jgi.p|Nanoce1779_2|330459, mRNA_2490 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|330459
Unique NamemRNA_2490
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1122
Alignment locationscaffold_5:472882..474003 +

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Properties
Property NameValue
TranscriptId330545
TrackFilteredModels2
ProteinId330459
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:472882..474003 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330459gene_2490Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|330459mRNA_2490-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2490CDS_2490Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2490 ID=mRNA_2490|Name=jgi.p|Nanoce1779_2|330459|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp
GATCGTACTTTACCAGCTTAGGTCCAAGCAATTTGGCCATTGGGTGCTCT
TTCTGTGCCGCTGTCAGCGTGCTTTCGTCCAGCTCCTGCACCGGCTCGAC
CTCGAAAACCTCTTCAGGCTCATCTACTTCCTCCTGCTCCCCGCTGGCAC
TACCTGCGGCCGTGGGCGGTGGCGGTGCTGTCGTCGTAGCTCCACGAGGA
GCCTTAGCATCGCTTTTGCCTCCCTTTATGCCGCTCTCGACAAAGGATGA
CGTGCTGCTGCTCCCTCCTGAGGTAGTGCTGCTACGGCCCGCCATGGACG
AGCGCCGCGAGGGAGCTGACTCATGCTGCAGCTGCTTGGCCTTGATTGCC
CGCCGAGCAAACGACACCCCTGCTCCACCTGCGGCCGCCACTCCCGCTCC
AACCAACGCCTTGAGAGCCAAGGCCGCCAGGCTGGGACCCTCCTCCTCCT
CTTCGTACTCGTACTCCTCCTCTCCCCATCCTGAGAAGCGATTGAAAAGA
GTAGCAGGGCTAAAACTAGGCCCCGACGCCTGCACGGCCCCCACAGCTGC
TCCGAGGAACAGGACCAAGCTGGTTGTCTTCATTTTTCTGCCATGTGATT
ATGTAGGGTGGAGTGTGAAATGCGGACGGGGAGTTGAGGGGTGGAACGCA
AAGTATCTCATCATGGCAACAGCAACTCCAAGTTGGTTGATCCACAAGCC
GTGTTGGGTCGCGGGGGAGGCAAGCATGAAGATGAGGGCAGATAAGCGGT
ATCCCCTAAATACATTTATAGACTTCCATCGTAACCTTTCTTTACTCTTT
TCTTTGAGCAGGGAGACCTGGTATATAATGAGGGACAGGGAATACGAGGC
ACGGCAAGGCTCTGCTTCATTCCTCGCCGCGAATTTCACTTTTTTGGCGC
GAGACACATTTTCCAACGCCTAGCAAACAAACGGGCTGGTGGAAAGAAGC
GAGGCTCCCTCCCCCACGAGCAAGAGCGTCGTCAAGTCGATATGGCCCTA
CGTTAGGATATTCATCCATAATGAAATATGCAAAGCACCTCCAATGGTGG
CTTTCCTCCGTTCTTGACGCCCTGGGTACCTTGCGTCGTGTTCGGCCCAT
GTTTCTTGTTTGTCTCTTGACA
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protein sequence of jgi.p|Nanoce1779_2|330459

