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Properties
Property Name | Value |
TranscriptId | 580589 |
Track | FilteredModels2 |
ProteinId | 580503 |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_5 | supercontig | scaffold_5:435229..438822 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2476 ID=mRNA_2476|Name=jgi.p|Nanoce1779_2|580503|organism=Nannochloropsis oceanica|type=mRNA|length=3594bp AGGCGCTCTGCTTTTGCGACACAACTGACGAACGCGCCACCCACACGCAA CAAGCATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCG GCTTCCGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAAC CATGGCGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCC GCTCCGCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCC CCTCCTCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAA GGTGAAGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCG CGTCGCCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGC ATCGTCGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCC AAACTACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCT CCTTTCAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTG ACCTACTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTT GGAAATCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATT TGAAAACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAAC TTGGTGAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGC TTGGTTTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCG CGTTGGGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAA TTGAATGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGG ATGTCCGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGT CGGTAGCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTG GGGGAGGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGT GCTTGGGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAAT GGCAAATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTT GAACAGTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTT TTCGTTTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTG TGTTGTTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTAC ATAGGGAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTT TTGTGAGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGA TGTTGATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGT TGGCCGCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGC CCTCTTGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATG GATTTGGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACG TACTCAATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGG ATGGGTTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTT TTAGGCGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGT GTTCCGCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGAT CAGTGGGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGA TGATGAGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCA TACTTTTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAG AGACGATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATA AAAAGGAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAATGGAGAAAG GGGGATGGAGTACTCGTGAGAAGGAGGGGAGAAATCAGAGGTGGAGGAAA