jgi.p|Nanoce1779_2|576699, mRNA_248 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576699
Unique Name	mRNA_248
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1801
Alignment location	scaffold_3:623303..625225 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576785
Track	FilteredModels2
ProteinId	576699

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:623303..625225 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576699	gene_248	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576699	mRNA_248-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_248	CDS_248	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:623303..625225+
coding sequence from alignment at scaffold_3:623303..625225+

mRNA sequence

>mRNA_248 ID=mRNA_248|Name=jgi.p|Nanoce1779_2|576699|organism=Nannochloropsis oceanica|type=mRNA|length=1801bp
ACAGGCGGCTGGCGGGCCTGGCGCCGCATCAACAGCATGAGCAGCGCCAG
CCTTGCCGCTGCTGTGGACGTGGCCATCCCCAGTACCAATTATTATGCCA
GCAGCACCAGCCCCACCTCCCCTCCTCGCATGAAGACGAACGACCAGCAA
GCTCTCTCTACGACGCCCAGTCGCCGCCAACGTCAACAGCAGAGTACTGG
TCTCACAAGGCCGATCAAGATGAGCGGCCGCCAATCGCTCCAGCAGAAGG
GTGCGAAAACGGAAGGAAAATACACAATGGGCAAAGAGTCAGACGCCCTG
TTCGGAGAGGCAGAGGTGAACACTTCCCGGTGCGTGGGCATCCTCTTTCT
GGCGCACGATGGGGTTGCCAATCCCTCACTCTGGGAGAAGTGGCGAGAAA
GCGATCCGGCGTTCGCATCCCGCATCAGATTTTTCGTTTTCCGGAACGAA
GCCATCAGCCACACCAGCACCTTTGCCAACCAAAACGACTTACTTTTGCG
CATGCGGACCAAGTGGTGCTGTTCCAGTATAGTCCGCGCGACTGTCAAGT
CCTTGGACGCCATATTGACAAAGGACGCAGACGTTGAAATTATTTACATC
GTTTCGGGTTTTGACATTCCGATTCAACCACCTTCGGCTTTCTTTACGAC
TCGGGCTGTGGTTACGGAGGGTGTGCCGAAAAGTGTGGTGCCGTTTCAGA
CCGTTTTGGCTTTTACGCCTGGGGAGGACGCACCGTTCAAAGGTAGGGGA
GAGAGGAAGGAGAGAGGGGGGTAGGAGTGATGTTGCATAGGTTGCAGGTT
AATATTCCTTGGTAGCATCTTAATCATTTTTATTCCGCGCAATGGAGATA
GAGGCCAAAGGTTGGGGCAAGAAGAACGAGGACGTGCGGCAAAGCGTCGT
GTGCCACGTGCAGTGGTGCGGGCTCGCGCGAGATCACGCCCAGCGTATTG
TCGAATTTCCGGAATTGGATCGATTTTTGGACATAGGGAATAAAATGTCG
AAAGCATGCTGTCCGGATGAGTGGGTGCTGGGCACCATCCTCTCTTTGCA
ACTGCGAGGGGAGGAGGGGCGAAAGATGGAAAGTCAGCAAGGCAAGAAGG
ATGAGAACAAGGACCAGGAGAAGAAGAATTCGGAAGAAGAGGGGGAGGGG
AAGGAGGAACCTTATCCGGAGGAAGGTGACCGCAAGCCTGCAGTTACAGC
TGCTACTGCAACTGTTACTGCAATCGTCCCACCACCTGCCACTCTTACTG
CAACCGTCCCACCCGGTGTAACTGACTGGCCTGTCACGGACCAGTACCGA
GCCAAGCGGCAGGCGCAGTCCCCCCTTGTCTGGAGCGATCTCGACACTAC
CACACAGAAGGTTTTGTGGGCACCCCCGCAAACATATCGTTCATTTACTC
TCGAGAAAGTGGTGGAGCAGGTGTCGCGAAACGAGGGCAATCTTTTCTTT
CGCAAGGTAAGCCCGTTGACGGAAAAGGAGATCGACAGATTGATCCCTTA
TCAGGAGGCCAAGGAAGTCCCCGATGCTGCCGCCACCAACGCAGGTGCAA
CACCAGCGGTGGTGGTAGATAAGAGGGGAATGGCTTCCACGGTGGGACAG
GGCTCGAGCTGTACCTCAGCTACCTCGGATTTAGAGGGCGTCGACGACGA
AGCCCGCAGCAGCATGAACAGCAGCCGTGTGCCTACCACCCCTCAGACGC
ATCTAAGGCTTCCCGAGCAGGAGGAGGAGGAAGAGGAGGGGAAGAAGGTA
GTGACTTTTCGTGCTGGGGCACTGCCAACATATGGTCATCGTGTCATGGA
T

