jgi.p|Nanoce1779_2|580550, mRNA_2491 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580550
Unique NamemRNA_2491
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1286
Alignment locationscaffold_5:475739..477164 +

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Properties
Property NameValue
TranscriptId580636
TrackFilteredModels2
ProteinId580550
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:475739..477164 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580550gene_2491Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580550mRNA_2491-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2491CDS_2491Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2491 ID=mRNA_2491|Name=jgi.p|Nanoce1779_2|580550|organism=Nannochloropsis oceanica|type=mRNA|length=1286bp
ACAGACAACGGTGTTTATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTG
CGTCTTGCGGCTGCCGTTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAAC
ATTCTGCTTCCCAGAATTACGCCAGGTGTCGCTGCTTTTACCATGGTTAG
TGTCAAGCGCAGAAAGGCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGC
ACAAGAAGGCTCCTGCAACTGCCGCATTCGTCGTGCGCACGACAGCAACA
TTCGCTCAGAGCAGCGGCACCGACAGTGGTACCAGCAGCAGCACCAGCAT
CAGCACCACCACCAGCACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTG
GCGGCTTGCTCGAGAAATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATA
CTCGTTGGCCACAATCCATCGGCCGCAGCGTGGCGCGACGGGCACTACTA
CTCAAATCCTTCCAATCGTATGTGGCGTCTACTCAGCGGCGCAGGCATAA
TACCTGCAAATTATACGGCTCTAGATGACGACAAATGCCCCGCAACCTGC
GGCATAGGTTTCACGGATTTGGGTCACGGTATACCAGGCACCGACTCTAG
CCAGTTCAGACCCAAAGTTCTTCACATGTGGAGGGAGAGTCTCTATCAAC
GCTTACGAGGACATTCTGACCGTGCCGGAGCACCACCAAAAATTGTCGCT
TTTACAGGGAAACGTCAATTTAAAGAGCTCTTCTACGATTCACCTGCATA
CAAAAAAAAAGGTCTCATTTCGTATGGTCTTCAAACCATGCGCCCGGAAG
GCTTTCCATTCACGGTCGAGGAGACGCAGTTGTTTGTGTTGACATCGTCG
AGTGGAGCGGCGGCCATGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGA
ATTGGCTGTTTTGCTGCAACAGTTCCCATGGGGTGCCCCGCCGCCCACGA
AGACAACAAGGGGGAGAAATTTGAAATAAGGTGTGTGTAATCGTCGGGTG
TATAGCTCGCGATGTTTCCAAAATTGAGTTGAATCCTAAAATGCAACACA
TAAAGTAATTGAAAAAGAAGATAGAACGGAGAAAATATAGATATGTATGT
TGATTACCAAGGCCTGCTCAACCCCCTTCTACAACCCACTACCCTCAAAC
ACACATCGCACGGTCCAGCAATCCGTCAGCCACTTTCGAATATAATGCTT
CATGCCTTTCTTCATTTGAGAAAGCCATGATTTTTTTAATTTTCCTCATT
TTTTTCTTTTGTCCGTTTCTCACCTTCGGTATCCCC
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protein sequence of jgi.p|Nanoce1779_2|580550

>mRNA_2491-protein ID=mRNA_2491-protein|Name=jgi.p|Nanoce1779_2|580550|organism=Nannochloropsis oceanica|type=polypeptide|length=321bp
MPATRGGWFFSASCGCRSVCLSCLFIVNILLPRITPGVAAFTMVSVKRRK
APVASALIAGMHKKAPATAAFVVRTTATFAQSSGTDSGTSSSTSISTTTS
TSSCKSSSASGGGLLEKFGSPEIPLRLILVGHNPSAAAWRDGHYYSNPSN
RMWRLLSGAGIIPANYTALDDDKCPATCGIGFTDLGHGIPGTDSSQFRPK
VLHMWRESLYQRLRGHSDRAGAPPKIVAFTGKRQFKELFYDSPAYKKKGL
ISYGLQTMRPEGFPFTVEETQLFVLTSSSGAAAMSNEAREAPYKELAVLL
QQFPWGAPPPTKTTRGRNLK*
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mRNA from alignment at scaffold_5:475739..477164+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2491 ID=mRNA_2491|Name=jgi.p|Nanoce1779_2|580550|organism=Nannochloropsis oceanica|type=mRNA|length=1426bp|location=Sequence derived from alignment at scaffold_5:475739..477164+ (Nannochloropsis oceanica)
ACAGACAACGGTGTTTATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTG
CGTCTTGCGGCTGCCGTTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAAC
ATTCTGCTTCCCAGAATTACGCCAGGTGTCGCTGCTTTTACCATGGTTAG
TGTCAAGCGCAGAAAGGCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGC
ACAAGAAGGCTCCTGCAACTGCCGCATTCGTCGTGCGCACGACAGCAACA
TTCGCTCAGAGCAGCGGCACCGACAGTGGTACCAGCAGCAGCACCAGCAT
CAGCACCACCACCAGCACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTG
GCGGCTTGCTCGAGAAATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATA
CTCGTTGGCCACAATCCATCGGCCGCAGCGTGGCGCGACGGGCACTACTA
CTCAAATCCTTCCAATCGTATGTGGCGTCTACTCAGCGGCGCAGGCATAA
TACCTGCAAATTATACGGCTCTAGATGACGACAAATGCCCCGCAACCTGC
GGCATAGGTTTCACGGATTTGGTGCGTACTCTTTCTTGTGACATTATGGC
TAGCGTTGCTAGTCGATTGCTCTCTTATCCCCTCGCTCTTCTTCCTCCTT
CCCCCCCGTTTTTTTTCGATCGACCCTAACGAGATCTTCTTTCATAATTC
ATAATTAAAAGGGTCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGA
CCCAAAGTTCTTCACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGG
ACATTCTGACCGTGCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGA
AACGTCAATTTAAAGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAA
GGTCTCATTTCGTATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATT
CACGGTCGAGGAGACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGG
CGGCCATGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTT
TTGCTGCAACAGTTCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAG
GGGGAGAAATTTGAAATAAGGTGTGTGTAATCGTCGGGTGTATAGCTCGC
GATGTTTCCAAAATTGAGTTGAATCCTAAAATGCAACACATAAAGTAATT
GAAAAAGAAGATAGAACGGAGAAAATATAGATATGTATGTTGATTACCAA
GGCCTGCTCAACCCCCTTCTACAACCCACTACCCTCAAACACACATCGCA
CGGTCCAGCAATCCGTCAGCCACTTTCGAATATAATGCTTCATGCCTTTC
TTCATTTGAGAAAGCCATGATTTTTTTAATTTTCCTCATTTTTTTCTTTT
GTCCGTTTCTCACCTTCGGTATCCCC
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Coding sequence (CDS) from alignment at scaffold_5:475739..477164+

