Properties
| Property Name | Value |
|---|
| TranscriptId | 330344 |
| Track | FilteredModels2 |
| ProteinId | 330258 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:441646..444313 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2478 ID=mRNA_2478|Name=jgi.p|Nanoce1779_2|330258|organism=Nannochloropsis oceanica|type=mRNA|length=2364bp
CACCATCCACTCCTTCCTCTTCACGTGCTTGCTGCTGCTACTTTGTGTCG
GTGGCCATTCCGCGTTCCTCCTAGCATCGCCTCGTCAAGAAATACCAGTT
TTAAAAACAACGAACATGGCGCACGTGATCACCGCCGTCGAAGGGACCCA
AGCCGACCACTGGAAAGTCAAGCGTGCTCTCCTCTCCGTCTCCGATAAAA
CCGGTCTCTTGGAGCTGGCCACCTTCCTGGTCGGACAAGGCGTCGAGCTC
CTCTCCACCGGGGGAACAGCCAAGGCCATCCGTGACGCGGGTCTACCGGT
CAAGGACGTTACTGACTACACGGGTTCTCCCGAGATTCTGGACGGACGTG
TCAAGACTCTTCACCCCAAGGTGCACGGTGGTCTGCTCGGCGTCCGGGGC
AATCCAACGCACGAAACGCAAATGAAGGAGAACGGCATTGAGAACATTGA
TGTCGTCGTCCTCAATTTGTATGCGTTCGAACACACCGTGCAAAAAGGTG
GGGATTTCGCGACGTGCATTGAAAACATCGACATCGGTGGTCCTTCTATG
CTTCGCTCGTCTGCCAAGAACCACAACTATGTCGTTATCACCACGTCCCC
CTCCCAATACGGAGAGTTGATAGCGGAAATGAAGGCCAACGACGGGAGCA
CCTCCCTTGCCCTCCGCAAGCGTTTTGCCGCTCGTGCATTTGCCACCTCA
GCTGCCTACGATTCTGCCATTGCTGGTTGGATTAATGGACAGCTCGGGGA
GCAAGCCCCCGTGGTTACCCGTGTGTACACCCCGGAATTTCCCCTGAAAT
ACGGCTGCAACCCCCACCAGGCTCCTGCTGGTATCTTGTCCATTTTGGGC
ACGTCTATGCCGTTCAAGGTCTTGAATGGCACTCCTGGTTATATTAATTT
GTTGGACGCCCTTAATGCCTACCAGCTCGTGCGTGAGCTCCGCGCTGCTT
TGGGCTTGGCGGCTGCTGCTTCCTTTAAACACGTCTCTCCGGCGGGGACG
GGGGTGGCTGTGCCCTTGACAGCGGAAGAAGCGGAGGCGTACGAGGTTGC
CGATCCATCAATTTTAACCCCTGTTGCCTTGGCTTATATCAGGGCGAGGG
GCGCAGATCCCATGTGTTCGTTCGGGGATTTTGCGGCGGTTAGTGATGTG
GTGGATGTTGACACTGCGAAGGTGCTTCAGAAGGAGGTCAGTGACGGGAT
CATTGCTCCAGGGTATGACCCAGAGGCACTGAAGATTTTGGCCAGCAAGA
AAGGCGGGAAGTTCATTGTGTTGCTGGCGACGGTGGATTTCATCCCCCCG
CCTGTGGAGTACAGGGAGGTTTATGGCGCTGCCTTTAAGCAGAGGAGAAA
CGATGCTTTGTTGAGCCCGGCGGACTTGACGAATGTGGTGACGACAAAGC
AATTGGGGGAGGAAGCAGTGCGTGATTTAATTATAGCGTCGATTGCGATT
AAGTACACTCAGAGTAACTCGGTGGGATACGCGCTGAACGGGCAAGTGAT
AGGGGTTGGGGCCGGGCAGCAAAGCCGGGTAGATTGTGTGAAGCTGGCGG
GGAGGAAGGTGGAAGTGTGGTGGCTCCGACAGCACCCGAAGGTGCGTGCC
CTGGTTTTCAAGCCGACCGTGAAGAGGCAGGATCGGGTGAATGCCCGAGT
GAGGTACATCGAGGGTGACATCACGGCGGCGGAGCGTCCGCTGTGGGAGG
CGAATTTTGATGAGATTCCCTCGCCCTTGACGGAGGAGGAGAAGACGGCA
