jgi.p|Nanoce1779_2|580542, mRNA_2489 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580542
Unique Name	mRNA_2489
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2293
Alignment location	scaffold_5:471179..473471 -

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Properties


Property Name	Value
TranscriptId	580628
Track	FilteredModels2
ProteinId	580542

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:471179..473471 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580542	gene_2489	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580542	mRNA_2489-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2489	CDS_2489	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:471179..473471-
coding sequence from alignment at scaffold_5:471179..473471-

mRNA sequence

>mRNA_2489 ID=mRNA_2489|Name=jgi.p|Nanoce1779_2|580542|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp
CAGAAAAATGAAGACAACCAGCTTGGTCCTGTTCCTCGGAGCAGCTGTGG
GGGCCGTGCAGGCGTCGGGGCCTAGTTTTAGCCCTGCTACTCTTTTCAAT
CGCTTCTCAGGATGGGGAGAGGAGGAGTACGAGTACGAAGAGGAGGAGGA
GGGTCCCAGCCTGGCGGCCTTGGCTCTCAAGGCGTTGGTTGGAGCGGGAG
TGGCGGCCGCAGGTGGAGCAGGGGTGTCGTTTGCTCGGCGGGCAATCAAG
GCCAAGCAGCTGCAGCATGAGTCAGCTCCCTCGCGGCGCTCGTCCATGGC
GGGCCGTAGCAGCACTACCTCAGGAGGGAGCAGCAGCACGTCATCCTTTG
TCGAGAGCGGCATAAAGGGAGGCAAAAGCGATGCTAAGGCTCCTCGTGGA
GCTACGACGACAGCACCGCCACCGCCCACGGCCGCAGGTAGTGCCAGCGG
GGAGCAGGAGGAAGTAGATGAGCCTGAAGAGGTTTTCGAGGTCGAGCCGG
TGCAGGAGCTGGACGAAAGCACGCTGACAGCGGCACAGAAAGAGCACCCA
ATGGCCAAATTGCTTGGACCTAAGCTGGTAAAGTACGATCCGAAAGATCG
CAAGCTGGTGGAGGTGGCGACCGCGGACGTGTTGGACGGCAAGGTGACCT
CGCTTTTCTTCCACGCGCACCAGGTAAAGAGAGAGGGAGGGAAAGAAGGG
ATTGAGAATAGGCGAAAGACCCTGCGATTGTGATCTATAACATACACATA
CTTTGACAATCCAATTCCTGTCGACATCCTCTTCTCCTTTCTTCTCGTTC
TCACAAACATACCCACAAACAGGTAGAGCAAATGCTTGAGAAAATGAAGG
CCGGCAAGGTCCTCCCCGGCATCAAGGACGTCTACGCCGAGCAACAGGAA
AAGGGAAACAATTTCGAAGTCGTCTTTGTCCCGTTGCCTGATGGACAGGA
AGGGCGTTTTCAGGCATACCTGAAGGATATGCCGTGGTATGCCGTCCCGT
TTAACTCCACCGAAAAGCTACGTGATGCATATAAGACCTTCAAGATCCAG
AACTTGCCGGCTGCAGTGATTGTAGATGAACAAGCGGACGTGATTAACGA
GAAAGGATTCACCTACATGCTGATCGACAAGGATGGCTTCCCCTGGCGCC
CCAAGACGCTGACCCAAATGATGGGTAGCACCTTTATCACCAACACGGGG
AAAACAGTCCCCGCCACGGAGGTGGCCAAGAAGAAGGTCTTGGCCCTCTA
TTTCTCTGCGAACTGGTGCAAGCCCTGCCGTGAATTCACTCCCAAGCTGG
TCGAAGCTTATGAGCGATACCGTGCCGAAGGAAAAGACCTCGAAGTCGTT
TTTGTGTCCATGGACGAGACCGAGGAGAAATTCAACGAATACTTTGCGGA
GATGCCCTGGCTCTCTCTCCCCTACACTGACAAGACCACTCGCTCCCTCC
TTATGACCGAGTTGGAAGTCCGCGGCCTCCCCTCCCTGGTCTTACTCGAC
GAGACCCGTGAGGTGATTACCACCAAAGGCCGTGACTTTGTCCTCAAGGA
CCCCGAAGGTCGCAACTTCCCTTGGTACCCCCAGCCGTTGAACGAGATAT
CATACTCCTTCGATGGGATTGCCCAAAAACCTTCCATCGTTCTTTTCATG
GAAGGAGCGGGCACGGTCGATCAAACCAAGATGATTGCGTCGATGCAGGC
CGTGGCAGAAGAGTACACAGAGAAGAACAAGCTCGCGCCCGAGGAGGCTG
CTCACAGGTTCAATTTCTTCTATGCTCAAGAGATCTCAACATTCTCCAAG
GCGCTCCGTTCCATCGCCGGCCTGGAGCAACTCAACCCGAAGGACAAGTT
TTTGAAGGCAAAGGCCCAGGCGAACAAACCGAGGTTGGTGTTGTTGGATA
TCGCGAAGGAGGTCTGTCATGTGACCCCGGAAGAGGGAGCGGGGGATGTG
GACGAGGCGGCGATTCGGGCGATGCTTGAGGCACGGGTGGAAGGGACGCT
CCCGATGGAAAGTTTCCGTCAACCGGAGCCCGAGAGCGCTGATGCGGCAG
CTGCGGCTGCGGCGGCTGCGGCAGGAAAGGCATGAAGAGTAAGAGTGAGG
GAGGGGATGGGCAGTTAGACGGGAAGAGTGAAGAAGACACACAGGCATGT
GAGAGGTAAGCGACAGGCAGCAGCAAGCAAGACATCCAGAAGGACAGAAT
AATAACACGTCAATAAAAGTCAGAGAAACCATCAAGGGAAGCAGAAGTAA
AGGGAAAAAGCATCAACATTTTCCAAGAAAGGCCAAGCGTTCA

