jgi.p|Nanoce1779_2|580540, mRNA_2488 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580540
Unique NamemRNA_2488
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length812
Alignment locationscaffold_5:469918..471016 +

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Properties
Property NameValue
TranscriptId580626
TrackFilteredModels2
ProteinId580540
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:469918..471016 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580540gene_2488Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580540mRNA_2488-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2488CDS_2488Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2488 ID=mRNA_2488|Name=jgi.p|Nanoce1779_2|580540|organism=Nannochloropsis oceanica|type=mRNA|length=812bp
ACAGGTCTCCCTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGC
CACCATGATGCAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCC
TGGTGGCCGCCTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATG
CAGCGAGTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATGATGGC
TGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAAAGCCC
TGGCGGAGGCGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGTGGTGC
GGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGGCTGTA
CAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCCTGCGA
TTGCCTCTGCGCTCAAGGTGTATGGCCTTCCCACAATATTCTTCATCCGC
GAGGGACAGTTGGTCCATCGTATGGAGGGTGCTATGCCGGCGTCGGAGCT
GACCAAGATGGTGAATCATTATTGCTTTGGTGCACCTTTGGATGGTGCAA
CAGCGGCAGCGGATGAGGAAATCAAGGATGTTTGAGAAAGGAGGGGAAGA
GGGGAAAGGCCGAAAGAAGGTACCGAAAGATGCCATGCATGCACGGACGC
AAGTAAGCAAGAAATAGATTTATCGAGCAGAGAAGGAGGCAGAAGAGGAA
TGAGCAAAGGTCTGCGACGTTACAGCAGCAGCAGCAGCAGCAGTAGCAGC
AGCAGTTGCTGTTGTGGTGATGGAAGGATGCATGTTGTGTCGTTGTATAT
ATTGAAGGGAGG
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protein sequence of jgi.p|Nanoce1779_2|580540

>mRNA_2488-protein ID=mRNA_2488-protein|Name=jgi.p|Nanoce1779_2|580540|organism=Nannochloropsis oceanica|type=polypeptide|length=177bp
MMQLKNKQALGVCLLLVAALAQAFMPATLSGMQRVHRHSRPRGGPVMMAG
DSGVLKVTGEELEKALAEAGSPVLLDVYAQWCGPCQILAGELDKVKGLYK
DKLRVLKVDSDEEPAIASALKVYGLPTIFFIREGQLVHRMEGAMPASELT
KMVNHYCFGAPLDGATAAADEEIKDV*
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mRNA from alignment at scaffold_5:469918..471016+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2488 ID=mRNA_2488|Name=jgi.p|Nanoce1779_2|580540|organism=Nannochloropsis oceanica|type=mRNA|length=1099bp|location=Sequence derived from alignment at scaffold_5:469918..471016+ (Nannochloropsis oceanica)
ACAGGTCTCCCTCCTTCGACTTCTCCCAATCAGCACTGAAAGTCGCTTGC
CACCATGATGCAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCC
TGGTGGCCGCCTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATG
CAGCGAGGTATGTGGAGCGGTGATGTGCAGACGGAGCGAACGGGATATCG
GTAGAGATGGAATGCGAGGCAGAGAGAGCACTGCATTTGATTCAGAGAGA
GCACAGCATTTGATTCTACCTACCCACCCTTCGCTCTTACTCATTTCCAC
ATTCCTACATCCCAAAACACAGTGCATCGTCATAGCCGTCCTCGAGGCGG
GCCTGTGATGATGGCTGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAG
AACTCGAGAAAGCCCTGGCGGAGGCGGGCAGCCCCGTCCTCCTCGACGTC
TACGCGCAGTGGTGCGGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAA
GGTCAAGGGGCTGTACAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGG
ATGAGGAGCCTGCGATTGCCTCTGCGCTCAAGGTGTATGGGTAAGAAAGG
ATAAGGATATCCTCTCACTTACCCTTCCTTCCTTGTTTCCTCCTTCCTCT
CCTCCTCACCTAATTTATCCTCCCTAACCTCCATACCCCTTTTTCCCGTT
TCCATCCAAAAGCCTTCCCACAATATTCTTCATCCGCGAGGGACAGTTGG
TCCATCGTATGGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATGGTG
AATCATTATTGCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGCGGA
TGAGGAAATCAAGGATGTTTGAGAAAGGAGGGGAAGAGGGGAAAGGCCGA
AAGAAGGTACCGAAAGATGCCATGCATGCACGGACGCAAGTAAGCAAGAA
ATAGATTTATCGAGCAGAGAAGGAGGCAGAAGAGGAATGAGCAAAGGTCT
GCGACGTTACAGCAGCAGCAGCAGCAGCAGTAGCAGCAGCAGTTGCTGTT
GTGGTGATGGAAGGATGCATGTTGTGTCGTTGTATATATTGAAGGGAGG
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Coding sequence (CDS) from alignment at scaffold_5:469918..471016+

