jgi.p|Nanoce1779_2|580509, mRNA_2479 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580509
Unique NamemRNA_2479
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1103
Alignment locationscaffold_5:444922..446024 +

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Properties
Property NameValue
TranscriptId580595
TrackFilteredModels2
ProteinId580509
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:444922..446024 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580509gene_2479Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580509mRNA_2479-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2479CDS_2479Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2479 ID=mRNA_2479|Name=jgi.p|Nanoce1779_2|580509|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp
CTTCTGCCTCCTCCGCTAGTCGAGTACGTATTTGAATAGTGTTTATTGGA
AGGTCCCCATGGCTTCCTGGATTTTTTGAACGGAAACGAAAGAGCCGGGC
TTGCCGTAGCTTTCCTATTCCTTGCCTCGTCGCGGCTTTAAATCGAGCCT
TAATCACGCATCACCACCTCTCCCCACATTCAAATAACTTTCCCATTCCT
CACCTCTGTACACTTCCTCCTCCACACTATCAGATCACCGAAGCCATGCC
CATCCGGGACGCCCTCACTGCTGTTATCCAAAACGCCAAGGAAGGGAAAC
AAAGGAAGTTCGCAGAGACAGTAGACCTAGCCATTCAATTAGGTGTCGAC
CCCCGGAAACCCAATCAGAGCGTGCGAGGCGTGCAGATCTTGCCCAATGG
GACGGGTAAAGCCGTCAGGGTAGCAGTGTTTGCGCGAGGAGATGATGTAG
AGGCCGCCAAGGCAGCTGGTGCTGCCATCGTGGGGGCAGAGGAGCTGGTT
AAAGCCATCCAAGACGGGGACTTGGCATTCGACCGCTGCATTGCCACGCC
AGAAGTCATGCCCTTGGTCAGTCGCGTCGCGCGGATGTTGGGCCCGAGGG
GTTTGATGCCCAATCCCAAGATGGGTACGGTGACGAAGGATGTGGCCACG
GCTGTGAAGTCGGCGATGGCGGGGCAGGTTCAGTTTAAGGCGGATCGGTT
CGGGATGGTGCATGTGGGGGTGGGCAAGGTGTCGTTTGACACGGCGGCAT
TGCTGGAGAATATACGGGTGTTGATGGTGGCATTGAATAATGCTAAGCCT
GAGGGGGCAAAGGGGAAGTATTTGAAGGGCGTGCATCTCACGAGTACAAT
GGGCAAGGCAGTGCCGGTGGAGGTGGCGACGGTGGACCCCAGGAGTTCAA
GGTTCATGTTTGAGGCGACGCCCTCGATATAATACAACAGCCGAGCAGCA
CAGATATTTCATAGAAGAAAAAGACGGAGAAGCTGACGAAGTAATGAAAA
GCGCAGATCATTGTGTTTTCTTACGAATCACAGAAGGCAAAATGACATTT
CATCGGCTTCCTTTCTTTCTGTCTGTCTCCTCTTTCTTATCATCCTCATT
GGC
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protein sequence of jgi.p|Nanoce1779_2|580509