>mRNA_2490-protein ID=mRNA_2490-protein|Name=jgi.p|Nanoce1779_2|330459|organism=Nannochloropsis oceanica|type=polypeptide|length=232bp
MPLSTKDDVLLLPPEVVLLRPAMDERREGADSCCSCLALIARRANDTPAP
PAAATPAPTNALRAKAARLGPSSSSSYSYSSSPHPEKRLKRVAGLKLGPD
ACTAPTAAPRNRTKLVVFIFLPCDYVGWSVKCGRGVEGWNAKYLIMATAT
PSWLIHKPCWVAGEASMKMRADKRYPLNTFIDFHRNLSLLFSLSRETWYI
MRDREYEARQGSASFLAANFTFLARDTFSNA*
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mRNA from alignment at scaffold_5:472882..474003+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2490 ID=mRNA_2490|Name=jgi.p|Nanoce1779_2|330459|organism=Nannochloropsis oceanica|type=mRNA|length=1122bp|location=Sequence derived from alignment at scaffold_5:472882..474003+ (Nannochloropsis oceanica)
GATCGTACTTTACCAGCTTAGGTCCAAGCAATTTGGCCATTGGGTGCTCT
TTCTGTGCCGCTGTCAGCGTGCTTTCGTCCAGCTCCTGCACCGGCTCGAC
CTCGAAAACCTCTTCAGGCTCATCTACTTCCTCCTGCTCCCCGCTGGCAC
TACCTGCGGCCGTGGGCGGTGGCGGTGCTGTCGTCGTAGCTCCACGAGGA
GCCTTAGCATCGCTTTTGCCTCCCTTTATGCCGCTCTCGACAAAGGATGA
CGTGCTGCTGCTCCCTCCTGAGGTAGTGCTGCTACGGCCCGCCATGGACG
AGCGCCGCGAGGGAGCTGACTCATGCTGCAGCTGCTTGGCCTTGATTGCC
CGCCGAGCAAACGACACCCCTGCTCCACCTGCGGCCGCCACTCCCGCTCC
AACCAACGCCTTGAGAGCCAAGGCCGCCAGGCTGGGACCCTCCTCCTCCT
CTTCGTACTCGTACTCCTCCTCTCCCCATCCTGAGAAGCGATTGAAAAGA
GTAGCAGGGCTAAAACTAGGCCCCGACGCCTGCACGGCCCCCACAGCTGC
TCCGAGGAACAGGACCAAGCTGGTTGTCTTCATTTTTCTGCCATGTGATT
ATGTAGGGTGGAGTGTGAAATGCGGACGGGGAGTTGAGGGGTGGAACGCA
AAGTATCTCATCATGGCAACAGCAACTCCAAGTTGGTTGATCCACAAGCC
GTGTTGGGTCGCGGGGGAGGCAAGCATGAAGATGAGGGCAGATAAGCGGT
ATCCCCTAAATACATTTATAGACTTCCATCGTAACCTTTCTTTACTCTTT
TCTTTGAGCAGGGAGACCTGGTATATAATGAGGGACAGGGAATACGAGGC
ACGGCAAGGCTCTGCTTCATTCCTCGCCGCGAATTTCACTTTTTTGGCGC
GAGACACATTTTCCAACGCCTAGCAAACAAACGGGCTGGTGGAAAGAAGC
GAGGCTCCCTCCCCCACGAGCAAGAGCGTCGTCAAGTCGATATGGCCCTA
CGTTAGGATATTCATCCATAATGAAATATGCAAAGCACCTCCAATGGTGG
CTTTCCTCCGTTCTTGACGCCCTGGGTACCTTGCGTCGTGTTCGGCCCAT
GTTTCTTGTTTGTCTCTTGACA
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Coding sequence (CDS) from alignment at scaffold_5:472882..474003+

>mRNA_2490 ID=mRNA_2490|Name=jgi.p|Nanoce1779_2|330459|organism=Nannochloropsis oceanica|type=CDS|length=696bp|location=Sequence derived from alignment at scaffold_5:472882..474003+ (Nannochloropsis oceanica)
ATGCCGCTCTCGACAAAGGATGACGTGCTGCTGCTCCCTCCTGAGGTAGT
GCTGCTACGGCCCGCCATGGACGAGCGCCGCGAGGGAGCTGACTCATGCT
GCAGCTGCTTGGCCTTGATTGCCCGCCGAGCAAACGACACCCCTGCTCCA
CCTGCGGCCGCCACTCCCGCTCCAACCAACGCCTTGAGAGCCAAGGCCGC
CAGGCTGGGACCCTCCTCCTCCTCTTCGTACTCGTACTCCTCCTCTCCCC
ATCCTGAGAAGCGATTGAAAAGAGTAGCAGGGCTAAAACTAGGCCCCGAC
GCCTGCACGGCCCCCACAGCTGCTCCGAGGAACAGGACCAAGCTGGTTGT
CTTCATTTTTCTGCCATGTGATTATGTAGGGTGGAGTGTGAAATGCGGAC
GGGGAGTTGAGGGGTGGAACGCAAAGTATCTCATCATGGCAACAGCAACT
CCAAGTTGGTTGATCCACAAGCCGTGTTGGGTCGCGGGGGAGGCAAGCAT
GAAGATGAGGGCAGATAAGCGGTATCCCCTAAATACATTTATAGACTTCC
ATCGTAACCTTTCTTTACTCTTTTCTTTGAGCAGGGAGACCTGGTATATA
ATGAGGGACAGGGAATACGAGGCACGGCAAGGCTCTGCTTCATTCCTCGC
CGCGAATTTCACTTTTTTGGCGCGAGACACATTTTCCAACGCCTAG
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Synonyms
Publications