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Properties
| Property Name | Value |
|---|
| TranscriptId | 580577 |
| Track | FilteredModels2 |
| ProteinId | 580491 |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_5 | supercontig | scaffold_5:428055..430515 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >mRNA_2472 ID=mRNA_2472|Name=jgi.p|Nanoce1779_2|580491|organism=Nannochloropsis oceanica|type=mRNA|length=1800bp
CAGGCGAATCCTCGATGACGATAGCCATGGCCACAACCTCGTCGCCTAAA
CATCCTCCGCCTGATCTGAAGGAACGCCTTATTGGGGGGTTACTCCTCGC
TTCGCTAATCCATGTATGGCTCTTTGGTGTCATCGTTGTACCCTTGGCCA
TGTACCAGTTGCTGGCACAGGGCGACTACCGCATCGCCCTTGGCCTCCTC
CTTTATTACGCCTACCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGT
TCGCAACATCTATAGAGCAGGCAACCGATATTTCTACCCACAAGAGGTCA
TTTTTGATGGCTTCAATGAGATCAAACCCGATTCGAGGTCATTGATTTGC
ATGCACCCGCACGGGATCTTGACGATTGGTTGGGCGTTGACCAGCACGAG
TCCGACCATGGCGCACGCCAACGTGAAGTGGCTGGTGACAGAAACTTTGT
TGCGGCTGCCTTTTATCAGCGACTTCCTCTCCTGGAACGGTTGTGCACAC
GCCAGCAAGAGCTACATGCAAAATCGTATGACGAAGGGTGCGAATCTTGC
TCTGCTCCCCGGCGGATTTGAAGAGGCTTCTCTCTATCAACGCAACACTT
ATCGTGTTTACGTCAGAAAGCGCACAGGCTTTATTGTGTATGCCCTCAGG
TATGGGTACAAGATTTACCCATCGTTCGTCTTTGGGGAGGAAAAGTGTTA
TTTCTCCTTGATACCCGACTGGGGTTGGCTGACAGCGACCAGGTTATGGT
TGAACCAGTACCGGATACCGGCAGTTGCGTTCGTCGGAAAGTTATTTTTG
GTTCCTGGTTGGGATTCACATTTGATAACGGTGATCGGCGCCCCCGTGGT
GTTGCCGAGGCTGGACAAGCCGACTGAGGAGGAGGTGGGGAAATACCATT
TAATGTATGTGAGTGCATTGATGGAATTATTCGAGAAGCACAAACGGCAA
TATTGTGAAAAGGGGGCGAAGTTGGAGTTGTGGTAGGAGATGGAGAGAGG
GAAGGCAAGGTACGCATATGTACAGAGTTCTGGCGGGAGCAATCGACTGA
TGGGAGGCGGGAGAGGGGCAAGGGGAAACAACGAAACTTAGAGAAAGGGA
GAGACTTCTCAACCGCGACGCTGCGTGATGGCGCGGGTTGCGTGGGTGGA
GCCATGACATTGTTTTTTTAAAAAAAGATCAGCAGTAAATGCCACATTTT
CCGTCTTTTTTGAGAACTAGGATAGATGATGAAAATGAAGGAAGTACAAG
TCAAGATGGATAATTCACAGGTAGGGCAGCGCGCAACGTGTGGCGGGAGA
GGCGCTGTTTATTCAACTCACTGGTCATATTTGTGTCTGTATACACATAT
TTATTGTGTGTCTTTTCGTGTGGCGGCCATAGATCGTAGAGCAATCGTCC
TGTTCTACTTTCTTAATTCCCTCTCTTCAAGGAATCCATCCCGTCAAAAA
TCATTCGCTCACACGGGCCTGTTCCGCTTCTTTACCGCCTCCAAATCCAG