protein sequence of jgi.p|Nanoce1779_2|580542

>mRNA_2489-protein ID=mRNA_2489-protein|Name=jgi.p|Nanoce1779_2|580542|organism=Nannochloropsis oceanica|type=polypeptide|length=418bp
MLEKMKAGKVLPGIKDVYAEQQEKGNNFEVVFVPLPDGQEGRFQAYLKDM
PWYAVPFNSTEKLRDAYKTFKIQNLPAAVIVDEQADVINEKGFTYMLIDK
DGFPWRPKTLTQMMGSTFITNTGKTVPATEVAKKKVLALYFSANWCKPCR
EFTPKLVEAYERYRAEGKDLEVVFVSMDETEEKFNEYFAEMPWLSLPYTD
KTTRSLLMTELEVRGLPSLVLLDETREVITTKGRDFVLKDPEGRNFPWYP
QPLNEISYSFDGIAQKPSIVLFMEGAGTVDQTKMIASMQAVAEEYTEKNK
LAPEEAAHRFNFFYAQEISTFSKALRSIAGLEQLNPKDKFLKAKAQANKP
RLVLLDIAKEVCHVTPEEGAGDVDEAAIRAMLEARVEGTLPMESFRQPEP
ESADAAAAAAAAAAGKA*

mRNA from alignment at scaffold_5:471179..473471-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2489 ID=mRNA_2489|Name=jgi.p|Nanoce1779_2|580542|organism=Nannochloropsis oceanica|type=mRNA|length=2293bp|location=Sequence derived from alignment at scaffold_5:471179..473471- (Nannochloropsis oceanica)
CAGAAAAATGAAGACAACCAGCTTGGTCCTGTTCCTCGGAGCAGCTGTGG
GGGCCGTGCAGGCGTCGGGGCCTAGTTTTAGCCCTGCTACTCTTTTCAAT
CGCTTCTCAGGATGGGGAGAGGAGGAGTACGAGTACGAAGAGGAGGAGGA
GGGTCCCAGCCTGGCGGCCTTGGCTCTCAAGGCGTTGGTTGGAGCGGGAG
TGGCGGCCGCAGGTGGAGCAGGGGTGTCGTTTGCTCGGCGGGCAATCAAG
GCCAAGCAGCTGCAGCATGAGTCAGCTCCCTCGCGGCGCTCGTCCATGGC
GGGCCGTAGCAGCACTACCTCAGGAGGGAGCAGCAGCACGTCATCCTTTG
TCGAGAGCGGCATAAAGGGAGGCAAAAGCGATGCTAAGGCTCCTCGTGGA
GCTACGACGACAGCACCGCCACCGCCCACGGCCGCAGGTAGTGCCAGCGG
GGAGCAGGAGGAAGTAGATGAGCCTGAAGAGGTTTTCGAGGTCGAGCCGG
TGCAGGAGCTGGACGAAAGCACGCTGACAGCGGCACAGAAAGAGCACCCA
ATGGCCAAATTGCTTGGACCTAAGCTGGTAAAGTACGATCCGAAAGATCG
CAAGCTGGTGGAGGTGGCGACCGCGGACGTGTTGGACGGCAAGGTGACCT
CGCTTTTCTTCCACGCGCACCAGGTAAAGAGAGAGGGAGGGAAAGAAGGG
