jgi.p|Nanoce1779_2|669080, mRNA_2482 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|669080
Unique NamemRNA_2482
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length951
Alignment locationscaffold_5:451055..452282 -

Link to JBrowse

Properties
Property NameValue
TranscriptId669166
TrackFilteredModels2
ProteinId669080
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:451055..452282 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669080gene_2482Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|669080mRNA_2482-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2482CDS_2482Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2482 ID=mRNA_2482|Name=jgi.p|Nanoce1779_2|669080|organism=Nannochloropsis oceanica|type=mRNA|length=951bp
ATGTCTCGATGGGGACGCAAAGCACGCCCGCCCCCTGGCTTTGACTACCT
GGAACCGACCCTGGCAGCCTTGGAAGCCGAGCTGCGAGAGAAGGTGAATG
AGGGCCACGAGGGGAAGCGCAAAAACGAGTCCCTGTGGCCGGTTCACCAG
ATCAACTGGCAACGGAGCCGCTACATCTTTGACATGTTTTATCGCTACAA
GAAGATCAGCCGTGAGGTCTATGAGTATTGCGTGCAGATGAAAATCGTCG
ACGCCGCCCTAGCTGCCAAATGGAAGAAGCCCGGCTACGAAAAGCTCTGC
TGCACATACGCCATCAACACGAAGAACTTTAAATTTGGTACCACCAGCAT
CTGCCGCGTGCCAAAGCATGTCTTGAACGAGGGAACGGTTGTGGAAGACA
CGAACTGTGGGTGTCGCGGCTGCTCGTCCGGAGAGCAGGGAGAAAAAAAT
ATTTTTGGGAACAAGTATGGGCAGTACTTGGCGGGCATTCAGGTACGGAG
GGAGAGAAAGCAGGCGAAATTGGAAGCAGCAGAGGCTGCATCAGCTAAGG
CGGAAGCAGGTGTGTGGGCGGAGCGGGGGGGTGGAGAGGACGATGAGGAG
GAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGACGACGACGACGAGGG
AGAAGAGGGGGGGGGCGGAGGAAGGAAAGGGAAGGCCAAGAGGTCAGGGC
AGGAGGATACGGATAATGATGATTTCGAGGAGGACGAGGACGAGGAGGGG
CGGGAACATAAAAAGAGCAAAGCGTTGTGAAGTAGCAAAGAAGATAAAGC
GGACGAGTGATAAGTCAAGTGTGCAAAGGTAACGACGAGGCGTAACATTT
TTTTAGAAAACTTCAGCGATAGAAAAAGACAGGGCAACCCTGAGTGTAAG
ATGAGAGCCAGGGCGAGGAGTATAAATTTTATTCTGTGGATTGTTCTTTC
G
back to top

protein sequence of jgi.p|Nanoce1779_2|669080

>mRNA_2482-protein ID=mRNA_2482-protein|Name=jgi.p|Nanoce1779_2|669080|organism=Nannochloropsis oceanica|type=polypeptide|length=260bp
MSRWGRKARPPPGFDYLEPTLAALEAELREKVNEGHEGKRKNESLWPVHQ
INWQRSRYIFDMFYRYKKISREVYEYCVQMKIVDAALAAKWKKPGYEKLC
CTYAINTKNFKFGTTSICRVPKHVLNEGTVVEDTNCGCRGCSSGEQGEKN
IFGNKYGQYLAGIQVRRERKQAKLEAAEAASAKAEAGVWAERGGGEDDEE
EEEEEEEEEEVDDDDEGEEGGGGGRKGKAKRSGQEDTDNDDFEEDEDEEG
REHKKSKAL*
back to top

