jgi.p|Nanoce1779_2|525072, mRNA_2484 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525072
Unique NamemRNA_2484
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1248
Alignment locationscaffold_5:458539..459988 -

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Properties
Property NameValue
TranscriptId525158
TrackFilteredModels2
ProteinId525072
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:458539..459988 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525072gene_2484Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525072mRNA_2484-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2484CDS_2484Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2484 ID=mRNA_2484|Name=jgi.p|Nanoce1779_2|525072|organism=Nannochloropsis oceanica|type=mRNA|length=1248bp
ATGGTGGGGACGAGCAACAAAACGACAATCACTCCCCGACGTGCTTTGAG
GCGCTTAGGTGGTGAGGATTGCTCTCATCCCAGCATAGGGGGGAGATCCA
GTACTGCAGGGCCCCTCCTTCGGCAACGGCTTAAGGTCGATCGAATCGAC
TTGCACTTTCGTAACCTTACCGTAGCGCTCCCTGGAGGACGACGAAAAGT
TCTCAATGGCGTTACTGGTGGGTTTCGGTCGGGAAGGGTTACTGCCGTGA
TGGGGCCGTCGGGCTGTGGGAAGACAACGTTGATATCCGCGTTGTCGAAT
CGCTTGGGCTTGGGGACCCGAGTGACGGGGAGTACGTTTATAAATGGCTC
TCCGGAAAGTAGCACGGCCTTGCACGATGTGATGGGGTTCGTTCCTCAGG
ATGATATAATGTATGAAGACTTGACAGTTAAGGAGAATTTACTGTACTGC
TGTCAATTGAGGGCGGACCCGTCCATGAGCAGGGCGGAGCAGATGCGGCA
TGTTGATAGGGTCATTGATTCTTTGGGATTGTTTCCGAGTCGGCATTCCA
TGATTGGCTCGACGGAGGACAGGGGGATATCTGGAGGGCAACGGAAAAGG
GTGAATGTGGCAATGGAGTTGACGAGTAAGCCATTGCTGCTGTTTTTGGA
TGAGCCTACCAGTGGATTGGACTCCACCACCTCTGCCGAGCTTATGCAGT
ACCTACACCGACTTACCGCCACGGGGCTGACCATCGCCGCTGTAATTCAC
CAACCCCGAATCGAGGTGTTTCTCGGGGTCGACGATGTCATCTTTCTAGG
AAGGGGAGGAAGAGTTGCTTATTATGGGTCAGCGAGGGATGCAGTGCAGT
ATTTTACAGAGAGAGGATTCCCGTTTGAGCCAAATGTGAACCCCGCGGAT
CGGATCTTGGACGTCATCACCAAGGCAGATGATAGTTTGTATGAAGCATG
GTCAATGCAGGAACAGCAGCAGCTGGAGCAGCAGCAGCAGCAGGATTCAT
TTGGATATTGGGCGCCAAAAGAGGAGGAGAGTTATAATGATGGTGACGGT
GGGGGGGGAGGGCAAGAAGGGGGCCGGACGAGCAGTGCAGGGAGTAATAG
CGCCTGTAGCAGCATTTACCGTTCGGGGGGTATTTACCTGCCCCACCAGC
AGCAACAGGAGAAGAAAGAGCAGCGACGGGTGGTCTCAATTGAGGGTCGA
CGGACTCCTATGATGATGCCGATGGGAGGAATGCCTTTAGGTGCGTGA
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protein sequence of jgi.p|Nanoce1779_2|525072

>mRNA_2484-protein ID=mRNA_2484-protein|Name=jgi.p|Nanoce1779_2|525072|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MVGTSNKTTITPRRALRRLGGEDCSHPSIGGRSSTAGPLLRQRLKVDRID
LHFRNLTVALPGGRRKVLNGVTGGFRSGRVTAVMGPSGCGKTTLISALSN
RLGLGTRVTGSTFINGSPESSTALHDVMGFVPQDDIMYEDLTVKENLLYC
CQLRADPSMSRAEQMRHVDRVIDSLGLFPSRHSMIGSTEDRGISGGQRKR
