jgi.p|Nanoce1779_2|661704, mRNA_2473 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|661704
Unique Name	mRNA_2473
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1913
Alignment location	scaffold_5:429822..431734 -

Link to JBrowse

Properties


Property Name	Value
TranscriptId	661790
Track	FilteredModels2
ProteinId	661704

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:429822..431734 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661704	gene_2473	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|661704	mRNA_2473-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2473	CDS_2473	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:429822..431734-
coding sequence from alignment at scaffold_5:429822..431734-

mRNA sequence

>mRNA_2473 ID=mRNA_2473|Name=jgi.p|Nanoce1779_2|661704|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp
ATGCTCGGTGGTAAGAAGGAACGGCAACGATCAAGTGGTGGTGGCAGTGG
AGGTGGTTGCCGCTGTGGAGGAGGAGGACACAGGAACAATCATTCTAAAA
ACATCCCTCCCCCATCTGCTCCCAGTTCCATGATAGCAGGGACAGAGGAG
GGTGATATACTGAAGGAGCGCCAGCACTTGTTCGAGGTCGTGGTGGCGTT
TCTCGAATATAGTAAGTTTGCAGGGTTGGAGATTGAGCGTCGCTGGCTCC
ATTTGTGCCGCCTCCCTCAGAAATACGCCCGCTTGCTCCCTACCCGATCC
TTGGCCCCCTCCTTGCGACAGCACCGGGAGGCCATACAGGCAAATCAGGC
CTTCTTAAACGCAGTTGTGCAAGGCGTGGACGAAATTGCACCTGTTGACG
GTATGGTTGCCTTGGCGATGGAGCAACTTGCTCAGCACGCCGCAGCAGCC
CCACGAGAAGTTCTAACAAGCCGGGCAAATATCAGCAAAATACACGCGAC
ATTGCATAGCTGCTTGCGGGAGTGGTCACAAGACGGTATAGCGGAACGCA
CCGCCTGTTTTGATGTAATCATAGACGCACTTACTGAATTCTTGCCCGTC
ACGTCTGCGAATCGACACAAACAAAAGGTGCTCGTGCCTGGGGCAGGGTT
AGGCAGACTCCCACTTGAGATTGTGCACCGGGGCTATGCTTGTCAAGGAA
ATGAATTCTCCTACTTTATGCTCTTAACCTCCAACTTTCTTCTTAATCAC
GTCGAAGAAGCGGGGATGTTCGACCTCCATCCATTCGTTGACCAAAGTTG
TAATATCAAGAAGACAGGGGACAATGTGAGGGAAATTAAGGTGCCGGATG
TGTGCCCTGCAAAACTGCTGTGGAGGGAGGGGTATCGGGAGGGAGACGAG
GTGGGAGGAGTAGGAGCACAGGAAAACGGAAAATTAACAGAGGGTGGAGA
AGGGAGAGAAGGAGGAGAGCATGGCCAGCACCACCCTTCGTCCTCCTCCT
CTCCCTCCCCCTGGCAACCAGACTTCAGCATGACTGCCGGTGAATTTGTC
GAGGTGTATGCCAACCAAAAAGAGTGTTGGGATGCCGTCGTCACGTGCTT
TTTTCTCGATACAGCGCCAATCGTGCTTGAATATATAGAGGCCATCCATC
GTTTGCTTCGTCCTGGGGGAGTCTGGATTAATTTTGGTCCGTTGCTGTAT
CACTGGGCTAGGGGAGATCGGGCGGGAGGGGGGGGGGGAGGGGGATGAGA
GGTTTGCAAAATCTGTAGAATTGAATTGGGAGGATATGAGGCATGTGATG
GTCGGCGCGGGAGGGGAGGGAGTGAGGGATGACGGCTGGGAGTTTGAGAT
TGCAAAGGAGGAGTTCAGAGAAGGGGTGACATATGCGGCAGATGGAAGGT
CGATGATGAGGACAGTATATGATTGTTTGTTTTTTGTGGCGATCAAGAAG
GTGAGGGGGGAGGAGGCAGGGAAGAATGAGGTAATGGCAAAGGGATAGAG
CCGGGTCCCGTCTGATTGCCTGGATTTGGAGGCGGTAAAGAAGCGGAACA
GGCCCGTGTGAGCGAATGATTTTTGACGGGATGGATTCCTTGAAGAGAGG
GAATTAAGAAAGTAGAACAGGACGATTGCTCTACGATCTATGGCCGCCAC
ACGAAAAGACACACAATAAATATGTGTATACAGACACAAATATGACCAGT
GAGTTGAATAAACAGCGCCTCTCCCGCCACACGTTGCGCGCTGCCCTACC
TGTGAATTATCCATCTTGACTTGTACTTCCTTCATTTTCATCATCTATCC
TAGTTCTCAAAAAAGACGGAAAATGTGGCATTTACTGCTGATCTTTTTTT
AAAAAAACAATGTCATGGCTCCACCCACGCAACCCGCGCCATCACGCAGC
GTCGCGGTTGAGA