GCAATCAGACGGGACCCGGCTCTATCCCTTTGCCATTACCTCATTCTTCC
CTGCCTCCTCCCCCCTCACCTTCTTGATCGCCACAAAAAACAAACAATCA
TATACTGTCCTCATCATCGACCTTCCATCTGCCGCATATGTCACCCCTTC
TCTGAACTCCTCCTTTGCAATCTCAAACTCCCAGCCGTCATCCCTCACTC
CCTCCCCTCCCGCGCCGACCATCACATGCCTCATATCCTCCCAATTCAAT
TCTACAGATTTTGCAAACCTCTCATCCCCCTCCCCCCCCCCCTCCCGCCC back to topprotein sequence of jgi.p|Nanoce1779_2|580491 >mRNA_2472-protein ID=mRNA_2472-protein|Name=jgi.p|Nanoce1779_2|580491|organism=Nannochloropsis oceanica|type=polypeptide|length=324bp
MTIAMATTSSPKHPPPDLKERLIGGLLLASLIHVWLFGVIVVPLAMYQLL
AQGDYRIALGLLLYYAYRSVFPTKEWGIVRNIYRAGNRYFYPQEVIFDGF
NEIKPDSRSLICMHPHGILTIGWALTSTSPTMAHANVKWLVTETLLRLPF
ISDFLSWNGCAHASKSYMQNRMTKGANLALLPGGFEEASLYQRNTYRVYV
RKRTGFIVYALRYGYKIYPSFVFGEEKCYFSLIPDWGWLTATRLWLNQYR
IPAVAFVGKLFLVPGWDSHLITVIGAPVVLPRLDKPTEEEVGKYHLMYVS
ALMELFEKHKRQYCEKGAKLELW* back to topmRNA from alignment at scaffold_5:428055..430515+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_2472 ID=mRNA_2472|Name=jgi.p|Nanoce1779_2|580491|organism=Nannochloropsis oceanica|type=mRNA|length=2461bp|location=Sequence derived from alignment at scaffold_5:428055..430515+ (Nannochloropsis oceanica)
CAGGCGAATCCTCGATGACGATAGCCATGGCCACAACCTCGTCGCCTAAA
CATCCTCCGGTACGTAGTGTGATACATCGCTGCTGCTTGGGCTCGAGTCC
ACCTCAGCCGCCCCTTCCCGGCCCATGAGCAGGACATGAAGACCCACGCG
AGCCTTGTCCTACACCATCCTGCGACGACAAGAATTATTTTTTGTGACTT
TATATACGCCATATAATATGCCTGCTCATTCCCATCGTAGCAGTACTTCC
CTTGTCACGCTCGTCCGGTCCCAACTCCATACCTCAACTTACACAAAACC
CCTCCTCCTTCAACCCCAACCACGCAGCCTGATCTGAAGGAACGCCTTAT
TGGGGGGTTACTCCTCGCTTCGCTAATCCATGTATGGCTCTTTGGTGTCA
TCGTTGTACCCTTGGCCATGTACCAGTTGCTGGCACAGGTAGGAGGCACT
GGGGGCAAGGGGATGGGGGAAGGAGTGCTTTCTCGTGTCCTCCCTGGCCG
TCGTTGATTAGGTGGTGATTTAAATCAGGCACATGGGTCATTTACTCTTC
ACATCATTCATCATCTCATATGTTCGTGCCTCATTCTGACTTCCATCATC
CTTTCACCAACACAGGGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTA
TTACGCCTACCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCA
ACATCTATAGAGCAGGCAACCGATATTTCTACCCACAAGAGGTCATTTTT
GATGGCTTCAATGAGATCAAACCCGATTCGAGGTCATTGATTTGCATGCA
CCCGCACGGGATCTTGACGATTGGTTGGGCGTTGACCAGCACGAGTCCGA