>mRNA_2491 ID=mRNA_2491|Name=jgi.p|Nanoce1779_2|580550|organism=Nannochloropsis oceanica|type=CDS|length=1926bp|location=Sequence derived from alignment at scaffold_5:475739..477164+ (Nannochloropsis oceanica)
ATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTGCGTCTTGCGGCTGCCG
TTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAACATTCTGCTTCCCAGAA
TTACGCCAGGTGTCGCTGCTTTTACCATGGTTAGTGTCAAGCGCAGAAAG
GCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGCACAAGAAGGCTCCTGC
AACTGCCGCATTCGTCGTGCGCACGACAGCAACATTCGCTCAGAGCAGCG
GCACCGACAGTGGTACCAGCAGCAGCACCAGCATCAGCACCACCACCAGC
ACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTGGCGGCTTGCTCGAGAA
ATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATACTCGTTGGCCACAATC
CATCGGCCGCAGCGTGGCGCGACGGGCACTACTACTCAAATCCTTCCAAT
CGTATGTGGCGTCTACTCAGCGGCGCAGGCATAATACCTGCAAATTATAC
GGCTCTAGATGACGACAAATGCCCCGCAACCTGCGGCATAGGTTTCACGG
ATTTGGGTCACGGTATACCAGGCACCGACTCTAGCCAGTTCAGACCCAAA
GTTCTTCACATGTGGAGGGAGAGTCTCTATCAACGCTTACGAGGACATTC
TGACCGTGCCGGAGCACCACCAAAAATTGTCGCTTTTACAGGGAAACGTC
AATTTAAAGAGCTCTTCTACGATTCACCTGCATACAAAAAAAAAGGTCTC
ATTTCGTATGGTCTTCAAACCATGCGCCCGGAAGGCTTTCCATTCACGGT
CGAGGAGACGCAGTTGTTTGTGTTGACATCGTCGAGTGGAGCGGCGGCCA
TGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGAATTGGCTGTTTTGCTG
CAACAGTTCCCATGGGGTGCCCCGCCGCCCACGAAGACAACAAGGGGGAG
AAATTTGAAATAAATGCCTGCAACGCGTGGTGGCTGGTTCTTCTCTGCGT
CTTGCGGCTGCCGTTCCGTGTGTCTGAGCTGCCTCTTCATCGTCAACATT
CTGCTTCCCAGAATTACGCCAGGTGTCGCTGCTTTTACCATGGTTAGTGT
CAAGCGCAGAAAGGCTCCTGTCGCCTCCGCTCTTATAGCTGGCATGCACA
AGAAGGCTCCTGCAACTGCCGCATTCGTCGTGCGCACGACAGCAACATTC
GCTCAGAGCAGCGGCACCGACAGTGGTACCAGCAGCAGCACCAGCATCAG
CACCACCACCAGCACAAGCAGCTGCAAAAGCAGCAGCGCTAGTGGTGGCG
GCTTGCTCGAGAAATTTGGGTCGCCTGAAATTCCCTTGCGTCTTATACTC
GTTGGCCACAATCCATCGGCCGCAGCGTGGCGCGACGGGCACTACTACTC
AAATCCTTCCAATCGTATGTGGCGTCTACTCAGCGGCGCAGGCATAATAC
CTGCAAATTATACGGCTCTAGATGACGACAAATGCCCCGCAACCTGCGGC
ATAGGTTTCACGGATTTGGGTCACGGTATACCAGGCACCGACTCTAGCCA
GTTCAGACCCAAAGTTCTTCACATGTGGAGGGAGAGTCTCTATCAACGCT
TACGAGGACATTCTGACCGTGCCGGAGCACCACCAAAAATTGTCGCTTTT
ACAGGGAAACGTCAATTTAAAGAGCTCTTCTACGATTCACCTGCATACAA
AAAAAAAGGTCTCATTTCGTATGGTCTTCAAACCATGCGCCCGGAAGGCT
TTCCATTCACGGTCGAGGAGACGCAGTTGTTTGTGTTGACATCGTCGAGT
GGAGCGGCGGCCATGAGTAATGAGGCTCGAGAGGCGCCGTACAAGGAATT
GGCTGTTTTGCTGCAACAGTTCCCATGGGGTGCCCCGCCGCCCACGAAGA
CAACAAGGGGGAGAAATTTGAAATAA
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Synonyms
Publications