>mRNA_2488 ID=mRNA_2488|Name=jgi.p|Nanoce1779_2|580540|organism=Nannochloropsis oceanica|type=CDS|length=1593bp|location=Sequence derived from alignment at scaffold_5:469918..471016+ (Nannochloropsis oceanica)
ATGATGCAGCTGAAGAACAAGCAAGCACTCGGGGTATGCCTCCTCCTGGT
GGCCGCCTTGGCCCAGGCCTTCATGCCCGCCACACTATCGGGAATGCAGC
GAGTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTGATGATGGCTGGG
GACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGAGAAAGCCCTGGC
GGAGGCGGGCAGCCCCGTCCTCCTCGACGTCTACGCGCAGTGGTGCGGTC
CTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAGGGGCTGTACAAG
GACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGAGCCTGCGATTGC
CTCTGCGCTCAAGGTGTATGGCCTTCCCACAATATTCTTCATCCGCGAGG
GACAGTTGGTCCATCGTATGGAGGGTGCTATGCCGGCGTCGGAGCTGACC
AAGATGGTGAATCATTATTGCTTTGGTGCACCTTTGGATGGTGCAACAGC
GGCAGCGGATGAGGAAATCAAGGATGTTTGAATGATGCAGCTGAAGAACA
AGCAAGCACTCGGGGTATGCCTCCTCCTGGTGGCCGCCTTGGCCCAGGCC
TTCATGCCCGCCACACTATCGGGAATGCAGCGAGTGCATCGTCATAGCCG
TCCTCGAGGCGGGCCTGTGATGATGGCTGGGGACAGCGGCGTGCTCAAGG
TAACAGGGGAAGAACTCGAGAAAGCCCTGGCGGAGGCGGGCAGCCCCGTC
CTCCTCGACGTCTACGCGCAGTGGTGCGGTCCTTGCCAAATCCTTGCTGG
CGAGTTGGATAAGGTCAAGGGGCTGTACAAGGACAAGCTGCGAGTATTAA
AGGTGGACTCGGATGAGGAGCCTGCGATTGCCTCTGCGCTCAAGGTGTAT
GGCCTTCCCACAATATTCTTCATCCGCGAGGGACAGTTGGTCCATCGTAT
GGAGGGTGCTATGCCGGCGTCGGAGCTGACCAAGATGGTGAATCATTATT
GCTTTGGTGCACCTTTGGATGGTGCAACAGCGGCAGCGGATGAGGAAATC
AAGGATGTTTGAATGATGCAGCTGAAGAACAAGCAAGCACTCGGGGTATG
CCTCCTCCTGGTGGCCGCCTTGGCCCAGGCCTTCATGCCCGCCACACTAT
CGGGAATGCAGCGAGTGCATCGTCATAGCCGTCCTCGAGGCGGGCCTGTG
ATGATGGCTGGGGACAGCGGCGTGCTCAAGGTAACAGGGGAAGAACTCGA
GAAAGCCCTGGCGGAGGCGGGCAGCCCCGTCCTCCTCGACGTCTACGCGC
AGTGGTGCGGTCCTTGCCAAATCCTTGCTGGCGAGTTGGATAAGGTCAAG
GGGCTGTACAAGGACAAGCTGCGAGTATTAAAGGTGGACTCGGATGAGGA
GCCTGCGATTGCCTCTGCGCTCAAGGTGTATGGCCTTCCCACAATATTCT
TCATCCGCGAGGGACAGTTGGTCCATCGTATGGAGGGTGCTATGCCGGCG
TCGGAGCTGACCAAGATGGTGAATCATTATTGCTTTGGTGCACCTTTGGA
TGGTGCAACAGCGGCAGCGGATGAGGAAATCAAGGATGTTTGA
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Synonyms
Publications