VNVAMELTSKPLLLFLDEPTSGLDSTTSAELMQYLHRLTATGLTIAAVIH
QPRIEVFLGVDDVIFLGRGGRVAYYGSARDAVQYFTERGFPFEPNVNPAD
RILDVITKADDSLYEAWSMQEQQQLEQQQQQDSFGYWAPKEEESYNDGDG
GGGGQEGGRTSSAGSNSACSSIYRSGGIYLPHQQQQEKKEQRRVVSIEGR
RTPMMMPMGGMPLGA*
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mRNA from alignment at scaffold_5:458539..459988-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2484 ID=mRNA_2484|Name=jgi.p|Nanoce1779_2|525072|organism=Nannochloropsis oceanica|type=mRNA|length=1450bp|location=Sequence derived from alignment at scaffold_5:458539..459988- (Nannochloropsis oceanica)
ATGGTGGGGACGAGCAACAAAACGACAATCACTCCCCGACGTGCTTTGAG
GCGCTTAGGTGGTGAGGATTGCTCTCATCCCAGCATAGGGGGGAGATCCA
GTACTGCAGGGCCCCTCCTTCGGCAACGGCTTAAGGTCGATCGAATCGAC
TTGCACTTTCGTAACCTTACCGTAGCGCTCCCTGGAGGACGACGAAAAGT
TCTCAATGGCGTTACTGGTGGGTTTCGGTCGGGAAGGGTTACTGCCGTGA
TGGGGCCGTCGGGCTGTGGGAAGACAACGTTGATATCCGCGTTGTCGAAT
CGCTTGGGCTTGGGGACCCGAGTGACGGGGAGTACGTTTATAAATGGCTC
TCCGGAAAGTAGCACGGCCTTGCACGATGTGATGGGGTTCGTTCCTCAGG
ATGATATAATGTATGAAGACTTGACAGTTAAGGAGAATTTACTGTACTGC
TGTCAATTGAGGGCGGACCCGTCCATGAGCAGGGCGGAGCAGATGCGGCA
TGTTGATAGGGTCATTGATTCTTTGGGATTGTTTCCGAGTCGGCATTCCA
TGATTGGCTCGACGGAGGACAGGGGGATATCTGGAGGGCAACGGAAAAGG
GTGAATGTGGCAATGGAGTTGACGAGTAAGCCATTGCTGCTGTTTTTGGA
TGAGCCTACCAGTGGATTGGTGAGTATTTATTTGTAAAGTGTACCATATC
ATCGCTCCATTATATTAAAGGAAAGGTTTGTAACCATATTTGGGGTTCGG
ATGATTCATTTGCTCCTCATCCTCCCTCCTTCCCTCCCTCCTTCCCTCCC
TTCTTCCTCCCTCTTTTTTTGAAATCATTCATTTTACCTCCCTATCGTCT
CCCTCTCTTTCCCTCTGGTAGGACTCCACCACCTCTGCCGAGCTTATGCA
GTACCTACACCGACTTACCGCCACGGGGCTGACCATCGCCGCTGTAATTC
ACCAACCCCGAATCGAGGTGTTTCTCGGGGTCGACGATGTCATCTTTCTA
GGAAGGGGAGGAAGAGTTGCTTATTATGGGTCAGCGAGGGATGCAGTGCA
GTATTTTACAGAGAGAGGATTCCCGTTTGAGCCAAATGTGAACCCCGCGG
ATCGGATCTTGGACGTCATCACCAAGGCAGATGATAGTTTGTATGAAGCA
TGGTCAATGCAGGAACAGCAGCAGCTGGAGCAGCAGCAGCAGCAGGATTC
ATTTGGATATTGGGCGCCAAAAGAGGAGGAGAGTTATAATGATGGTGACG
GTGGGGGGGGAGGGCAAGAAGGGGGCCGGACGAGCAGTGCAGGGAGTAAT
AGCGCCTGTAGCAGCATTTACCGTTCGGGGGGTATTTACCTGCCCCACCA
GCAGCAACAGGAGAAGAAAGAGCAGCGACGGGTGGTCTCAATTGAGGGTC
GACGGACTCCTATGATGATGCCGATGGGAGGAATGCCTTTAGGTGCGTGA
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Coding sequence (CDS) from alignment at scaffold_5:458539..459988-

>mRNA_2484 ID=mRNA_2484|Name=jgi.p|Nanoce1779_2|525072|organism=Nannochloropsis oceanica|type=CDS|length=2496bp|location=Sequence derived from alignment at scaffold_5:458539..459988- (Nannochloropsis oceanica)
GACTCCACCACCTCTGCCGAGCTTATGCAGTACCTACACCGACTTACCGC
CACGGGGCTGACCATCGCCGCTGTAATTCACCAACCCCGAATCGAGGTGT
