jgi.p|Nanoce1779_2|234116, mRNA_249 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|234116
Unique NamemRNA_249
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1438
Alignment locationscaffold_3:624111..625548 +

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Properties
Property NameValue
TranscriptId234202
TrackFilteredModels2
ProteinId234116
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_3supercontigscaffold_3:624111..625548 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|234116gene_249Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|234116mRNA_249-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_249CDS_249Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_249 ID=mRNA_249|Name=jgi.p|Nanoce1779_2|234116|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp
GGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGACGCACCGT
TCAAAGGTAGGGGAGAGAGGAAGGAGAGAGGGGGGTAGGAGTGATGTTGC
ATAGGTTGCAGGTTAATATTCCTTGGTAGCATCTTAATCATTTTTATTCC
GCGCAATGGAGATAGAGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTG
CGGCAAAGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCA
CGCCCAGCGTATTGTCGAATTTCCGGAATTGGATCGATTTTTGGACATAG
GGAATAAAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACC
ATCCTCTCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCA
GCAAGGCAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAG
AAGAGGGGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAG
CCTGCAGTTACAGCTGCTACTGCAACTGTTACTGCAATCGTCCCACCACC
TGCCACTCTTACTGCAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCA
CGGACCAGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGC
GATCTCGACACTACCACACAGAAGGTTTTGTGGGCACCCCCGCAAACATA
TCGTTCATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGG
GCAATCTTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGAC
AGATTGATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCAC
CAACGCAGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTT
CCACGGTGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAG
GGCGTCGACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTAC
CACCCCTCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGG
AGGGGAAGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAACATATGGT
CATCGTGTCATGGATAGACGAAGGCGGCGGGGATGCCCGGATGGAGGGGG
CAGGGGGATCTGTTGCGAGGAGTGCGGGTGAGGATGGAGAGGAGTTGAAG
TTGTTAGGCACTGACTGAATTAGTTTTAAGTTCTTAAAAAGCACACGATT
GAAGATGAAAGATTCCATACCAACAGCGTTATTCGAACATTTATAAGAAC
AGACTTGAAGAGATTGAGGAGGAGAGAGAAGATGCTGCCAAAGATTGTGT
GTGGTGGCATCGAGAAAAGCTCCTGCCCCCCAAGCAATGTAACAATACGA
CAAAGAACGAGTGAGATAAAATGCCATATTCTCTGGCG
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protein sequence of jgi.p|Nanoce1779_2|234116

>mRNA_249-protein ID=mRNA_249-protein|Name=jgi.p|Nanoce1779_2|234116|organism=Nannochloropsis oceanica|type=polypeptide|length=342bp
MEIEAKGWGKKNEDVRQSVVCHVQWCGLARDHAQRIVEFPELDRFLDIGN
KMSKACCPDEWVLGTILSLQLRGEEGRKMESQQGKKDENKDQEKKNSEEE
GEGKEEPYPEEGDRKPAVTAATATVTAIVPPPATLTATVPPGVTDWPVTD
QYRAKRQAQSPLVWSDLDTTTQKVLWAPPQTYRSFTLEKVVEQVSRNEGN
LFFRKVSPLTEKEIDRLIPYQEAKEVPDAAATNAGATPAVVVDKRGMAST
VGQGSSCTSATSDLEGVDDEARSSMNSSRVPTTPQTHLRLPEQEEEEEEG
KKVVTFRAGALPTYGHRVMDRRRRRGCPDGGGRGICCEECG*
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mRNA from alignment at scaffold_3:624111..625548+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_249 ID=mRNA_249|Name=jgi.p|Nanoce1779_2|234116|organism=Nannochloropsis oceanica|type=mRNA|length=1438bp|location=Sequence derived from alignment at scaffold_3:624111..625548+ (Nannochloropsis oceanica)
GGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGACGCACCGT
TCAAAGGTAGGGGAGAGAGGAAGGAGAGAGGGGGGTAGGAGTGATGTTGC
ATAGGTTGCAGGTTAATATTCCTTGGTAGCATCTTAATCATTTTTATTCC
GCGCAATGGAGATAGAGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTG
CGGCAAAGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCA
CGCCCAGCGTATTGTCGAATTTCCGGAATTGGATCGATTTTTGGACATAG
GGAATAAAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACC
ATCCTCTCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCA
GCAAGGCAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAG
AAGAGGGGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAG
CCTGCAGTTACAGCTGCTACTGCAACTGTTACTGCAATCGTCCCACCACC
TGCCACTCTTACTGCAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCA
CGGACCAGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGC
GATCTCGACACTACCACACAGAAGGTTTTGTGGGCACCCCCGCAAACATA
TCGTTCATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGG
GCAATCTTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGAC
AGATTGATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCAC
CAACGCAGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTT
CCACGGTGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAG
GGCGTCGACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTAC
CACCCCTCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGG
AGGGGAAGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAACATATGGT
CATCGTGTCATGGATAGACGAAGGCGGCGGGGATGCCCGGATGGAGGGGG
CAGGGGGATCTGTTGCGAGGAGTGCGGGTGAGGATGGAGAGGAGTTGAAG
TTGTTAGGCACTGACTGAATTAGTTTTAAGTTCTTAAAAAGCACACGATT
GAAGATGAAAGATTCCATACCAACAGCGTTATTCGAACATTTATAAGAAC
AGACTTGAAGAGATTGAGGAGGAGAGAGAAGATGCTGCCAAAGATTGTGT
GTGGTGGCATCGAGAAAAGCTCCTGCCCCCCAAGCAATGTAACAATACGA
CAAAGAACGAGTGAGATAAAATGCCATATTCTCTGGCG
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Coding sequence (CDS) from alignment at scaffold_3:624111..625548+

>mRNA_249 ID=mRNA_249|Name=jgi.p|Nanoce1779_2|234116|organism=Nannochloropsis oceanica|type=CDS|length=1026bp|location=Sequence derived from alignment at scaffold_3:624111..625548+ (Nannochloropsis oceanica)
ATGGAGATAGAGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTGCGGCA
AAGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCACGCCC
AGCGTATTGTCGAATTTCCGGAATTGGATCGATTTTTGGACATAGGGAAT
AAAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACCATCCT
CTCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCAGCAAG
GCAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAGAAGAG
GGGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAGCCTGC
AGTTACAGCTGCTACTGCAACTGTTACTGCAATCGTCCCACCACCTGCCA
CTCTTACTGCAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCACGGAC
CAGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGCGATCT
CGACACTACCACACAGAAGGTTTTGTGGGCACCCCCGCAAACATATCGTT
CATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGGGCAAT
CTTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGACAGATT
GATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCACCAACG
CAGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTTCCACG
GTGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAGGGCGT
CGACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTACCACCC
CTCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGGAGGGG
AAGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAACATATGGTCATCG
TGTCATGGATAGACGAAGGCGGCGGGGATGCCCGGATGGAGGGGGCAGGG
GGATCTGTTGCGAGGAGTGCGGGTGA
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Synonyms
Publications