ATTGAGAATAGGCGAAAGACCCTGCGATTGTGATCTATAACATACACATA
CTTTGACAATCCAATTCCTGTCGACATCCTCTTCTCCTTTCTTCTCGTTC
TCACAAACATACCCACAAACAGGTAGAGCAAATGCTTGAGAAAATGAAGG
CCGGCAAGGTCCTCCCCGGCATCAAGGACGTCTACGCCGAGCAACAGGAA
AAGGGAAACAATTTCGAAGTCGTCTTTGTCCCGTTGCCTGATGGACAGGA
AGGGCGTTTTCAGGCATACCTGAAGGATATGCCGTGGTATGCCGTCCCGT
TTAACTCCACCGAAAAGCTACGTGATGCATATAAGACCTTCAAGATCCAG
AACTTGCCGGCTGCAGTGATTGTAGATGAACAAGCGGACGTGATTAACGA
GAAAGGATTCACCTACATGCTGATCGACAAGGATGGCTTCCCCTGGCGCC
CCAAGACGCTGACCCAAATGATGGGTAGCACCTTTATCACCAACACGGGG
AAAACAGTCCCCGCCACGGAGGTGGCCAAGAAGAAGGTCTTGGCCCTCTA
TTTCTCTGCGAACTGGTGCAAGCCCTGCCGTGAATTCACTCCCAAGCTGG
TCGAAGCTTATGAGCGATACCGTGCCGAAGGAAAAGACCTCGAAGTCGTT
TTTGTGTCCATGGACGAGACCGAGGAGAAATTCAACGAATACTTTGCGGA
GATGCCCTGGCTCTCTCTCCCCTACACTGACAAGACCACTCGCTCCCTCC
TTATGACCGAGTTGGAAGTCCGCGGCCTCCCCTCCCTGGTCTTACTCGAC
GAGACCCGTGAGGTGATTACCACCAAAGGCCGTGACTTTGTCCTCAAGGA
CCCCGAAGGTCGCAACTTCCCTTGGTACCCCCAGCCGTTGAACGAGATAT
CATACTCCTTCGATGGGATTGCCCAAAAACCTTCCATCGTTCTTTTCATG
GAAGGAGCGGGCACGGTCGATCAAACCAAGATGATTGCGTCGATGCAGGC
CGTGGCAGAAGAGTACACAGAGAAGAACAAGCTCGCGCCCGAGGAGGCTG
CTCACAGGTTCAATTTCTTCTATGCTCAAGAGATCTCAACATTCTCCAAG
GCGCTCCGTTCCATCGCCGGCCTGGAGCAACTCAACCCGAAGGACAAGTT
TTTGAAGGCAAAGGCCCAGGCGAACAAACCGAGGTTGGTGTTGTTGGATA
TCGCGAAGGAGGTCTGTCATGTGACCCCGGAAGAGGGAGCGGGGGATGTG
GACGAGGCGGCGATTCGGGCGATGCTTGAGGCACGGGTGGAAGGGACGCT
CCCGATGGAAAGTTTCCGTCAACCGGAGCCCGAGAGCGCTGATGCGGCAG
CTGCGGCTGCGGCGGCTGCGGCAGGAAAGGCATGAAGAGTAAGAGTGAGG
GAGGGGATGGGCAGTTAGACGGGAAGAGTGAAGAAGACACACAGGCATGT
GAGAGGTAAGCGACAGGCAGCAGCAAGCAAGACATCCAGAAGGACAGAAT
AATAACACGTCAATAAAAGTCAGAGAAACCATCAAGGGAAGCAGAAGTAA
AGGGAAAAAGCATCAACATTTTCCAAGAAAGGCCAAGCGTTCA