CCATGGCGCACGCCAACGTGAAGTGGCTGGTGACAGAAACTTTGTTGCGG
CTGCCTTTTATCAGGTAATTAATGGCATTATCCTTCTTATCCGCCCCCCT
TCCCCCTTCTTCCTTCCTCTTACCTTCCATCAGAACTTGACTTGTACATT
TTCTTCTTTCCTTCCTCATTCCCATCTTCCTTCGGAAGTTGATTCGCACA
TTTTCTTTCACAAATACGGTCCGATCCTCGCTCCTTCCCTTCTTGCTTCC
CAACTTCCCTCCTTCTCTTCCTCTCAACAGCGACTTCCTCTCCTGGAACG
GTTGTGCACACGCCAGCAAGAGCTACATGCAAAATCGTATGACGAAGGGT
GCGAATCTTGCTCTGCTCCCCGGCGGATTTGAAGAGGCTTCTCTCTATCA
ACGCAACACTTATCGTGTTTACGTCAGAAAGCGCACAGGCTTTATTGTGT
ATGCCCTCAGGTATGGGTACAAGATTTACCCATCGTTCGTCTTTGGGGAG
GAAAAGTGTTATTTCTCCTTGATACCCGACTGGGGTTGGCTGACAGCGAC
CAGGTTATGGTTGAACCAGTACCGGATACCGGCAGTTGCGTTCGTCGGAA
AGTTATTTTTGGTTCCTGGTTGGGATTCACATTTGATAACGGTGATCGGC
GCCCCCGTGGTGTTGCCGAGGCTGGACAAGCCGACTGAGGAGGAGGTGGG
GAAATACCATTTAATGTATGTGAGTGCATTGATGGAATTATTCGAGAAGC
ACAAACGGCAATATTGTGAAAAGGGGGCGAAGTTGGAGTTGTGGTAGGAG
ATGGAGAGAGGGAAGGCAAGGTACGCATATGTACAGAGTTCTGGCGGGAG
CAATCGACTGATGGGAGGCGGGAGAGGGGCAAGGGGAAACAACGAAACTT
AGAGAAAGGGAGAGACTTCTCAACCGCGACGCTGCGTGATGGCGCGGGTT
GCGTGGGTGGAGCCATGACATTGTTTTTTTAAAAAAAGATCAGCAGTAAA
TGCCACATTTTCCGTCTTTTTTGAGAACTAGGATAGATGATGAAAATGAA
GGAAGTACAAGTCAAGATGGATAATTCACAGGTAGGGCAGCGCGCAACGT
GTGGCGGGAGAGGCGCTGTTTATTCAACTCACTGGTCATATTTGTGTCTG
TATACACATATTTATTGTGTGTCTTTTCGTGTGGCGGCCATAGATCGTAG
AGCAATCGTCCTGTTCTACTTTCTTAATTCCCTCTCTTCAAGGAATCCAT
CCCGTCAAAAATCATTCGCTCACACGGGCCTGTTCCGCTTCTTTACCGCC
TCCAAATCCAGGCAATCAGACGGGACCCGGCTCTATCCCTTTGCCATTAC
CTCATTCTTCCCTGCCTCCTCCCCCCTCACCTTCTTGATCGCCACAAAAA
ACAAACAATCATATACTGTCCTCATCATCGACCTTCCATCTGCCGCATAT
GTCACCCCTTCTCTGAACTCCTCCTTTGCAATCTCAAACTCCCAGCCGTC
ATCCCTCACTCCCTCCCCTCCCGCGCCGACCATCACATGCCTCATATCCT
CCCAATTCAATTCTACAGATTTTGCAAACCTCTCATCCCCCTCCCCCCCC
CCCTCCCGCCC back to topCoding sequence (CDS) from alignment at scaffold_5:428055..430515+ >mRNA_2472 ID=mRNA_2472|Name=jgi.p|Nanoce1779_2|580491|organism=Nannochloropsis oceanica|type=CDS|length=3888bp|location=Sequence derived from alignment at scaffold_5:428055..430515+ (Nannochloropsis oceanica)
ATGACGATAGCCATGGCCACAACCTCGTCGCCTAAACATCCTCCGCCTGA