TTCATGGCCACATTACAAGGCGTGAGTCTCTCATCGGATGCGTTCTTCCC
ATTCCGGGACTCGATTGATCACGCGTCGAAGTACGGGGTGACGTCTGTGA
TGCAACCTGGTGGTTCTGTCCAAGATGAGCAGGTGACCGAGTGCTGCAAC
GGGTACGGCATGGCGATGGTATTCACCAATATTCGCCTCTTCCATCATTA
GAGCGTTTTGAAGGGGGTTCTGGGAAGAGGGAAAATTGTGAGCAGTAAGC
GAGAGAGGGAGGAATGTGGGATGAATGGTAGCGTGGGAGAGCAGTATATT
CTTTTTCCCACACAAAGTTTTGTCGGATGGCGGGGGGTTTATACGGTGGA
TATATCCAGGGATTATGTTTGTTACTTTTGAACCAGGTTTTCACGTACTT
CTTTTAAATGTCGTTTCACCCCGAACATCATCTTTCAAAGAAGAATAGAA
AAAAAAGTTGCCTATACTTCTTACGACACTTAGAAACGTGAGTGATTGAT
TATGAGATTTAAAGTGCGATGAAATGGATGCAAGGCGCTGCAAATATTTC
TTCTAGACTAAGAAAAAAACTAAGTATATGGTAAACACAGGTTTAATACT
ATCACACAGGCTTG back to topprotein sequence of jgi.p|Nanoce1779_2|330258 >mRNA_2478-protein ID=mRNA_2478-protein|Name=jgi.p|Nanoce1779_2|330258|organism=Nannochloropsis oceanica|type=polypeptide|length=612bp
MAHVITAVEGTQADHWKVKRALLSVSDKTGLLELATFLVGQGVELLSTGG
TAKAIRDAGLPVKDVTDYTGSPEILDGRVKTLHPKVHGGLLGVRGNPTHE
TQMKENGIENIDVVVLNLYAFEHTVQKGGDFATCIENIDIGGPSMLRSSA
KNHNYVVITTSPSQYGELIAEMKANDGSTSLALRKRFAARAFATSAAYDS
AIAGWINGQLGEQAPVVTRVYTPEFPLKYGCNPHQAPAGILSILGTSMPF
KVLNGTPGYINLLDALNAYQLVRELRAALGLAAAASFKHVSPAGTGVAVP
LTAEEAEAYEVADPSILTPVALAYIRARGADPMCSFGDFAAVSDVVDVDT
AKVLQKEVSDGIIAPGYDPEALKILASKKGGKFIVLLATVDFIPPPVEYR
EVYGAAFKQRRNDALLSPADLTNVVTTKQLGEEAVRDLIIASIAIKYTQS
NSVGYALNGQVIGVGAGQQSRVDCVKLAGRKVEVWWLRQHPKVRALVFKP
TVKRQDRVNARVRYIEGDITAAERPLWEANFDEIPSPLTEEEKTAFMATL
QGVSLSSDAFFPFRDSIDHASKYGVTSVMQPGGSVQDEQVTECCNGYGMA
MVFTNIRLFHH* back to topmRNA from alignment at scaffold_5:441646..444313+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2478 ID=mRNA_2478|Name=jgi.p|Nanoce1779_2|330258|organism=Nannochloropsis oceanica|type=mRNA|length=2668bp|location=Sequence derived from alignment at scaffold_5:441646..444313+ (Nannochloropsis oceanica)
CACCATCCACTCCTTCCTCTTCACGTGCTTGCTGCTGCTACTTTGTGTCG
GTGGCCATTCCGCGTTCCTCCTAGCATCGCCTCGTCAAGAAATACCAGTT
TTAAAAACAACGAACATGGCGCACGTGGTAAGTGCTGAAATAGCTTAGAT
GGGTTGCGTGTGCAATGCTTTCATATATTCGTTCCCCGCTTTTGTCAATT
CAATCGTCGTTGTCTTCGTAACCCCCGCCTGCACCCCACTGCCTGCCCTT
AAGCTCGTGGTTTTACTCTTCGGTGTCAATGTCCGACTGGCTTCAGCCTT
TGTCTTTGTCTCATTCCCGTAGTGCCATGACCTTTTTTCCATCCAATCAT
AGGCTTGACCCATCGATGACCTCCACCACTAACGTCTCACGCTCCCGAAC
