAGCAGGCTGATGGGTCGATGCGC
AAGTTGGAGGTGGAGGGAAGGGGAGGGAGCAAGGCAGGTTACAATACTTC
AAAGCGCCAGGGGAAAAGCGATCAACAAGGTACAGTCCTCGGGCCGCCCT
CGATCACTCAAACAATCACCACCGAGACCACCTCCATGGGCAGCAACAAG
AGGAAAGGCAAAAGCAAGGTTACTGGGCCGAAGGACGGAGGGGAAGCAGG
GGTAGGGATAGATTTGGAGAAAGAGGAGGTGGGAGAAATGGAGAAGATTA
AGATGGTAGTGAAGGATGTCACTCCCTCCCTATCACCGAAAAAGTTCCTC
TGCTGCGAACGAGGAGGAGGCGGCAATGGAATTTTCTGTTTCCGCAGTAA
ACATCAAGAAGACTGTGAACGAAAAGGAAGCGGAGGGGGATAAGCAGGCC
GCTGGGCCTCAGGAGCATGCACCGGAGATAGAGGAAGAAGCAGGGAGCGT
AAAGGAGGAGAAAGGGTCAAGAGAGAAGAGAGAGAAGGAATTCCCAACGA
CGGCTAAAGCCTCCTCACCACTGTTACCCTCTCAGCTTCCATATCTGCCG
CAATCACATGAAACTATGGACGTGGAGGAACAAGATGAGGAGCATCTGCA
GCCTCAGCAACAGCAAGATGGGCCTGAGGAGGAGCAAGATGAGGAAGACA
AGGGTGGAGGTCGAGGAAAGGGGAAGGGTGGTAGTGGGAGCACGAATATG
TCAGCTAAGAGGAAAGGGGCTGCTGCTGCATCTCCGCGGGTCGGTAGCGC
AAAGCGGGGGAGGCTGTCTCGACATGTGGCCAAGAAGAACGAAGCGGAGG
ACGAAGGAGAGGACAACGGGGTGCTGTGGTGTCGACCATGGGGTTGAATG
AAGGTCCTGTGCGATCACCATCGCCGCCACCACTGATGCTCTCCCGGCCA
CGACAAGAAGTCGGCCCACAAGGGGATAATAAAGAGAGGGAGGAGGAGGA
GCAGCAGCAGCAGCACCAGCACGAGGACCCGCACCAACGACAGGAGGAGG
AGCAGGAGCATGTTGAACAACGCGCCCCGACGGCAAAGGCAATGGAGGAG
CAGGCTGATGGGTCGATGCGCAAGTTGGAGGTGGAGGGAAGGGGAGGGAG
CAAGGCAGGTTACAATACTTCAAAGCGCCAGGGGAAAAGCGATCAACAAG
GTACAGTCCTCGGGCCGCCCTCGATCACTCAAACAATCACCACCGAGACC
ACCTCCATGGGCAGCAACAAGAGGAAAGGCAAAAGCAAGGTTACTGGGCC
GAAGGACGGAGGGGAAGCAGGGGTAGGGATAGATTTGGAGAAAGAGGAGG
TGGGAGAAATGGAGAAGATTAAGATGGTAGTGAAGGATGTCACTCCCTCC
CTATCACCGAAAAAGTTCCTCTGCTGCGAACGAGGAGGAGGCGGCAATGG
AATTTTCTGTTTCCGCAGTAAACATCAAGAAGACTGTGAACGAAAAGGAA
GCGGAGGGGGATAAGCAGGCCGCTGGGCCTCAGGAGCATGCACCGGAGAT
AGAGGAAGAAGCAGGGAGCGTAAAGGAGGAGAAAGGGTCAAGAGAGAAGA
GAGAGAAGGAATTCCCAACGACGGCTAAAGCCTCCTCACCACTGTTACCC
TCTCAGCTTCCATATCTGCCGCAATCACATGAAACTATGGACGTGGAGGA
ACAAGATGAGGAGCATCTGCAGCCTCAGCAACAGCAAGATGGGCCTGAGG
AGGAGCAAGATGAGGAAGACAAGGGTGGAGGTCGAGGAAAGGGGAAGGGT
GGTAGTGGGAGCACGAATATGTCAGCTAAGAGGAAAGGGGCTGCTGCTGC
ATCTCCGCGGGTCGGTAGCGCAAAGCGGGGGAGGCTGTCTCGACATGTGG
CCAAGAAGAACGAAGCGGAGGACGAAGGAGAGGACAACGGGGTGCTGTGG
TGTCGACCATGGGGTTGAATGAAGGTCCTGTGCGATCACCATCGCCGCCA
CCACTGATGCTCTCCCGGCCACGACAAGAAGTCGGCCCACAAGGGGATAA
TAAAGAGAGGGAGGAGGAGGAGCAGCAGCAGCAGCACCAGCACGAGGACC
CGCACCAACGACAGGAGGAGGAGCAGGAGCATGTTGAACAACGCGCCCCG
ACGGCAAAGGCAATGGAGGAGCAGGCTGATGGGTCGATGCGCAAGTTGGA
GGTGGAGGGAAGGGGAGGGAGCAAGGCAGGTTACAATACTTCAAAGCGCC
AGGGGAAAAGCGATCAACAAGGTACAGTCCTCGGGCCGCCCTCGATCACT
CAAACAATCACCACCGAGACCACCTCCATGGGCAGCAACAAGAGGAAAGG
CAAAAGCAAGGTTACTGGGCCGAAGGACGGAGGGGAAGCAGGGGTAGGGA
TAGATTTGGAGAAAGAGGAGGTGGGAGAAATGGAGAAGATTAAGATGGTA
GTGAAGGATGTCACTCCCTCCCTATCACCGAAAAAGTTCCTCTGCTGCGA
ACGAGGAGGAGGCGGCAATGGAATTTTCTGTTTCCGCAGTAAACATCAAG
AAGACTGTGAACGAAAAGGAAGCGGAGGGGGATAAGCAGGCCGCTGGGCC
TCAGGAGCATGCACCGGAGATAGAGGAAGAAGCAGGGAGCGTAAAGGAGG
AGAAAGGGTCAAGAGAGAAGAGAGAGAAGGAATTCCCAACGACGGCTAAA
GCCTCCTCACCACTGTTACCCTCTCAGCTTCCATATCTGCCGCAATCACA
TGAAACTATGGACGTGGAGGAACAAGATGAGGAGCATCTGCAGCCTCAGC
AACAGCAAGATGGGCCTGAGGAGGAGCAAGATGAGGAAGACAAGGGTGGA
GGTCGAGGAAAGGGGAAGGGTGGTAGTGGGAGCACGAATATGTCAGCTAA
GAGGAAAGGGGCTGCTGCTGCATCTCCGCGGGTCGGTAGCGCAAAGCGGG
GGAGGCTGTCTCGACATGTGGCCAAGAAGAACGAAGCGGAGGACGAAGGA
GAGGACAACGGGG back to top
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