TCTGAAGGAACGCCTTATTGGGGGGTTACTCCTCGCTTCGCTAATCCATG
TATGGCTCTTTGGTGTCATCGTTGTACCCTTGGCCATGTACCAGTTGCTG
GCACAGGGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTATTACGCCTA
CCGCTCGGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCAACATCTATA
GAGCAGGCAACCGATATTTCTACCCACAAGAGGTCATTTTTGATGGCTTC
AATGAGATCAAACCCGATTCGAGGTCATTGATTTGCATGCACCCGCACGG
GATCTTGACGATTGGTTGGGCGTTGACCAGCACGAGTCCGACCATGGCGC
ACGCCAACGTGAAGTGGCTGGTGACAGAAACTTTGTTGCGGCTGCCTTTT
ATCAGCGACTTCCTCTCCTGGAACGGTTGTGCACACGCCAGCAAGAGCTA
CATGCAAAATCGTATGACGAAGGGTGCGAATCTTGCTCTGCTCCCCGGCG
GATTTGAAGAGGCTTCTCTCTATCAACGCAACACTTATCGTGTTTACGTC
AGAAAGCGCACAGGCTTTATTGTGTATGCCCTCAGGTATGGGTACAAGAT
TTACCCATCGTTCGTCTTTGGGGAGGAAAAGTGTTATTTCTCCTTGATAC
CCGACTGGGGTTGGCTGACAGCGACCAGGTTATGGTTGAACCAGTACCGG
ATACCGGCAGTTGCGTTCGTCGGAAAGTTATTTTTGGTTCCTGGTTGGGA
TTCACATTTGATAACGGTGATCGGCGCCCCCGTGGTGTTGCCGAGGCTGG
ACAAGCCGACTGAGGAGGAGGTGGGGAAATACCATTTAATGTATGTGAGT
GCATTGATGGAATTATTCGAGAAGCACAAACGGCAATATTGTGAAAAGGG
GGCGAAGTTGGAGTTGTGGTAGATGACGATAGCCATGGCCACAACCTCGT
CGCCTAAACATCCTCCGCCTGATCTGAAGGAACGCCTTATTGGGGGGTTA
CTCCTCGCTTCGCTAATCCATGTATGGCTCTTTGGTGTCATCGTTGTACC
CTTGGCCATGTACCAGTTGCTGGCACAGGGCGACTACCGCATCGCCCTTG
GCCTCCTCCTTTATTACGCCTACCGCTCGGTCTTTCCGACGAAGGAATGG
GGCATCGTTCGCAACATCTATAGAGCAGGCAACCGATATTTCTACCCACA
AGAGGTCATTTTTGATGGCTTCAATGAGATCAAACCCGATTCGAGGTCAT
TGATTTGCATGCACCCGCACGGGATCTTGACGATTGGTTGGGCGTTGACC
AGCACGAGTCCGACCATGGCGCACGCCAACGTGAAGTGGCTGGTGACAGA
AACTTTGTTGCGGCTGCCTTTTATCAGCGACTTCCTCTCCTGGAACGGTT
GTGCACACGCCAGCAAGAGCTACATGCAAAATCGTATGACGAAGGGTGCG
AATCTTGCTCTGCTCCCCGGCGGATTTGAAGAGGCTTCTCTCTATCAACG
CAACACTTATCGTGTTTACGTCAGAAAGCGCACAGGCTTTATTGTGTATG
CCCTCAGGTATGGGTACAAGATTTACCCATCGTTCGTCTTTGGGGAGGAA
AAGTGTTATTTCTCCTTGATACCCGACTGGGGTTGGCTGACAGCGACCAG
GTTATGGTTGAACCAGTACCGGATACCGGCAGTTGCGTTCGTCGGAAAGT
TATTTTTGGTTCCTGGTTGGGATTCACATTTGATAACGGTGATCGGCGCC
CCCGTGGTGTTGCCGAGGCTGGACAAGCCGACTGAGGAGGAGGTGGGGAA
ATACCATTTAATGTATGTGAGTGCATTGATGGAATTATTCGAGAAGCACA
AACGGCAATATTGTGAAAAGGGGGCGAAGTTGGAGTTGTGGTAGATGACG
ATAGCCATGGCCACAACCTCGTCGCCTAAACATCCTCCGCCTGATCTGAA