CCTCCATCCACCCCTGCCTTCCCTCCCTCAGATCACCGCCGTCGAAGGGA
CCCAAGCCGACCACTGGAAAGTCAAGCGTGCTCTCCTCTCCGTCTCCGAT
AAAACCGGTCTCTTGGAGCTGGCCACCTTCCTGGTCGGACAAGGCGTCGA
GCTCCTCTCCACCGGGGGAACAGCCAAGGCCATCCGTGACGCGGGTCTAC
CGGTCAAGGACGTTACTGACTACACGGGTTCTCCCGAGATTCTGGACGGA
CGTGTCAAGACTCTTCACCCCAAGGTGCACGGTGGTCTGCTCGGCGTCCG
GGGCAATCCAACGCACGAAACGCAAATGAAGGAGAACGGCATTGAGAACA
TTGATGTCGTCGTCCTCAATTTGTATGCGTTCGAACACACCGTGCAAAAA
GGTGGGGATTTCGCGACGTGCATTGAAAACATCGACATCGGTGGTCCTTC
TATGCTTCGCTCGTCTGCCAAGAACCACAACTATGTCGTTATCACCACGT
CCCCCTCCCAATACGGAGAGTTGATAGCGGAAATGAAGGCCAACGACGGG
AGCACCTCCCTTGCCCTCCGCAAGCGTTTTGCCGCTCGTGCATTTGCCAC
CTCAGCTGCCTACGATTCTGCCATTGCTGGTTGGATTAATGGACAGCTCG
GGGAGCAAGCCCCCGTGGTTACCCGTGTGTACACCCCGGAATTTCCCCTG
AAATACGGCTGCAACCCCCACCAGGCTCCTGCTGGTATCTTGTCCATTTT
GGGCACGTCTATGCCGTTCAAGGTCTTGAATGGCACTCCTGGTTATATTA
ATTTGTTGGACGCCCTTAATGCCTACCAGCTCGTGCGTGAGCTCCGCGCT
GCTTTGGGCTTGGCGGCTGCTGCTTCCTTTAAACACGTCTCTCCGGCGGG
GACGGGGGTGGCTGTGCCCTTGACAGCGGAAGAAGCGGAGGCGTACGAGG
TTGCCGATCCATCAATTTTAACCCCTGTTGCCTTGGCTTATATCAGGGCG
AGGGGCGCAGATCCCATGTGTTCGTTCGGGGATTTTGCGGCGGTTAGTGA
TGTGGTGGATGTTGACACTGCGAAGGTGCTTCAGAAGGAGGTCAGTGACG
GGATCATTGCTCCAGGGTATGACCCAGAGGCACTGAAGATTTTGGCCAGC
AAGAAAGGCGGGAAGTTCATTGTGTTGCTGGCGACGGTGGATTTCATCCC
CCCGCCTGTGGAGTACAGGGAGGTTTATGGCGCTGCCTTTAAGCAGAGGA
GAAACGATGCTTTGTTGAGCCCGGCGGACTTGACGAATGTGGTGACGACA
AAGCAATTGGGGGAGGAAGCAGTGCGTGATTTAATTATAGCGTCGATTGC
GATTAAGTACACTCAGAGTAACTCGGTGGGATACGCGCTGAACGGGCAAG
TGATAGGGGTTGGGGCCGGGCAGCAAAGCCGGGTAGATTGTGTGAAGCTG
GCGGGGAGGAAGGTGGAAGTGTGGTGGCTCCGACAGCACCCGAAGGTGCG
TGCCCTGGTTTTCAAGCCGACCGTGAAGAGGCAGGATCGGGTGAATGCCC
GAGTGAGGTACATCGAGGGTGACATCACGGCGGCGGAGCGTCCGCTGTGG
GAGGCGAATTTTGATGAGATTCCCTCGCCCTTGACGGAGGAGGAGAAGAC
GGCATTCATGGCCACATTACAAGGCGTGAGTCTCTCATCGGATGCGTTCT
TCCCATTCCGGGACTCGATTGATCACGCGTCGAAGTACGGGGTGACGTCT
GTGATGCAACCTGGTGGTTCTGTCCAAGATGAGCAGGTGACCGAGTGCTG
CAACGGGTACGGCATGGCGATGGTATTCACCAATATTCGCCTCTTCCATC
ATTAGAGCGTTTTGAAGGGGGTTCTGGGAAGAGGGAAAATTGTGAGCAGT
AAGCGAGAGAGGGAGGAATGTGGGATGAATGGTAGCGTGGGAGAGCAGTA
TATTCTTTTTCCCACACAAAGTTTTGTCGGATGGCGGGGGGTTTATACGG
TGGATATATCCAGGGATTATGTTTGTTACTTTTGAACCAGGTTTTCACGT
ACTTCTTTTAAATGTCGTTTCACCCCGAACATCATCTTTCAAAGAAGAAT