ACGTAAAAGGAAGTGGGAGAGCAAGAAAGAAAAGGAAGAGAACAAGAGAA GGTAGTTGAGTGTGTGTGAGCAAGAGAGGAATAAGGGGACGTTAAGAAAA GGGAAAACCGACTGATGGTAAGGGATTGTGTGTGTATTTGTGTGCTCCTG ATGACAGATGAGAGAGAAACTGAAAAGTACTACCAACGAACGAGCTACAT AATCGAAACGAACCATAAACACCCGCTAAATTAGCTTAGCCTCAGACATG AAATTTTGCCACCCCTACGCCTGCAAACAAGCAAGCACTATCGTGGTGAT CGCCATAGTAATTCTGTCCCCGTTTTCCTCTTCATTTTTCCACAAAGCCA CTAGTGGCGGTAAGGTAAATGTTTGCTTCTTTCCTACACTATCCGCCTTG TTGAATCTACTTCCCTCGTCTTCTCATGTCGTGGAACTTTCACGGTCGCG TTTCTGCCATAATCTTCCTCTCTCCTCCCATCATCTCCTGCATTCGCTTG TCTTCGTCATTTCCCGGTGGACCGGTCTCAGGAGGCGAGCGCGGCAGGAG CAGCGAAGGCGAGAGAGAAAGAAAAAAATCGTGACAACTCCCACCTATTC AGACTCTCGGCTTCGCGTCATTGCATGATGGCCCCCTTGCCGTTATTTGT GCAAAGAATGATTGGTCACGCATGGTGATGGTGGTGGTGTTGTTCTTGCT GCTGTCGTTGTTCTTGTGGTTGCTGCTGCTCCTTGGAGGAGATGATCACT ACGGCTCGTGCGTATGTTACATCAATTTGTTTTTTTGTCGTATTTCAGTT AGAGAATACGAGCGCGCTCCCTTTACTTCGCTTAGCCGCTTTTATCTTCC GCTGAGTTTGAGCCACAGACAGCTATGTTTGTACAAGGACACCAACCCAC ACATCGAACACACATCCGCCACACAATCACATACGCAGACACACCAAATT CTGTTTCCTTTGTTGAATTTACGGTCTTCTCTGTTCGTTTTTTCGTACTC GTCATCGCCTAATCCGTCGTTTTGTCTTTGGTTGCTCTCTACAAACATTG GCAGCGTTTTGCTTCGCTCTTTTTATTTCTAATCTATTCTCTAAACCTCC TCCCCTTCGTCCCATCATCCAGACTCCTGCCAAGTTACGATATTTCCGCC ACGGTGGCCTCTACTACTCCTCTTGCCACCAAGTAATTTGTACAAAAAGG GACATTCCCCCTTTCTTTCATCTGTCGTTCCGTGTCCGCCATTCCAACAT TTCCCTCCTCTTCTCCGTCCAAAAACGATAAAAAGGTATACTACAAACAA CAACAAAATCAGGCAAAATCATTATCAAGAGTTAGAGAAAAAGAGTTTAC CTGAAACATCACCTCTTCTTCCCCCCCCCCCTCGAGTAAGCCACATATCT CTCATACACACTTACTCAATTACACCTACTCATTCTCTCTCGCTTAATTT AATGCAAGAGATGTGCCAACCCCCCACGACCGCTACACAAGTCC back to topprotein sequence of jgi.p|Nanoce1779_2|580503 >mRNA_2476-protein ID=mRNA_2476-protein|Name=jgi.p|Nanoce1779_2|580503|organism=Nannochloropsis oceanica|type=polypeptide|length=662bp MVSTRARRSPGDKKAASAVAAATLKAPKRRATMASTASAAPTTPGPVSRS ASPSGNKAPKSRVDPPPPQQEVDAAPKPKQIKVKMPGKAATKPPSANPAS PLFEYEFGGPWGALCIVVGLPVVVLGLYYCCPNYVSSFSPSSSASSPFSF QSSSSPLACLRWTDLTYFLITTLPATLKGYALEINSSPTEAAHALLCYLK TLPSFAQSKGIEMINLVKNELWDPMAFLAIVAWFLFQVLLERVLPGEIAL GVPLPGTEGKRLPYKLNGHLAFWITLLVMGHGCPKFASPVLEEVGIKPSV AMDEGDEVQQVLGEVGEVMTQAAEEVIRGGRVLGGALMQATEGIAAREWQ IPAWEDLMGFGAFPLEQLYDRFPQFAFAAVVFSFGLALCLYVLSFRRGVL LAEGGKSGNILYDFYIGRELNPRSGGFDWKYFCELRPGLIGWVVLNLGML MKQQQLQQVTGEGISWPLVLVCVFQGWYVLDALLNERAILTTMDITTDGF GFMLAFGDLAWVPFTYSMQARYLVGRPVSVGGWVAGCLAGLHLLGYWIFR RANSIKDVFRRDPGSVPHVKYLETARGTKLMISGWWGWARKINYTGDWMM SLAWCGLCGPVHVLPYFYAIYFGVLLVHRAARDDHLCALKYGDDWKQYKK EVRWLFFPGVY* back to topmRNA from alignment at scaffold_5:435229..438822+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2476 ID=mRNA_2476|Name=jgi.p|Nanoce1779_2|580503|organism=Nannochloropsis oceanica|type=mRNA|length=3594bp|location=Sequence derived from alignment at scaffold_5:435229..438822+ (Nannochloropsis oceanica) AGGCGCTCTGCTTTTGCGACACAACTGACGAACGCGCCACCCACACGCAA
CAAGCATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCG
GCTTCCGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAAC
CATGGCGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCC
GCTCCGCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCC
CCTCCTCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAA
GGTGAAGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCG
CGTCGCCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGC
ATCGTCGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCC
AAACTACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCT
CCTTTCAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTG
ACCTACTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTT
GGAAATCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATT
TGAAAACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAAC
TTGGTGAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGC
TTGGTTTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCG
CGTTGGGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAA
TTGAATGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGG
ATGTCCGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGT
CGGTAGCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTG
GGGGAGGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGT
GCTTGGGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAAT
GGCAAATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTT
GAACAGTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTT
TTCGTTTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTG
TGTTGTTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTAC
ATAGGGAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTT
TTGTGAGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGA
TGTTGATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGT
TGGCCGCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGC
CCTCTTGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATG
GATTTGGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACG
TACTCAATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGG
ATGGGTTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTT
TTAGGCGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGT
GTTCCGCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGAT
CAGTGGGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGA
TGATGAGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCA
TACTTTTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAG
AGACGATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATA
AAAAGGAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAATGGAGAAAG
GGGGATGGAGTACTCGTGAGAAGGAGGGGAGAAATCAGAGGTGGAGGAAA
ACGTAAAAGGAAGTGGGAGAGCAAGAAAGAAAAGGAAGAGAACAAGAGAA
GGTAGTTGAGTGTGTGTGAGCAAGAGAGGAATAAGGGGACGTTAAGAAAA
GGGAAAACCGACTGATGGTAAGGGATTGTGTGTGTATTTGTGTGCTCCTG
ATGACAGATGAGAGAGAAACTGAAAAGTACTACCAACGAACGAGCTACAT
AATCGAAACGAACCATAAACACCCGCTAAATTAGCTTAGCCTCAGACATG
AAATTTTGCCACCCCTACGCCTGCAAACAAGCAAGCACTATCGTGGTGAT
CGCCATAGTAATTCTGTCCCCGTTTTCCTCTTCATTTTTCCACAAAGCCA
CTAGTGGCGGTAAGGTAAATGTTTGCTTCTTTCCTACACTATCCGCCTTG
TTGAATCTACTTCCCTCGTCTTCTCATGTCGTGGAACTTTCACGGTCGCG
TTTCTGCCATAATCTTCCTCTCTCCTCCCATCATCTCCTGCATTCGCTTG
TCTTCGTCATTTCCCGGTGGACCGGTCTCAGGAGGCGAGCGCGGCAGGAG
CAGCGAAGGCGAGAGAGAAAGAAAAAAATCGTGACAACTCCCACCTATTC
AGACTCTCGGCTTCGCGTCATTGCATGATGGCCCCCTTGCCGTTATTTGT
GCAAAGAATGATTGGTCACGCATGGTGATGGTGGTGGTGTTGTTCTTGCT
GCTGTCGTTGTTCTTGTGGTTGCTGCTGCTCCTTGGAGGAGATGATCACT
ACGGCTCGTGCGTATGTTACATCAATTTGTTTTTTTGTCGTATTTCAGTT