GGAACGCCTTATTGGGGGGTTACTCCTCGCTTCGCTAATCCATGTATGGC
TCTTTGGTGTCATCGTTGTACCCTTGGCCATGTACCAGTTGCTGGCACAG
GGCGACTACCGCATCGCCCTTGGCCTCCTCCTTTATTACGCCTACCGCTC
GGTCTTTCCGACGAAGGAATGGGGCATCGTTCGCAACATCTATAGAGCAG
GCAACCGATATTTCTACCCACAAGAGGTCATTTTTGATGGCTTCAATGAG
ATCAAACCCGATTCGAGGTCATTGATTTGCATGCACCCGCACGGGATCTT
GACGATTGGTTGGGCGTTGACCAGCACGAGTCCGACCATGGCGCACGCCA
ACGTGAAGTGGCTGGTGACAGAAACTTTGTTGCGGCTGCCTTTTATCAGC
GACTTCCTCTCCTGGAACGGTTGTGCACACGCCAGCAAGAGCTACATGCA
AAATCGTATGACGAAGGGTGCGAATCTTGCTCTGCTCCCCGGCGGATTTG
AAGAGGCTTCTCTCTATCAACGCAACACTTATCGTGTTTACGTCAGAAAG
CGCACAGGCTTTATTGTGTATGCCCTCAGGTATGGGTACAAGATTTACCC
ATCGTTCGTCTTTGGGGAGGAAAAGTGTTATTTCTCCTTGATACCCGACT
GGGGTTGGCTGACAGCGACCAGGTTATGGTTGAACCAGTACCGGATACCG
GCAGTTGCGTTCGTCGGAAAGTTATTTTTGGTTCCTGGTTGGGATTCACA
TTTGATAACGGTGATCGGCGCCCCCGTGGTGTTGCCGAGGCTGGACAAGC
CGACTGAGGAGGAGGTGGGGAAATACCATTTAATGTATGTGAGTGCATTG
ATGGAATTATTCGAGAAGCACAAACGGCAATATTGTGAAAAGGGGGCGAA
GTTGGAGTTGTGGTAGATGACGATAGCCATGGCCACAACCTCGTCGCCTA
AACATCCTCCGCCTGATCTGAAGGAACGCCTTATTGGGGGGTTACTCCTC
GCTTCGCTAATCCATGTATGGCTCTTTGGTGTCATCGTTGTACCCTTGGC
CATGTACCAGTTGCTGGCACAGGGCGACTACCGCATCGCCCTTGGCCTCC
TCCTTTATTACGCCTACCGCTCGGTCTTTCCGACGAAGGAATGGGGCATC
GTTCGCAACATCTATAGAGCAGGCAACCGATATTTCTACCCACAAGAGGT
CATTTTTGATGGCTTCAATGAGATCAAACCCGATTCGAGGTCATTGATTT
GCATGCACCCGCACGGGATCTTGACGATTGGTTGGGCGTTGACCAGCACG
AGTCCGACCATGGCGCACGCCAACGTGAAGTGGCTGGTGACAGAAACTTT
GTTGCGGCTGCCTTTTATCAGCGACTTCCTCTCCTGGAACGGTTGTGCAC
ACGCCAGCAAGAGCTACATGCAAAATCGTATGACGAAGGGTGCGAATCTT
GCTCTGCTCCCCGGCGGATTTGAAGAGGCTTCTCTCTATCAACGCAACAC
TTATCGTGTTTACGTCAGAAAGCGCACAGGCTTTATTGTGTATGCCCTCA
GGTATGGGTACAAGATTTACCCATCGTTCGTCTTTGGGGAGGAAAAGTGT
TATTTCTCCTTGATACCCGACTGGGGTTGGCTGACAGCGACCAGGTTATG
GTTGAACCAGTACCGGATACCGGCAGTTGCGTTCGTCGGAAAGTTATTTT
TGGTTCCTGGTTGGGATTCACATTTGATAACGGTGATCGGCGCCCCCGTG
GTGTTGCCGAGGCTGGACAAGCCGACTGAGGAGGAGGTGGGGAAATACCA
TTTAATGTATGTGAGTGCATTGATGGAATTATTCGAGAAGCACAAACGGC
AATATTGTGAAAAGGGGGCGAAGTTGGAGTTGTGGTAG back to top
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