AGAAAAAAAAGTTGCCTATACTTCTTACGACACTTAGAAACGTGAGTGAT
TGATTATGAGATTTAAAGTGCGATGAAATGGATGCAAGGCGCTGCAAATA
TTTCTTCTAGACTAAGAAAAAAACTAAGTATATGGTAAACACAGGTTTAA
TACTATCACACAGGCTTG back to topCoding sequence (CDS) from alignment at scaffold_5:441646..444313+ >mRNA_2478 ID=mRNA_2478|Name=jgi.p|Nanoce1779_2|330258|organism=Nannochloropsis oceanica|type=CDS|length=3672bp|location=Sequence derived from alignment at scaffold_5:441646..444313+ (Nannochloropsis oceanica)
ATGGCGCACGTGATCACCGCCGTCGAAGGGACCCAAGCCGACCACTGGAA
AGTCAAGCGTGCTCTCCTCTCCGTCTCCGATAAAACCGGTCTCTTGGAGC
TGGCCACCTTCCTGGTCGGACAAGGCGTCGAGCTCCTCTCCACCGGGGGA
ACAGCCAAGGCCATCCGTGACGCGGGTCTACCGGTCAAGGACGTTACTGA
CTACACGGGTTCTCCCGAGATTCTGGACGGACGTGTCAAGACTCTTCACC
CCAAGGTGCACGGTGGTCTGCTCGGCGTCCGGGGCAATCCAACGCACGAA
ACGCAAATGAAGGAGAACGGCATTGAGAACATTGATGTCGTCGTCCTCAA
TTTGTATGCGTTCGAACACACCGTGCAAAAAGGTGGGGATTTCGCGACGT
GCATTGAAAACATCGACATCGGTGGTCCTTCTATGCTTCGCTCGTCTGCC
AAGAACCACAACTATGTCGTTATCACCACGTCCCCCTCCCAATACGGAGA
GTTGATAGCGGAAATGAAGGCCAACGACGGGAGCACCTCCCTTGCCCTCC
GCAAGCGTTTTGCCGCTCGTGCATTTGCCACCTCAGCTGCCTACGATTCT
GCCATTGCTGGTTGGATTAATGGACAGCTCGGGGAGCAAGCCCCCGTGGT
TACCCGTGTGTACACCCCGGAATTTCCCCTGAAATACGGCTGCAACCCCC
ACCAGGCTCCTGCTGGTATCTTGTCCATTTTGGGCACGTCTATGCCGTTC
AAGGTCTTGAATGGCACTCCTGGTTATATTAATTTGTTGGACGCCCTTAA
TGCCTACCAGCTCGTGCGTGAGCTCCGCGCTGCTTTGGGCTTGGCGGCTG
CTGCTTCCTTTAAACACGTCTCTCCGGCGGGGACGGGGGTGGCTGTGCCC
TTGACAGCGGAAGAAGCGGAGGCGTACGAGGTTGCCGATCCATCAATTTT
AACCCCTGTTGCCTTGGCTTATATCAGGGCGAGGGGCGCAGATCCCATGT
GTTCGTTCGGGGATTTTGCGGCGGTTAGTGATGTGGTGGATGTTGACACT
GCGAAGGTGCTTCAGAAGGAGGTCAGTGACGGGATCATTGCTCCAGGGTA
TGACCCAGAGGCACTGAAGATTTTGGCCAGCAAGAAAGGCGGGAAGTTCA
TTGTGTTGCTGGCGACGGTGGATTTCATCCCCCCGCCTGTGGAGTACAGG
GAGGTTTATGGCGCTGCCTTTAAGCAGAGGAGAAACGATGCTTTGTTGAG
CCCGGCGGACTTGACGAATGTGGTGACGACAAAGCAATTGGGGGAGGAAG
CAGTGCGTGATTTAATTATAGCGTCGATTGCGATTAAGTACACTCAGAGT
AACTCGGTGGGATACGCGCTGAACGGGCAAGTGATAGGGGTTGGGGCCGG
GCAGCAAAGCCGGGTAGATTGTGTGAAGCTGGCGGGGAGGAAGGTGGAAG
TGTGGTGGCTCCGACAGCACCCGAAGGTGCGTGCCCTGGTTTTCAAGCCG
ACCGTGAAGAGGCAGGATCGGGTGAATGCCCGAGTGAGGTACATCGAGGG
TGACATCACGGCGGCGGAGCGTCCGCTGTGGGAGGCGAATTTTGATGAGA
TTCCCTCGCCCTTGACGGAGGAGGAGAAGACGGCATTCATGGCCACATTA