protein sequence of jgi.p|Nanoce1779_2|576699

>mRNA_248-protein ID=mRNA_248-protein|Name=jgi.p|Nanoce1779_2|576699|organism=Nannochloropsis oceanica|type=polypeptide|length=246bp
MSSASLAAAVDVAIPSTNYYASSTSPTSPPRMKTNDQQALSTTPSRRQRQ
QQSTGLTRPIKMSGRQSLQQKGAKTEGKYTMGKESDALFGEAEVNTSRCV
GILFLAHDGVANPSLWEKWRESDPAFASRIRFFVFRNEAISHTSTFANQN
DLLLRMRTKWCCSSIVRATVKSLDAILTKDADVEIIYIVSGFDIPIQPPS
AFFTTRAVVTEGVPKSVVPFQTVLAFTPGEDAPFKGRGERKERGG*

mRNA from alignment at scaffold_3:623303..625225+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_248 ID=mRNA_248|Name=jgi.p|Nanoce1779_2|576699|organism=Nannochloropsis oceanica|type=mRNA|length=1923bp|location=Sequence derived from alignment at scaffold_3:623303..625225+ (Nannochloropsis oceanica)
ACAGGCGGCTGGCGGGCCTGGCGCCGCATCAACAGCATGAGCAGCGCCAG
CCTTGCCGCTGCTGTGGACGTGGCCATCCCCAGTACCAATTATTATGCCA
GCAGCACCAGCCCCACCTCCCCTCCTCGCATGAAGACGAACGACCAGCAA
GCTCTCTCTACGACGCCCAGTCGCCGCCAACGTCAACAGCAGAGTACTGG
TCTCACAAGGCCGATCAAGATGAGCGGCCGCCAATCGCTCCAGCAGAAGG
GTGCGAAAACGGAAGGAAAATACACAATGGGCAAAGAGTCAGACGCCCTG
TTCGGAGAGGCAGAGGTGAACACTTCCCGGTGCGTGGGCATCCTCTTTCT
GGCGCACGATGGGGTTGCCAATCCCTCACTCTGGGAGAAGTGGCGAGAAA
GCGATCCGGTGAGTAGAGCGCCGGGGAAGGAGTGGGAGGGGAGGCTGGCT
TTTCAGGCCCTCTCACATGCTGCACGGTGCAAGCCATCTCACCATCTCAC
CTGCGTCCCATCTCTTCCCATTATTTTCAGGCGTTCGCATCCCGCATCAG
ATTTTTCGTTTTCCGGAACGAAGCCATCAGCCACACCAGCACCTTTGCCA
ACCAAAACGACTTACTTTTGCGCATGCGGACCAAGTGGTGCTGTTCCAGT
ATAGTCCGCGCGACTGTCAAGTCCTTGGACGCCATATTGACAAAGGACGC
AGACGTTGAAATTATTTACATCGTTTCGGGTTTTGACATTCCGATTCAAC
CACCTTCGGCTTTCTTTACGACTCGGGCTGTGGTTACGGAGGGTGTGCCG
AAAAGTGTGGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGA
CGCACCGTTCAAAGGTAGGGGAGAGAGGAAGGAGAGAGGGGGGTAGGAGT
GATGTTGCATAGGTTGCAGGTTAATATTCCTTGGTAGCATCTTAATCATT
TTTATTCCGCGCAATGGAGATAGAGGCCAAAGGTTGGGGCAAGAAGAACG
AGGACGTGCGGCAAAGCGTCGTGTGCCACGTGCAGTGGTGCGGGCTCGCG
CGAGATCACGCCCAGCGTATTGTCGAATTTCCGGAATTGGATCGATTTTT
GGACATAGGGAATAAAATGTCGAAAGCATGCTGTCCGGATGAGTGGGTGC
TGGGCACCATCCTCTCTTTGCAACTGCGAGGGGAGGAGGGGCGAAAGATG
GAAAGTCAGCAAGGCAAGAAGGATGAGAACAAGGACCAGGAGAAGAAGAA
TTCGGAAGAAGAGGGGGAGGGGAAGGAGGAACCTTATCCGGAGGAAGGTG
ACCGCAAGCCTGCAGTTACAGCTGCTACTGCAACTGTTACTGCAATCGTC
CCACCACCTGCCACTCTTACTGCAACCGTCCCACCCGGTGTAACTGACTG
GCCTGTCACGGACCAGTACCGAGCCAAGCGGCAGGCGCAGTCCCCCCTTG
TCTGGAGCGATCTCGACACTACCACACAGAAGGTTTTGTGGGCACCCCCG
CAAACATATCGTTCATTTACTCTCGAGAAAGTGGTGGAGCAGGTGTCGCG
AAACGAGGGCAATCTTTTCTTTCGCAAGGTAAGCCCGTTGACGGAAAAGG
AGATCGACAGATTGATCCCTTATCAGGAGGCCAAGGAAGTCCCCGATGCT
GCCGCCACCAACGCAGGTGCAACACCAGCGGTGGTGGTAGATAAGAGGGG
AATGGCTTCCACGGTGGGACAGGGCTCGAGCTGTACCTCAGCTACCTCGG
ATTTAGAGGGCGTCGACGACGAAGCCCGCAGCAGCATGAACAGCAGCCGT
GTGCCTACCACCCCTCAGACGCATCTAAGGCTTCCCGAGCAGGAGGAGGA
GGAAGAGGAGGGGAAGAAGGTAGTGACTTTTCGTGCTGGGGCACTGCCAA
CATATGGTCATCGTGTCATGGAT

