jgi.p|Nanoce1779_2|637402, mRNA_2475 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|637402
Unique NamemRNA_2475
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length234
Alignment locationscaffold_5:434214..434748 -

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Properties
Property NameValue
TranscriptId637488
TrackFilteredModels2
ProteinId637402
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:434214..434748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637402gene_2475Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|637402mRNA_2475-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2475CDS_2475Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2475 ID=mRNA_2475|Name=jgi.p|Nanoce1779_2|637402|organism=Nannochloropsis oceanica|type=mRNA|length=234bp
ATGTTTGGTGTCGCTCGTGGACTTACCCGCGTGGCCCCTGCCAAGAACCA
GGCGCAGCTCGTCGCCCGACGCATGATGGGCGGCGACGGCGGACACCACC
CCCACCTCGTCTTTGAGGCCCCGTTCAACAAAGTCTTTGTCGGTGCCCTT
GTGGGCGGCGGCGTGACAGTAGGTGCCGGACTTATCATTGCATCGTGGAA
GTTCCAGAACAAGAAGCAGGGTTTCACCAAGTAA
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protein sequence of jgi.p|Nanoce1779_2|637402

>mRNA_2475-protein ID=mRNA_2475-protein|Name=jgi.p|Nanoce1779_2|637402|organism=Nannochloropsis oceanica|type=polypeptide|length=78bp
MFGVARGLTRVAPAKNQAQLVARRMMGGDGGHHPHLVFEAPFNKVFVGAL
VGGGVTVGAGLIIASWKFQNKKQGFTK*
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mRNA from alignment at scaffold_5:434214..434748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2475 ID=mRNA_2475|Name=jgi.p|Nanoce1779_2|637402|organism=Nannochloropsis oceanica|type=mRNA|length=535bp|location=Sequence derived from alignment at scaffold_5:434214..434748- (Nannochloropsis oceanica)
ATGTTTGGTGTCGCTCGTGGACTTACCCGCGTGGCCCCTGCCAAGAACCA
GGCGCAGCTCGTCGCCCGGTAAGATGGTTTGTGGGGACGGAGGGAGTGGG
GAGGAGGAGAGAGGGGATGACGGCCAGAGCATGCGTACACAAGAGCAGCT
CCGCGGCTCAGGTCACTTGCATGTCCAACATAAGAAGCTGTGTTTTCATG
GTCTGCTACCGCATGCCAGTTCACGCTTACACCATTTCCTTCCTCTGCAT
TTCACTGAAACCTCACACAGACGCATGATGGGCGGCGACGGCGGACACCA
CCCCCACCTCGTCTTTGAGGCCCCGTTCAACAAAGTCTTTGTCGGTGCCC
TTGTGGGCGGCGGCGTGACAGTAGGTGCCGGACTTATCATTGCATCGTGG
AAGTTCCAGAACAAGAAGCAGGTACGTGTAACGGGGGATGTGGCTGGATG
TACCCCATATTTCCTTCCTCATTTCCTCTTGATTCTCACATCCTCGTTTT
CTTTTCCTGTGTGCTTGCAGGGTTTCACCAAGTAA
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Coding sequence (CDS) from alignment at scaffold_5:434214..434748-

>mRNA_2475 ID=mRNA_2475|Name=jgi.p|Nanoce1779_2|637402|organism=Nannochloropsis oceanica|type=CDS|length=702bp|location=Sequence derived from alignment at scaffold_5:434214..434748- (Nannochloropsis oceanica)
GGTTTCACCAAGTAAACGCATGATGGGCGGCGACGGCGGACACCACCCCC
ACCTCGTCTTTGAGGCCCCGTTCAACAAAGTCTTTGTCGGTGCCCTTGTG
GGCGGCGGCGTGACAGTAGGTGCCGGACTTATCATTGCATCGTGGAAGTT
CCAGAACAAGAAGCAGATGTTTGGTGTCGCTCGTGGACTTACCCGCGTGG
CCCCTGCCAAGAACCAGGCGCAGCTCGTCGCCCGGGTTTCACCAAGTAAA
CGCATGATGGGCGGCGACGGCGGACACCACCCCCACCTCGTCTTTGAGGC
CCCGTTCAACAAAGTCTTTGTCGGTGCCCTTGTGGGCGGCGGCGTGACAG
TAGGTGCCGGACTTATCATTGCATCGTGGAAGTTCCAGAACAAGAAGCAG
ATGTTTGGTGTCGCTCGTGGACTTACCCGCGTGGCCCCTGCCAAGAACCA
GGCGCAGCTCGTCGCCCGGGTTTCACCAAGTAAACGCATGATGGGCGGCG
ACGGCGGACACCACCCCCACCTCGTCTTTGAGGCCCCGTTCAACAAAGTC
TTTGTCGGTGCCCTTGTGGGCGGCGGCGTGACAGTAGGTGCCGGACTTAT
CATTGCATCGTGGAAGTTCCAGAACAAGAAGCAGATGTTTGGTGTCGCTC
GTGGACTTACCCGCGTGGCCCCTGCCAAGAACCAGGCGCAGCTCGTCGCC
CG
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Synonyms
Publications