CAAGGCGTGAGTCTCTCATCGGATGCGTTCTTCCCATTCCGGGACTCGAT
TGATCACGCGTCGAAGTACGGGGTGACGTCTGTGATGCAACCTGGTGGTT
CTGTCCAAGATGAGCAGGTGACCGAGTGCTGCAACGGGTACGGCATGGCG
ATGGTATTCACCAATATTCGCCTCTTCCATCATTAGATGGCGCACGTGAT
CACCGCCGTCGAAGGGACCCAAGCCGACCACTGGAAAGTCAAGCGTGCTC
TCCTCTCCGTCTCCGATAAAACCGGTCTCTTGGAGCTGGCCACCTTCCTG
GTCGGACAAGGCGTCGAGCTCCTCTCCACCGGGGGAACAGCCAAGGCCAT
CCGTGACGCGGGTCTACCGGTCAAGGACGTTACTGACTACACGGGTTCTC
CCGAGATTCTGGACGGACGTGTCAAGACTCTTCACCCCAAGGTGCACGGT
GGTCTGCTCGGCGTCCGGGGCAATCCAACGCACGAAACGCAAATGAAGGA
GAACGGCATTGAGAACATTGATGTCGTCGTCCTCAATTTGTATGCGTTCG
AACACACCGTGCAAAAAGGTGGGGATTTCGCGACGTGCATTGAAAACATC
GACATCGGTGGTCCTTCTATGCTTCGCTCGTCTGCCAAGAACCACAACTA
TGTCGTTATCACCACGTCCCCCTCCCAATACGGAGAGTTGATAGCGGAAA
TGAAGGCCAACGACGGGAGCACCTCCCTTGCCCTCCGCAAGCGTTTTGCC
GCTCGTGCATTTGCCACCTCAGCTGCCTACGATTCTGCCATTGCTGGTTG
GATTAATGGACAGCTCGGGGAGCAAGCCCCCGTGGTTACCCGTGTGTACA
CCCCGGAATTTCCCCTGAAATACGGCTGCAACCCCCACCAGGCTCCTGCT
GGTATCTTGTCCATTTTGGGCACGTCTATGCCGTTCAAGGTCTTGAATGG
CACTCCTGGTTATATTAATTTGTTGGACGCCCTTAATGCCTACCAGCTCG
TGCGTGAGCTCCGCGCTGCTTTGGGCTTGGCGGCTGCTGCTTCCTTTAAA
CACGTCTCTCCGGCGGGGACGGGGGTGGCTGTGCCCTTGACAGCGGAAGA
AGCGGAGGCGTACGAGGTTGCCGATCCATCAATTTTAACCCCTGTTGCCT
TGGCTTATATCAGGGCGAGGGGCGCAGATCCCATGTGTTCGTTCGGGGAT
TTTGCGGCGGTTAGTGATGTGGTGGATGTTGACACTGCGAAGGTGCTTCA
GAAGGAGGTCAGTGACGGGATCATTGCTCCAGGGTATGACCCAGAGGCAC
TGAAGATTTTGGCCAGCAAGAAAGGCGGGAAGTTCATTGTGTTGCTGGCG
ACGGTGGATTTCATCCCCCCGCCTGTGGAGTACAGGGAGGTTTATGGCGC
TGCCTTTAAGCAGAGGAGAAACGATGCTTTGTTGAGCCCGGCGGACTTGA
CGAATGTGGTGACGACAAAGCAATTGGGGGAGGAAGCAGTGCGTGATTTA
ATTATAGCGTCGATTGCGATTAAGTACACTCAGAGTAACTCGGTGGGATA
CGCGCTGAACGGGCAAGTGATAGGGGTTGGGGCCGGGCAGCAAAGCCGGG
TAGATTGTGTGAAGCTGGCGGGGAGGAAGGTGGAAGTGTGGTGGCTCCGA
CAGCACCCGAAGGTGCGTGCCCTGGTTTTCAAGCCGACCGTGAAGAGGCA
GGATCGGGTGAATGCCCGAGTGAGGTACATCGAGGGTGACATCACGGCGG
CGGAGCGTCCGCTGTGGGAGGCGAATTTTGATGAGATTCCCTCGCCCTTG
ACGGAGGAGGAGAAGACGGCATTCATGGCCACATTACAAGGCGTGAGTCT
CTCATCGGATGCGTTCTTCCCATTCCGGGACTCGATTGATCACGCGTCGA
AGTACGGGGTGACGTCTGTGATGCAACCTGGTGGTTCTGTCCAAGATGAG
CAGGTGACCGAGTGCTGCAACGGGTACGGCATGGCGATGGTATTCACCAA
TATTCGCCTCTTCCATCATTAG back to top
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