Coding sequence (CDS) from alignment at scaffold_3:623303..625225+

>mRNA_248 ID=mRNA_248|Name=jgi.p|Nanoce1779_2|576699|organism=Nannochloropsis oceanica|type=CDS|length=1476bp|location=Sequence derived from alignment at scaffold_3:623303..625225+ (Nannochloropsis oceanica)
ATGAGCAGCGCCAGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAGTAC
CAATTATTATGCCAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGAAGA
CGAACGACCAGCAAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGTCAA
CAGCAGAGTACTGGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCAATC
GCTCCAGCAGAAGGGTGCGAAAACGGAAGGAAAATACACAATGGGCAAAG
AGTCAGACGCCCTGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGCGTG
GGCATCCTCTTTCTGGCGCACGATGGGGTTGCCAATCCCTCACTCTGGGA
GAAGTGGCGAGAAAGCGATCCGGCGTTCGCATCCCGCATCAGATTTTTCG
TTTTCCGGAACGAAGCCATCAGCCACACCAGCACCTTTGCCAACCAAAAC
GACTTACTTTTGCGCATGCGGACCAAGTGGTGCTGTTCCAGTATAGTCCG
CGCGACTGTCAAGTCCTTGGACGCCATATTGACAAAGGACGCAGACGTTG
AAATTATTTACATCGTTTCGGGTTTTGACATTCCGATTCAACCACCTTCG
GCTTTCTTTACGACTCGGGCTGTGGTTACGGAGGGTGTGCCGAAAAGTGT
GGTGCCGTTTCAGACCGTTTTGGCTTTTACGCCTGGGGAGGACGCACCGT
TCAAAGGTAGGGGAGAGAGGAAGGAGAGAGGGGGGTAGATGAGCAGCGCC
AGCCTTGCCGCTGCTGTGGACGTGGCCATCCCCAGTACCAATTATTATGC
CAGCAGCACCAGCCCCACCTCCCCTCCTCGCATGAAGACGAACGACCAGC
AAGCTCTCTCTACGACGCCCAGTCGCCGCCAACGTCAACAGCAGAGTACT
GGTCTCACAAGGCCGATCAAGATGAGCGGCCGCCAATCGCTCCAGCAGAA
GGGTGCGAAAACGGAAGGAAAATACACAATGGGCAAAGAGTCAGACGCCC
TGTTCGGAGAGGCAGAGGTGAACACTTCCCGGTGCGTGGGCATCCTCTTT
CTGGCGCACGATGGGGTTGCCAATCCCTCACTCTGGGAGAAGTGGCGAGA
AAGCGATCCGGCGTTCGCATCCCGCATCAGATTTTTCGTTTTCCGGAACG
AAGCCATCAGCCACACCAGCACCTTTGCCAACCAAAACGACTTACTTTTG
CGCATGCGGACCAAGTGGTGCTGTTCCAGTATAGTCCGCGCGACTGTCAA
GTCCTTGGACGCCATATTGACAAAGGACGCAGACGTTGAAATTATTTACA
TCGTTTCGGGTTTTGACATTCCGATTCAACCACCTTCGGCTTTCTTTACG
ACTCGGGCTGTGGTTACGGAGGGTGTGCCGAAAAGTGTGGTGCCGTTTCA
GACCGTTTTGGCTTTTACGCCTGGGGAGGACGCACCGTTCAAAGGTAGGG
GAGAGAGGAAGGAGAGAGGGGGGTAG

Synonyms

Publications