>mRNA_2479-protein ID=mRNA_2479-protein|Name=jgi.p|Nanoce1779_2|580509|organism=Nannochloropsis oceanica|type=polypeptide|length=229bp
MPIRDALTAVIQNAKEGKQRKFAETVDLAIQLGVDPRKPNQSVRGVQILP
NGTGKAVRVAVFARGDDVEAAKAAGAAIVGAEELVKAIQDGDLAFDRCIA
TPEVMPLVSRVARMLGPRGLMPNPKMGTVTKDVATAVKSAMAGQVQFKAD
RFGMVHVGVGKVSFDTAALLENIRVLMVALNNAKPEGAKGKYLKGVHLTS
TMGKAVPVEVATVDPRSSRFMFEATPSI*
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mRNA from alignment at scaffold_5:444922..446024+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2479 ID=mRNA_2479|Name=jgi.p|Nanoce1779_2|580509|organism=Nannochloropsis oceanica|type=mRNA|length=1103bp|location=Sequence derived from alignment at scaffold_5:444922..446024+ (Nannochloropsis oceanica)
CTTCTGCCTCCTCCGCTAGTCGAGTACGTATTTGAATAGTGTTTATTGGA
AGGTCCCCATGGCTTCCTGGATTTTTTGAACGGAAACGAAAGAGCCGGGC
TTGCCGTAGCTTTCCTATTCCTTGCCTCGTCGCGGCTTTAAATCGAGCCT
TAATCACGCATCACCACCTCTCCCCACATTCAAATAACTTTCCCATTCCT
CACCTCTGTACACTTCCTCCTCCACACTATCAGATCACCGAAGCCATGCC
CATCCGGGACGCCCTCACTGCTGTTATCCAAAACGCCAAGGAAGGGAAAC
AAAGGAAGTTCGCAGAGACAGTAGACCTAGCCATTCAATTAGGTGTCGAC
CCCCGGAAACCCAATCAGAGCGTGCGAGGCGTGCAGATCTTGCCCAATGG
GACGGGTAAAGCCGTCAGGGTAGCAGTGTTTGCGCGAGGAGATGATGTAG
AGGCCGCCAAGGCAGCTGGTGCTGCCATCGTGGGGGCAGAGGAGCTGGTT
AAAGCCATCCAAGACGGGGACTTGGCATTCGACCGCTGCATTGCCACGCC
AGAAGTCATGCCCTTGGTCAGTCGCGTCGCGCGGATGTTGGGCCCGAGGG
GTTTGATGCCCAATCCCAAGATGGGTACGGTGACGAAGGATGTGGCCACG
GCTGTGAAGTCGGCGATGGCGGGGCAGGTTCAGTTTAAGGCGGATCGGTT
CGGGATGGTGCATGTGGGGGTGGGCAAGGTGTCGTTTGACACGGCGGCAT
TGCTGGAGAATATACGGGTGTTGATGGTGGCATTGAATAATGCTAAGCCT
GAGGGGGCAAAGGGGAAGTATTTGAAGGGCGTGCATCTCACGAGTACAAT
GGGCAAGGCAGTGCCGGTGGAGGTGGCGACGGTGGACCCCAGGAGTTCAA
GGTTCATGTTTGAGGCGACGCCCTCGATATAATACAACAGCCGAGCAGCA
CAGATATTTCATAGAAGAAAAAGACGGAGAAGCTGACGAAGTAATGAAAA
GCGCAGATCATTGTGTTTTCTTACGAATCACAGAAGGCAAAATGACATTT
CATCGGCTTCCTTTCTTTCTGTCTGTCTCCTCTTTCTTATCATCCTCATT
GGC
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Coding sequence (CDS) from alignment at scaffold_5:444922..446024+

>mRNA_2479 ID=mRNA_2479|Name=jgi.p|Nanoce1779_2|580509|organism=Nannochloropsis oceanica|type=CDS|length=687bp|location=Sequence derived from alignment at scaffold_5:444922..446024+ (Nannochloropsis oceanica)
ATGCCCATCCGGGACGCCCTCACTGCTGTTATCCAAAACGCCAAGGAAGG
GAAACAAAGGAAGTTCGCAGAGACAGTAGACCTAGCCATTCAATTAGGTG
TCGACCCCCGGAAACCCAATCAGAGCGTGCGAGGCGTGCAGATCTTGCCC
AATGGGACGGGTAAAGCCGTCAGGGTAGCAGTGTTTGCGCGAGGAGATGA
TGTAGAGGCCGCCAAGGCAGCTGGTGCTGCCATCGTGGGGGCAGAGGAGC
TGGTTAAAGCCATCCAAGACGGGGACTTGGCATTCGACCGCTGCATTGCC
ACGCCAGAAGTCATGCCCTTGGTCAGTCGCGTCGCGCGGATGTTGGGCCC
GAGGGGTTTGATGCCCAATCCCAAGATGGGTACGGTGACGAAGGATGTGG
CCACGGCTGTGAAGTCGGCGATGGCGGGGCAGGTTCAGTTTAAGGCGGAT
CGGTTCGGGATGGTGCATGTGGGGGTGGGCAAGGTGTCGTTTGACACGGC
GGCATTGCTGGAGAATATACGGGTGTTGATGGTGGCATTGAATAATGCTA
AGCCTGAGGGGGCAAAGGGGAAGTATTTGAAGGGCGTGCATCTCACGAGT
ACAATGGGCAAGGCAGTGCCGGTGGAGGTGGCGACGGTGGACCCCAGGAG
TTCAAGGTTCATGTTTGAGGCGACGCCCTCGATATAA
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Synonyms
Publications