mRNA from alignment at scaffold_5:451055..452282-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2482 ID=mRNA_2482|Name=jgi.p|Nanoce1779_2|669080|organism=Nannochloropsis oceanica|type=mRNA|length=1228bp|location=Sequence derived from alignment at scaffold_5:451055..452282- (Nannochloropsis oceanica)
ATGTCTCGATGGGGACGCAAAGCACGCCCGCCCCCTGGCTTTGACTACCT
GGAACCGACCCTGGCAGCCTTGGAAGCCGAGCTGCGAGAGAGTACGTAGT
TTATGTGGAAGTGCGTGTCCCTTACCTTCGGCGGGTTTGTGTTCTTACGC
TTCTCTTCCCACCTTCTCTCTTTCCCTCGTCACAACGTAGAGGTGAATGA
GGGCCACGAGGGGAAGCGCAAAAACGAGTCCCTGTGGCCGGTTCACCAGA
TCAACTGGCAACGGAGCCGCTACATCTTTGACATGTTTTATCGCTACAAG
AAGATCAGCCGTGAGGTCTATGAGTATTGCGTGCAGATGGTACGGTGCGG
GGCATAGGAGATTTGGGTTTCCGTGGGCTTGTATGACCATGGGTGGATGA
GTGGGGTACGAGGATACGCGGGACAGATTGGTTGTATGTGGGTAAGCTAT
CCAAAGCGATGGTGTCTCATTCTTGCGACCTCCTTCCTCCCTCCTATCCT
TCAATATCCCCACGTAGAAAATCGTCGACGCCGCCCTAGCTGCCAAATGG
AAGAAGCCCGGCTACGAAAAGCTCTGCTGCACATACGCCATCAACACGAA
GAACTTTAAATTTGGTACCACCAGCATCTGCCGCGTGCCAAAGCATGTCT
TGAACGAGGGAACGGTTGTGGAAGACACGAACTGTGGGTGTCGCGGCTGC
TCGTCCGGAGAGCAGGGAGAAAAAAATATTTTTGGGAACAAGTATGGGCA
GTACTTGGCGGGCATTCAGGTACGGAGGGAGAGAAAGCAGGCGAAATTGG
AAGCAGCAGAGGCTGCATCAGCTAAGGCGGAAGCAGGTGTGTGGGCGGAG
CGGGGGGGTGGAGAGGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGTTGACGACGACGACGAGGGAGAAGAGGGGGGGGGCGGAGGAA
GGAAAGGGAAGGCCAAGAGGTCAGGGCAGGAGGATACGGATAATGATGAT
TTCGAGGAGGACGAGGACGAGGAGGGGCGGGAACATAAAAAGAGCAAAGC
GTTGTGAAGTAGCAAAGAAGATAAAGCGGACGAGTGATAAGTCAAGTGTG
CAAAGGTAACGACGAGGCGTAACATTTTTTTAGAAAACTTCAGCGATAGA
AAAAGACAGGGCAACCCTGAGTGTAAGATGAGAGCCAGGGCGAGGAGTAT
AAATTTTATTCTGTGGATTGTTCTTTCG
back to top