Coding sequence (CDS) from alignment at scaffold_5:471179..473471-

>mRNA_2489 ID=mRNA_2489|Name=jgi.p|Nanoce1779_2|580542|organism=Nannochloropsis oceanica|type=CDS|length=1254bp|location=Sequence derived from alignment at scaffold_5:471179..473471- (Nannochloropsis oceanica)
ATGCTTGAGAAAATGAAGGCCGGCAAGGTCCTCCCCGGCATCAAGGACGT
CTACGCCGAGCAACAGGAAAAGGGAAACAATTTCGAAGTCGTCTTTGTCC
CGTTGCCTGATGGACAGGAAGGGCGTTTTCAGGCATACCTGAAGGATATG
CCGTGGTATGCCGTCCCGTTTAACTCCACCGAAAAGCTACGTGATGCATA
TAAGACCTTCAAGATCCAGAACTTGCCGGCTGCAGTGATTGTAGATGAAC
AAGCGGACGTGATTAACGAGAAAGGATTCACCTACATGCTGATCGACAAG
GATGGCTTCCCCTGGCGCCCCAAGACGCTGACCCAAATGATGGGTAGCAC
CTTTATCACCAACACGGGGAAAACAGTCCCCGCCACGGAGGTGGCCAAGA
AGAAGGTCTTGGCCCTCTATTTCTCTGCGAACTGGTGCAAGCCCTGCCGT
GAATTCACTCCCAAGCTGGTCGAAGCTTATGAGCGATACCGTGCCGAAGG
AAAAGACCTCGAAGTCGTTTTTGTGTCCATGGACGAGACCGAGGAGAAAT
TCAACGAATACTTTGCGGAGATGCCCTGGCTCTCTCTCCCCTACACTGAC
AAGACCACTCGCTCCCTCCTTATGACCGAGTTGGAAGTCCGCGGCCTCCC
CTCCCTGGTCTTACTCGACGAGACCCGTGAGGTGATTACCACCAAAGGCC
GTGACTTTGTCCTCAAGGACCCCGAAGGTCGCAACTTCCCTTGGTACCCC
CAGCCGTTGAACGAGATATCATACTCCTTCGATGGGATTGCCCAAAAACC
TTCCATCGTTCTTTTCATGGAAGGAGCGGGCACGGTCGATCAAACCAAGA
TGATTGCGTCGATGCAGGCCGTGGCAGAAGAGTACACAGAGAAGAACAAG
CTCGCGCCCGAGGAGGCTGCTCACAGGTTCAATTTCTTCTATGCTCAAGA
GATCTCAACATTCTCCAAGGCGCTCCGTTCCATCGCCGGCCTGGAGCAAC
TCAACCCGAAGGACAAGTTTTTGAAGGCAAAGGCCCAGGCGAACAAACCG
AGGTTGGTGTTGTTGGATATCGCGAAGGAGGTCTGTCATGTGACCCCGGA
AGAGGGAGCGGGGGATGTGGACGAGGCGGCGATTCGGGCGATGCTTGAGG
CACGGGTGGAAGGGACGCTCCCGATGGAAAGTTTCCGTCAACCGGAGCCC
GAGAGCGCTGATGCGGCAGCTGCGGCTGCGGCGGCTGCGGCAGGAAAGGC
ATGA

Synonyms

Publications