jgi.p|Nanoce1779_2|525239, mRNA_2477 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|525239
Unique NamemRNA_2477
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1245
Alignment locationscaffold_5:438777..440021 -

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Properties
Property NameValue
TranscriptId525325
TrackFilteredModels2
ProteinId525239
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:438777..440021 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525239gene_2477Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2477CDS_2477Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|525239mRNA_2477-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2477 ID=mRNA_2477|Name=jgi.p|Nanoce1779_2|525239|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp
ATGGGCCTGCGACGCCGCCTCCGCCCGAAAACCCAGCTCCCCGCCCCACA
CGCCGGCGACAAGCCTAATGTCAAGCTAGGCGTATTACTTCTCCAACTTG
GTGGTCCCGAGCGCACCGAGGACGTGGAAGGGTTCCTGTACAACTTATTT
GCCGACCCGGATATTATTCGTTTGCCTGGTATTATCAGTGGACTACAAAA
GCCACTGGCCTACGTCATCTCTAAACGTCGTGCACCGAAATCTAAGGCGG
CCTATGCCTCCATTGGGGGAGGGTCGCCCATAGTTAAATATACGGCAGCA
CAGGCGGAGGGAGTGGAGAAGGTCCTACGGGAAGACATGGGATTGGACGC
CAAGTGTTATGTGGCCATGCGGTACTGGCATCCATTTACGGATGAAGCCT
TGGAGCAAATGCGACAGGACGGGGTGAACTCTGTGGTTGTTGTGCCGCTG
TACCCCCAGTTTTCGATCTCGACCAGTGGAAGCTCTCTGCGGGTTTTGCA
AGATTTGTTTTTCAAAGACGCGCCGCGATGGGGTCAAATTTCGCACACTG
TCGTCCCGGCGTGGTATGATAGGCCAGGTTATGTTCAGGCCATGGGTCGG
TTGATTTCTAGGGAGCTGTCACAATTCACTGAGGAGCAAAAGGCAGAGGG
AAGTCTGCATGTACTGTTCTCTGCGCATGGCGTGCCGCAACGCTACATTG
AGATGGGTGATCCGTACCAGGAGCAGATCCGGAAATGCGTAGAATTGATT
TCGAAGGAGTATGAGGCACCGGGCGTGACGACGCATTTGTCGTATCAGTC
ACGGGTGGGGCCCATCGAATGGCTGAGACCCTACACCGATGACGTTATCG
AAGAGCTGGGCGCGACTGGCATTAAGAACTTGGTGGTCGTCCCTATCTCC
TTTGTCTCGGAGCATATTGAGACACTGGAGGAGATCGACATCGAATACCG
TGAGCTGGCCCATGAGAATGGCATCAAGAATTGGAGAAGGGTCCCGGCGC
TGAACACGGAGCCAGGTTTTATAGAGGATTTGGCGCATATGGTGGTGGAG
GCTCTCCAGACACCCTCGATTTCAGTGACGGAGGCTTGCGCATTGAATAA
TTTGGATATTATGCCCATGGATGGGCGGACCAACGGGGGACAGGATAGCG
ACAATAATGGGAAGTTGGCGGTTTTGGGGTTAGCGGGTGGGGTGGTTTTG
GACTTGTGTAGCGGTCGTGGGGGGTTGGCACATCTCTTGCATTAA
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protein sequence of jgi.p|Nanoce1779_2|525239