TTCTCGGGGTCGACGATGTCATCTTTCTAGGAAGGGGAGGAAGAGTTGCT
TATTATGGGTCAGCGAGGGATGCAGTGCAGTATTTTACAGAGAGAGGATT
CCCGTTTGAGCCAAATGTGAACCCCGCGGATCGGATCTTGGACGTCATCA
CCAAGGCAGATGATAGTTTGTATGAAGCATGGTCAATGCAGGAACAGCAG
CAGCTGGAGCAGCAGCAGCAGCAGGATTCATTTGGATATTGGGCGCCAAA
AGAGGAGGAGAGTTATAATGATGGTGACGGTGGGGGGGGAGGGCAAGAAG
GGGGCCGGACGAGCAGTGCAGGGAGTAATAGCGCCTGTAGCAGCATTTAC
CGTTCGGGGGGTATTTACCTGCCCCACCAGCAGCAACAGGAGAAGAAAGA
GCAGCGACGGGTGGTCTCAATTGAGGGTCGACGGACTCCTATGATGATGC
CGATGGGAGGAATGCCTTTAGGTGCGTGAATGGTGGGGACGAGCAACAAA
ACGACAATCACTCCCCGACGTGCTTTGAGGCGCTTAGGTGGTGAGGATTG
CTCTCATCCCAGCATAGGGGGGAGATCCAGTACTGCAGGGCCCCTCCTTC
GGCAACGGCTTAAGGTCGATCGAATCGACTTGCACTTTCGTAACCTTACC
GTAGCGCTCCCTGGAGGACGACGAAAAGTTCTCAATGGCGTTACTGGTGG
GTTTCGGTCGGGAAGGGTTACTGCCGTGATGGGGCCGTCGGGCTGTGGGA
AGACAACGTTGATATCCGCGTTGTCGAATCGCTTGGGCTTGGGGACCCGA
GTGACGGGGAGTACGTTTATAAATGGCTCTCCGGAAAGTAGCACGGCCTT
GCACGATGTGATGGGGTTCGTTCCTCAGGATGATATAATGTATGAAGACT
TGACAGTTAAGGAGAATTTACTGTACTGCTGTCAATTGAGGGCGGACCCG
TCCATGAGCAGGGCGGAGCAGATGCGGCATGTTGATAGGGTCATTGATTC
TTTGGGATTGTTTCCGAGTCGGCATTCCATGATTGGCTCGACGGAGGACA
GGGGGATATCTGGAGGGCAACGGAAAAGGGTGAATGTGGCAATGGAGTTG
ACGAGTAAGCCATTGCTGCTGTTTTTGGATGAGCCTACCAGTGGATTGGA
CTCCACCACCTCTGCCGAGCTTATGCAGTACCTACACCGACTTACCGCCA
CGGGGCTGACCATCGCCGCTGTAATTCACCAACCCCGAATCGAGGTGTTT
CTCGGGGTCGACGATGTCATCTTTCTAGGAAGGGGAGGAAGAGTTGCTTA
TTATGGGTCAGCGAGGGATGCAGTGCAGTATTTTACAGAGAGAGGATTCC
CGTTTGAGCCAAATGTGAACCCCGCGGATCGGATCTTGGACGTCATCACC
AAGGCAGATGATAGTTTGTATGAAGCATGGTCAATGCAGGAACAGCAGCA
GCTGGAGCAGCAGCAGCAGCAGGATTCATTTGGATATTGGGCGCCAAAAG
AGGAGGAGAGTTATAATGATGGTGACGGTGGGGGGGGAGGGCAAGAAGGG
GGCCGGACGAGCAGTGCAGGGAGTAATAGCGCCTGTAGCAGCATTTACCG
TTCGGGGGGTATTTACCTGCCCCACCAGCAGCAACAGGAGAAGAAAGAGC
AGCGACGGGTGGTCTCAATTGAGGGTCGACGGACTCCTATGATGATGCCG
ATGGGAGGAATGCCTTTAGGTGCGTGAATGGTGGGGACGAGCAACAAAAC
GACAATCACTCCCCGACGTGCTTTGAGGCGCTTAGGTGGTGAGGATTGCT
CTCATCCCAGCATAGGGGGGAGATCCAGTACTGCAGGGCCCCTCCTTCGG
CAACGGCTTAAGGTCGATCGAATCGACTTGCACTTTCGTAACCTTACCGT
AGCGCTCCCTGGAGGACGACGAAAAGTTCTCAATGGCGTTACTGGTGGGT
TTCGGTCGGGAAGGGTTACTGCCGTGATGGGGCCGTCGGGCTGTGGGAAG
ACAACGTTGATATCCGCGTTGTCGAATCGCTTGGGCTTGGGGACCCGAGT
GACGGGGAGTACGTTTATAAATGGCTCTCCGGAAAGTAGCACGGCCTTGC
ACGATGTGATGGGGTTCGTTCCTCAGGATGATATAATGTATGAAGACTTG
ACAGTTAAGGAGAATTTACTGTACTGCTGTCAATTGAGGGCGGACCCGTC
CATGAGCAGGGCGGAGCAGATGCGGCATGTTGATAGGGTCATTGATTCTT
TGGGATTGTTTCCGAGTCGGCATTCCATGATTGGCTCGACGGAGGACAGG
GGGATATCTGGAGGGCAACGGAAAAGGGTGAATGTGGCAATGGAGTTGAC
GAGTAAGCCATTGCTGCTGTTTTTGGATGAGCCTACCAGTGGATTG
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Synonyms
Publications