protein sequence of jgi.p|Nanoce1779_2|661704

>mRNA_2473-protein ID=mRNA_2473-protein|Name=jgi.p|Nanoce1779_2|661704|organism=Nannochloropsis oceanica|type=polypeptide|length=416bp
MLGGKKERQRSSGGGSGGGCRCGGGGHRNNHSKNIPPPSAPSSMIAGTEE
GDILKERQHLFEVVVAFLEYSKFAGLEIERRWLHLCRLPQKYARLLPTRS
LAPSLRQHREAIQANQAFLNAVVQGVDEIAPVDGMVALAMEQLAQHAAAA
PREVLTSRANISKIHATLHSCLREWSQDGIAERTACFDVIIDALTEFLPV
TSANRHKQKVLVPGAGLGRLPLEIVHRGYACQGNEFSYFMLLTSNFLLNH
VEEAGMFDLHPFVDQSCNIKKTGDNVREIKVPDVCPAKLLWREGYREGDE
VGGVGAQENGKLTEGGEGREGGEHGQHHPSSSSSPSPWQPDFSMTAGEFV
EVYANQKECWDAVVTCFFLDTAPIVLEYIEAIHRLLRPGGVWINFGPLLY
HWARGDRAGGGGGGG*

mRNA from alignment at scaffold_5:429822..431734-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2473 ID=mRNA_2473|Name=jgi.p|Nanoce1779_2|661704|organism=Nannochloropsis oceanica|type=mRNA|length=1913bp|location=Sequence derived from alignment at scaffold_5:429822..431734- (Nannochloropsis oceanica)
ATGCTCGGTGGTAAGAAGGAACGGCAACGATCAAGTGGTGGTGGCAGTGG
AGGTGGTTGCCGCTGTGGAGGAGGAGGACACAGGAACAATCATTCTAAAA
ACATCCCTCCCCCATCTGCTCCCAGTTCCATGATAGCAGGGACAGAGGAG
GGTGATATACTGAAGGAGCGCCAGCACTTGTTCGAGGTCGTGGTGGCGTT
TCTCGAATATAGTAAGTTTGCAGGGTTGGAGATTGAGCGTCGCTGGCTCC
ATTTGTGCCGCCTCCCTCAGAAATACGCCCGCTTGCTCCCTACCCGATCC
TTGGCCCCCTCCTTGCGACAGCACCGGGAGGCCATACAGGCAAATCAGGC
CTTCTTAAACGCAGTTGTGCAAGGCGTGGACGAAATTGCACCTGTTGACG
GTATGGTTGCCTTGGCGATGGAGCAACTTGCTCAGCACGCCGCAGCAGCC
CCACGAGAAGTTCTAACAAGCCGGGCAAATATCAGCAAAATACACGCGAC
ATTGCATAGCTGCTTGCGGGAGTGGTCACAAGACGGTATAGCGGAACGCA
CCGCCTGTTTTGATGTAATCATAGACGCACTTACTGAATTCTTGCCCGTC
ACGTCTGCGAATCGACACAAACAAAAGGTGCTCGTGCCTGGGGCAGGGTT
AGGCAGACTCCCACTTGAGATTGTGCACCGGGGCTATGCTTGTCAAGGAA
ATGAATTCTCCTACTTTATGCTCTTAACCTCCAACTTTCTTCTTAATCAC
GTCGAAGAAGCGGGGATGTTCGACCTCCATCCATTCGTTGACCAAAGTTG
TAATATCAAGAAGACAGGGGACAATGTGAGGGAAATTAAGGTGCCGGATG
TGTGCCCTGCAAAACTGCTGTGGAGGGAGGGGTATCGGGAGGGAGACGAG
GTGGGAGGAGTAGGAGCACAGGAAAACGGAAAATTAACAGAGGGTGGAGA
AGGGAGAGAAGGAGGAGAGCATGGCCAGCACCACCCTTCGTCCTCCTCCT
CTCCCTCCCCCTGGCAACCAGACTTCAGCATGACTGCCGGTGAATTTGTC
GAGGTGTATGCCAACCAAAAAGAGTGTTGGGATGCCGTCGTCACGTGCTT
TTTTCTCGATACAGCGCCAATCGTGCTTGAATATATAGAGGCCATCCATC
GTTTGCTTCGTCCTGGGGGAGTCTGGATTAATTTTGGTCCGTTGCTGTAT
CACTGGGCTAGGGGAGATCGGGCGGGAGGGGGGGGGGGAGGGGGATGAGA
GGTTTGCAAAATCTGTAGAATTGAATTGGGAGGATATGAGGCATGTGATG
GTCGGCGCGGGAGGGGAGGGAGTGAGGGATGACGGCTGGGAGTTTGAGAT
TGCAAAGGAGGAGTTCAGAGAAGGGGTGACATATGCGGCAGATGGAAGGT
CGATGATGAGGACAGTATATGATTGTTTGTTTTTTGTGGCGATCAAGAAG
GTGAGGGGGGAGGAGGCAGGGAAGAATGAGGTAATGGCAAAGGGATAGAG
CCGGGTCCCGTCTGATTGCCTGGATTTGGAGGCGGTAAAGAAGCGGAACA
GGCCCGTGTGAGCGAATGATTTTTGACGGGATGGATTCCTTGAAGAGAGG
GAATTAAGAAAGTAGAACAGGACGATTGCTCTACGATCTATGGCCGCCAC
ACGAAAAGACACACAATAAATATGTGTATACAGACACAAATATGACCAGT
GAGTTGAATAAACAGCGCCTCTCCCGCCACACGTTGCGCGCTGCCCTACC
TGTGAATTATCCATCTTGACTTGTACTTCCTTCATTTTCATCATCTATCC
TAGTTCTCAAAAAAGACGGAAAATGTGGCATTTACTGCTGATCTTTTTTT
AAAAAAACAATGTCATGGCTCCACCCACGCAACCCGCGCCATCACGCAGC
GTCGCGGTTGAGA