Coding sequence (CDS) from alignment at scaffold_5:451055..452282-

>mRNA_2482 ID=mRNA_2482|Name=jgi.p|Nanoce1779_2|669080|organism=Nannochloropsis oceanica|type=CDS|length=2340bp|location=Sequence derived from alignment at scaffold_5:451055..452282- (Nannochloropsis oceanica)
AAAATCGTCGACGCCGCCCTAGCTGCCAAATGGAAGAAGCCCGGCTACGA
AAAGCTCTGCTGCACATACGCCATCAACACGAAGAACTTTAAATTTGGTA
CCACCAGCATCTGCCGCGTGCCAAAGCATGTCTTGAACGAGGGAACGGTT
GTGGAAGACACGAACTGTGGGTGTCGCGGCTGCTCGTCCGGAGAGCAGGG
AGAAAAAAATATTTTTGGGAACAAGTATGGGCAGTACTTGGCGGGCATTC
AGGTACGGAGGGAGAGAAAGCAGGCGAAATTGGAAGCAGCAGAGGCTGCA
TCAGCTAAGGCGGAAGCAGGTGTGTGGGCGGAGCGGGGGGGTGGAGAGGA
CGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGTTGACGACG
ACGACGAGGGAGAAGAGGGGGGGGGCGGAGGAAGGAAAGGGAAGGCCAAG
AGGTCAGGGCAGGAGGATACGGATAATGATGATTTCGAGGAGGACGAGGA
CGAGGAGGGGCGGGAACATAAAAAGAGCAAAGCGTTGTGAAGGTGAATGA
GGGCCACGAGGGGAAGCGCAAAAACGAGTCCCTGTGGCCGGTTCACCAGA
TCAACTGGCAACGGAGCCGCTACATCTTTGACATGTTTTATCGCTACAAG
AAGATCAGCCGTGAGGTCTATGAGTATTGCGTGCAGATGATGTCTCGATG
GGGACGCAAAGCACGCCCGCCCCCTGGCTTTGACTACCTGGAACCGACCC
TGGCAGCCTTGGAAGCCGAGCTGCGAGAGAAAAATCGTCGACGCCGCCCT
AGCTGCCAAATGGAAGAAGCCCGGCTACGAAAAGCTCTGCTGCACATACG
CCATCAACACGAAGAACTTTAAATTTGGTACCACCAGCATCTGCCGCGTG
CCAAAGCATGTCTTGAACGAGGGAACGGTTGTGGAAGACACGAACTGTGG
GTGTCGCGGCTGCTCGTCCGGAGAGCAGGGAGAAAAAAATATTTTTGGGA
ACAAGTATGGGCAGTACTTGGCGGGCATTCAGGTACGGAGGGAGAGAAAG
CAGGCGAAATTGGAAGCAGCAGAGGCTGCATCAGCTAAGGCGGAAGCAGG
TGTGTGGGCGGAGCGGGGGGGTGGAGAGGACGATGAGGAGGAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGTTGACGACGACGACGAGGGAGAAGAGGGG
GGGGGCGGAGGAAGGAAAGGGAAGGCCAAGAGGTCAGGGCAGGAGGATAC
GGATAATGATGATTTCGAGGAGGACGAGGACGAGGAGGGGCGGGAACATA
AAAAGAGCAAAGCGTTGTGAAGGTGAATGAGGGCCACGAGGGGAAGCGCA
AAAACGAGTCCCTGTGGCCGGTTCACCAGATCAACTGGCAACGGAGCCGC
TACATCTTTGACATGTTTTATCGCTACAAGAAGATCAGCCGTGAGGTCTA
TGAGTATTGCGTGCAGATGATGTCTCGATGGGGACGCAAAGCACGCCCGC
CCCCTGGCTTTGACTACCTGGAACCGACCCTGGCAGCCTTGGAAGCCGAG
CTGCGAGAGAAAAATCGTCGACGCCGCCCTAGCTGCCAAATGGAAGAAGC
CCGGCTACGAAAAGCTCTGCTGCACATACGCCATCAACACGAAGAACTTT
AAATTTGGTACCACCAGCATCTGCCGCGTGCCAAAGCATGTCTTGAACGA
GGGAACGGTTGTGGAAGACACGAACTGTGGGTGTCGCGGCTGCTCGTCCG
GAGAGCAGGGAGAAAAAAATATTTTTGGGAACAAGTATGGGCAGTACTTG
GCGGGCATTCAGGTACGGAGGGAGAGAAAGCAGGCGAAATTGGAAGCAGC
AGAGGCTGCATCAGCTAAGGCGGAAGCAGGTGTGTGGGCGGAGCGGGGGG
GTGGAGAGGACGATGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAG
GTTGACGACGACGACGAGGGAGAAGAGGGGGGGGGCGGAGGAAGGAAAGG
GAAGGCCAAGAGGTCAGGGCAGGAGGATACGGATAATGATGATTTCGAGG
AGGACGAGGACGAGGAGGGGCGGGAACATAAAAAGAGCAAAGCGTTGTGA
AGGTGAATGAGGGCCACGAGGGGAAGCGCAAAAACGAGTCCCTGTGGCCG
GTTCACCAGATCAACTGGCAACGGAGCCGCTACATCTTTGACATGTTTTA
TCGCTACAAGAAGATCAGCCGTGAGGTCTATGAGTATTGCGTGCAGATGA
TGTCTCGATGGGGACGCAAAGCACGCCCGCCCCCTGGCTTTGACTACCTG
GAACCGACCCTGGCAGCCTTGGAAGCCGAGCTGCGAGAGA
back to top
Synonyms
Publications