>mRNA_2477-protein ID=mRNA_2477-protein|Name=jgi.p|Nanoce1779_2|525239|organism=Nannochloropsis oceanica|type=polypeptide|length=415bp
MGLRRRLRPKTQLPAPHAGDKPNVKLGVLLLQLGGPERTEDVEGFLYNLF
ADPDIIRLPGIISGLQKPLAYVISKRRAPKSKAAYASIGGGSPIVKYTAA
QAEGVEKVLREDMGLDAKCYVAMRYWHPFTDEALEQMRQDGVNSVVVVPL
YPQFSISTSGSSLRVLQDLFFKDAPRWGQISHTVVPAWYDRPGYVQAMGR
LISRELSQFTEEQKAEGSLHVLFSAHGVPQRYIEMGDPYQEQIRKCVELI
SKEYEAPGVTTHLSYQSRVGPIEWLRPYTDDVIEELGATGIKNLVVVPIS
FVSEHIETLEEIDIEYRELAHENGIKNWRRVPALNTEPGFIEDLAHMVVE
ALQTPSISVTEACALNNLDIMPMDGRTNGGQDSDNNGKLAVLGLAGGVVL
DLCSGRGGLAHLLH*
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mRNA from alignment at scaffold_5:438777..440021-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2477 ID=mRNA_2477|Name=jgi.p|Nanoce1779_2|525239|organism=Nannochloropsis oceanica|type=mRNA|length=1245bp|location=Sequence derived from alignment at scaffold_5:438777..440021- (Nannochloropsis oceanica)
ATGGGCCTGCGACGCCGCCTCCGCCCGAAAACCCAGCTCCCCGCCCCACA
CGCCGGCGACAAGCCTAATGTCAAGCTAGGCGTATTACTTCTCCAACTTG
GTGGTCCCGAGCGCACCGAGGACGTGGAAGGGTTCCTGTACAACTTATTT
GCCGACCCGGATATTATTCGTTTGCCTGGTATTATCAGTGGACTACAAAA
GCCACTGGCCTACGTCATCTCTAAACGTCGTGCACCGAAATCTAAGGCGG
CCTATGCCTCCATTGGGGGAGGGTCGCCCATAGTTAAATATACGGCAGCA
CAGGCGGAGGGAGTGGAGAAGGTCCTACGGGAAGACATGGGATTGGACGC
CAAGTGTTATGTGGCCATGCGGTACTGGCATCCATTTACGGATGAAGCCT
TGGAGCAAATGCGACAGGACGGGGTGAACTCTGTGGTTGTTGTGCCGCTG
TACCCCCAGTTTTCGATCTCGACCAGTGGAAGCTCTCTGCGGGTTTTGCA
AGATTTGTTTTTCAAAGACGCGCCGCGATGGGGTCAAATTTCGCACACTG
TCGTCCCGGCGTGGTATGATAGGCCAGGTTATGTTCAGGCCATGGGTCGG
TTGATTTCTAGGGAGCTGTCACAATTCACTGAGGAGCAAAAGGCAGAGGG
AAGTCTGCATGTACTGTTCTCTGCGCATGGCGTGCCGCAACGCTACATTG
AGATGGGTGATCCGTACCAGGAGCAGATCCGGAAATGCGTAGAATTGATT
TCGAAGGAGTATGAGGCACCGGGCGTGACGACGCATTTGTCGTATCAGTC
ACGGGTGGGGCCCATCGAATGGCTGAGACCCTACACCGATGACGTTATCG
AAGAGCTGGGCGCGACTGGCATTAAGAACTTGGTGGTCGTCCCTATCTCC
TTTGTCTCGGAGCATATTGAGACACTGGAGGAGATCGACATCGAATACCG
TGAGCTGGCCCATGAGAATGGCATCAAGAATTGGAGAAGGGTCCCGGCGC
TGAACACGGAGCCAGGTTTTATAGAGGATTTGGCGCATATGGTGGTGGAG
GCTCTCCAGACACCCTCGATTTCAGTGACGGAGGCTTGCGCATTGAATAA
TTTGGATATTATGCCCATGGATGGGCGGACCAACGGGGGACAGGATAGCG
ACAATAATGGGAAGTTGGCGGTTTTGGGGTTAGCGGGTGGGGTGGTTTTG
GACTTGTGTAGCGGTCGTGGGGGGTTGGCACATCTCTTGCATTAA
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Coding sequence (CDS) from alignment at scaffold_5:438777..440021-

>mRNA_2477 ID=mRNA_2477|Name=jgi.p|Nanoce1779_2|525239|organism=Nannochloropsis oceanica|type=CDS|length=1245bp|location=Sequence derived from alignment at scaffold_5:438777..440021- (Nannochloropsis oceanica)
ATGGGCCTGCGACGCCGCCTCCGCCCGAAAACCCAGCTCCCCGCCCCACA
CGCCGGCGACAAGCCTAATGTCAAGCTAGGCGTATTACTTCTCCAACTTG
GTGGTCCCGAGCGCACCGAGGACGTGGAAGGGTTCCTGTACAACTTATTT
GCCGACCCGGATATTATTCGTTTGCCTGGTATTATCAGTGGACTACAAAA
GCCACTGGCCTACGTCATCTCTAAACGTCGTGCACCGAAATCTAAGGCGG
CCTATGCCTCCATTGGGGGAGGGTCGCCCATAGTTAAATATACGGCAGCA
CAGGCGGAGGGAGTGGAGAAGGTCCTACGGGAAGACATGGGATTGGACGC
CAAGTGTTATGTGGCCATGCGGTACTGGCATCCATTTACGGATGAAGCCT
TGGAGCAAATGCGACAGGACGGGGTGAACTCTGTGGTTGTTGTGCCGCTG
TACCCCCAGTTTTCGATCTCGACCAGTGGAAGCTCTCTGCGGGTTTTGCA
AGATTTGTTTTTCAAAGACGCGCCGCGATGGGGTCAAATTTCGCACACTG
TCGTCCCGGCGTGGTATGATAGGCCAGGTTATGTTCAGGCCATGGGTCGG
TTGATTTCTAGGGAGCTGTCACAATTCACTGAGGAGCAAAAGGCAGAGGG
AAGTCTGCATGTACTGTTCTCTGCGCATGGCGTGCCGCAACGCTACATTG
AGATGGGTGATCCGTACCAGGAGCAGATCCGGAAATGCGTAGAATTGATT
TCGAAGGAGTATGAGGCACCGGGCGTGACGACGCATTTGTCGTATCAGTC
ACGGGTGGGGCCCATCGAATGGCTGAGACCCTACACCGATGACGTTATCG
AAGAGCTGGGCGCGACTGGCATTAAGAACTTGGTGGTCGTCCCTATCTCC
TTTGTCTCGGAGCATATTGAGACACTGGAGGAGATCGACATCGAATACCG
TGAGCTGGCCCATGAGAATGGCATCAAGAATTGGAGAAGGGTCCCGGCGC
TGAACACGGAGCCAGGTTTTATAGAGGATTTGGCGCATATGGTGGTGGAG
GCTCTCCAGACACCCTCGATTTCAGTGACGGAGGCTTGCGCATTGAATAA
TTTGGATATTATGCCCATGGATGGGCGGACCAACGGGGGACAGGATAGCG
ACAATAATGGGAAGTTGGCGGTTTTGGGGTTAGCGGGTGGGGTGGTTTTG
GACTTGTGTAGCGGTCGTGGGGGGTTGGCACATCTCTTGCATTAA
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Synonyms
Publications