Coding sequence (CDS) from alignment at scaffold_5:429822..431734-

>mRNA_2473 ID=mRNA_2473|Name=jgi.p|Nanoce1779_2|661704|organism=Nannochloropsis oceanica|type=CDS|length=1248bp|location=Sequence derived from alignment at scaffold_5:429822..431734- (Nannochloropsis oceanica)
ATGCTCGGTGGTAAGAAGGAACGGCAACGATCAAGTGGTGGTGGCAGTGG
AGGTGGTTGCCGCTGTGGAGGAGGAGGACACAGGAACAATCATTCTAAAA
ACATCCCTCCCCCATCTGCTCCCAGTTCCATGATAGCAGGGACAGAGGAG
GGTGATATACTGAAGGAGCGCCAGCACTTGTTCGAGGTCGTGGTGGCGTT
TCTCGAATATAGTAAGTTTGCAGGGTTGGAGATTGAGCGTCGCTGGCTCC
ATTTGTGCCGCCTCCCTCAGAAATACGCCCGCTTGCTCCCTACCCGATCC
TTGGCCCCCTCCTTGCGACAGCACCGGGAGGCCATACAGGCAAATCAGGC
CTTCTTAAACGCAGTTGTGCAAGGCGTGGACGAAATTGCACCTGTTGACG
GTATGGTTGCCTTGGCGATGGAGCAACTTGCTCAGCACGCCGCAGCAGCC
CCACGAGAAGTTCTAACAAGCCGGGCAAATATCAGCAAAATACACGCGAC
ATTGCATAGCTGCTTGCGGGAGTGGTCACAAGACGGTATAGCGGAACGCA
CCGCCTGTTTTGATGTAATCATAGACGCACTTACTGAATTCTTGCCCGTC
ACGTCTGCGAATCGACACAAACAAAAGGTGCTCGTGCCTGGGGCAGGGTT
AGGCAGACTCCCACTTGAGATTGTGCACCGGGGCTATGCTTGTCAAGGAA
ATGAATTCTCCTACTTTATGCTCTTAACCTCCAACTTTCTTCTTAATCAC
GTCGAAGAAGCGGGGATGTTCGACCTCCATCCATTCGTTGACCAAAGTTG
TAATATCAAGAAGACAGGGGACAATGTGAGGGAAATTAAGGTGCCGGATG
TGTGCCCTGCAAAACTGCTGTGGAGGGAGGGGTATCGGGAGGGAGACGAG
GTGGGAGGAGTAGGAGCACAGGAAAACGGAAAATTAACAGAGGGTGGAGA
AGGGAGAGAAGGAGGAGAGCATGGCCAGCACCACCCTTCGTCCTCCTCCT
CTCCCTCCCCCTGGCAACCAGACTTCAGCATGACTGCCGGTGAATTTGTC
GAGGTGTATGCCAACCAAAAAGAGTGTTGGGATGCCGTCGTCACGTGCTT
TTTTCTCGATACAGCGCCAATCGTGCTTGAATATATAGAGGCCATCCATC
GTTTGCTTCGTCCTGGGGGAGTCTGGATTAATTTTGGTCCGTTGCTGTAT
CACTGGGCTAGGGGAGATCGGGCGGGAGGGGGGGGGGGAGGGGGATGA

Synonyms

Publications