AGAGAATACGAGCGCGCTCCCTTTACTTCGCTTAGCCGCTTTTATCTTCC
GCTGAGTTTGAGCCACAGACAGCTATGTTTGTACAAGGACACCAACCCAC
ACATCGAACACACATCCGCCACACAATCACATACGCAGACACACCAAATT
CTGTTTCCTTTGTTGAATTTACGGTCTTCTCTGTTCGTTTTTTCGTACTC
GTCATCGCCTAATCCGTCGTTTTGTCTTTGGTTGCTCTCTACAAACATTG
GCAGCGTTTTGCTTCGCTCTTTTTATTTCTAATCTATTCTCTAAACCTCC
TCCCCTTCGTCCCATCATCCAGACTCCTGCCAAGTTACGATATTTCCGCC
ACGGTGGCCTCTACTACTCCTCTTGCCACCAAGTAATTTGTACAAAAAGG
GACATTCCCCCTTTCTTTCATCTGTCGTTCCGTGTCCGCCATTCCAACAT
TTCCCTCCTCTTCTCCGTCCAAAAACGATAAAAAGGTATACTACAAACAA
CAACAAAATCAGGCAAAATCATTATCAAGAGTTAGAGAAAAAGAGTTTAC
CTGAAACATCACCTCTTCTTCCCCCCCCCCCTCGAGTAAGCCACATATCT
CTCATACACACTTACTCAATTACACCTACTCATTCTCTCTCGCTTAATTT
AATGCAAGAGATGTGCCAACCCCCCACGACCGCTACACAAGTCC back to topCoding sequence (CDS) from alignment at scaffold_5:435229..438822+ >mRNA_2476 ID=mRNA_2476|Name=jgi.p|Nanoce1779_2|580503|organism=Nannochloropsis oceanica|type=CDS|length=1986bp|location=Sequence derived from alignment at scaffold_5:435229..438822+ (Nannochloropsis oceanica) ATGGTAAGCACACGGGCACGGCGGTCCCCCGGTGACAAAAAAGCGGCTTC CGCCGTTGCCGCTGCCACGCTGAAAGCCCCTAAGAGGCGCGCAACCATGG CGTCCACCGCGTCCGCTGCTCCCACCACTCCTGGTCCCGTCTCCCGCTCC GCCAGCCCCTCCGGGAATAAGGCGCCAAAGTCTCGCGTCGACCCCCCTCC TCCCCAACAAGAAGTGGACGCAGCACCCAAGCCTAAGCAGATCAAGGTGA AGATGCCCGGTAAGGCAGCCACGAAACCTCCTTCTGCCAATCCCGCGTCG CCTTTGTTCGAGTACGAGTTTGGTGGGCCCTGGGGTGCCCTTTGCATCGT CGTCGGCCTCCCAGTTGTAGTGCTAGGCCTTTACTACTGCTGCCCAAACT ACGTTTCCTCTTTCTCCCCTTCCTCCTCCGCTTCCTCCCCCTTCTCCTTT CAGTCCTCCTCCTCCCCTCTCGCCTGCCTGCGATGGACGGACCTGACCTA CTTTCTCATCACCACTCTCCCAGCCACCCTCAAAGGCTACGCCTTGGAAA TCAATTCCTCCCCCACGGAAGCCGCCCATGCCCTTCTCTGCTATTTGAAA ACCCTTCCTTCCTTTGCACAAAGCAAGGGAATAGAGATGATTAACTTGGT GAAAAATGAGCTCTGGGACCCGATGGCTTTTCTGGCGATTGTCGCTTGGT TTCTCTTCCAGGTGTTGCTTGAGCGGGTGCTGCCGGGAGAAATCGCGTTG GGCGTGCCGCTGCCTGGCACAGAAGGAAAGAGGCTGCCTTATAAATTGAA TGGACATTTGGCGTTTTGGATTACTTTGCTAGTGATGGGGCATGGATGTC CGAAATTTGCATCTCCTGTGTTGGAAGAAGTAGGTATCAAGCCGTCGGTA GCGATGGACGAGGGGGATGAAGTGCAGCAGGTCTTGGGAGAGGTGGGGGA GGTGATGACACAGGCGGCAGAAGAGGTGATCAGAGGAGGACGAGTGCTTG GGGGGGCATTGATGCAGGCGACAGAAGGGATTGCAGCGAGGGAATGGCAA ATCCCGGCTTGGGAAGATTTGATGGGGTTTGGAGCGTTTCCGCTTGAACA GTTGTATGATCGCTTCCCGCAGTTTGCGTTTGCTGCTGTTGTCTTTTCGT TTGGCCTGGCGTTGTGTCTATATGTGCTTAGTTTCCGGAGGGGTGTGTTG TTGGCCGAGGGGGGGAAGAGTGGGAACATCCTATACGATTTTTACATAGG GAGGGAACTGAACCCGAGGAGTGGGGGATTTGATTGGAAATACTTTTGTG AGCTTCGGCCTGGGCTGATTGGATGGGTGGTGCTCAATTTGGGGATGTTG ATGAAGCAGCAGCAGCTGCAGCAGGTCACGGGGGAGGGTATAAGTTGGCC GCTGGTGCTTGTTTGTGTGTTTCAGGGGTGGTATGTTCTGGATGCCCTCT TGAACGAACGGGCTATTCTGACGACAATGGATATCACGACGGATGGATTT GGATTCATGCTTGCGTTTGGGGATTTGGCCTGGGTGCCATTTACGTACTC AATGCAAGCGAGATATTTGGTGGGGAGGCCTGTGAGCGTTGGCGGATGGG TTGCAGGGTGTCTGGCGGGGCTGCATTTGTTGGGGTATTGGATTTTTAGG CGGGCGAATAGTATAAAGGATGTGTTTAGGAGAGACCCCGGAAGTGTTCC GCACGTGAAGTATTTGGAAACGGCGCGAGGGACGAAGTTGATGATCAGTG GGTGGTGGGGCTGGGCGCGTAAGATTAATTACACGGGGGATTGGATGATG AGTTTGGCGTGGTGTGGGTTGTGTGGGCCGGTGCACGTGTTGCCATACTT TTATGCGATCTATTTTGGGGTCTTGCTAGTGCACCGGGCGGCGAGAGACG ATCATTTGTGTGCGTTGAAGTATGGGGACGATTGGAAGCAGTATAAAAAG GAGGTAAGGTGGTTATTTTTTCCGGGGGTGTACTAA back to top
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