jgi.p|Nanoce1779_2|580485, mRNA_2470 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580485
Unique NamemRNA_2470
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length2393
Alignment locationscaffold_5:421130..423522 -

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Properties
Property NameValue
TranscriptId580571
TrackFilteredModels2
ProteinId580485
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:421130..423522 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580485gene_2470Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580485mRNA_2470-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2470CDS_2470Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2470 ID=mRNA_2470|Name=jgi.p|Nanoce1779_2|580485|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp
CAGCACTCGCAGCCATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCA
AGCGCATTTACTATTGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGC
GTGCCTCAACACGGTCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCT
CAATCCTCACCGACCTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACG
GCCATGACAATCCTTGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCC
CAATGACCACTGGGGTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTT
TCATCGTCGGCGGTGTGCTCACCGCCATCACCAGTTTAGACTCCATCCTC
GTCGGCCGGTTCTTGCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGC
CCCTGTGTTGCTTTCAGAGATTGCATCCAACCAGACCCGTGGGGCAATTA
CCAGCTTGCATCAATTGAATATCACCTTGGGAATTTTGATTTCAAACTTG
ATCGGCTACGGCTTTGTCCCAAACATCTCAGGGGGATGGAGATATGTCCA
GCTCTTCGTTGTTCTACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCG
TACCCGAGTCGCCTCGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCA
CGAGACGTCCTGAGCCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGC
GCAGGCCGCGGGGGCCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGA
AAGAGCTTGGTTCAACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACC
TTTAGCTACGGGACTGCCATGAGGATTGGTATGTTGATGATGTTCTTTAG
TGCAATGACAGGGATTAACACTGTCATTTTCTATTCGACCACGATCTTTG
CGTTGGCGGGGGTCGAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTG
CTGAATGTTTTTATCACTATGGTCTCCGGATATTTGGTTGATAAGGCGGG
AAGGAAGGTGCTATTGACCGGAGGGACGTGGATCATGCTTATTAGTTTGT
TGTTGCTGGGTGGGATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATC
TCGATCGTTGCTGTCGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAAT
TGGGATTGGGGCAGTGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCA
AGATCCGGTCGAAGGCATATTCCATTTTTGTGACGAGCAATTGGACGGCT
AATCTCCTTATTTCTCTTGTGACCTTGTCATTGATTGATACGCTGGGGGA
GGCGGTCGCCCCTGCGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGG
TGGCGTTGTTGTATTTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTG
TTTTTGTACGGGATGGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCT
GGAGGAGCACCATCACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCG
ATATGATGACGGAGGTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGAT
AGTCAAAATACGGCGGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAA
GGTTGCTGTGACGCAGCCCGTATCGATGGTTTAGCTTGAGATGGAGGAAT
TGGGGGGAAGGCAGTGTGTCTGAGAAGAGAGGGAGGGAGTGAGGGGGAGG
TGAAAGAGCCGACAAAGTACTCGCGATTGAGTGTGTAGAACCCAGCCAGG
AACGTGAGCAATGACGGCAGTAGCTGCAGCCACAAACATGTCGCAACACA
CAACACAATGGTAACCACCGCCAACAACAACAACAACAACAGAGAAAAGC
CGAAACAAATATAAAAGTAGAAGATCAGCAAAGATGTAGGGTACTTTTAA
AGACATATTTGTATTGTAATGGCAAGCAGGCCATCCTCAGGGATGCCCCC
GGGATAGGGGCCCCCGTGACTTAATGCTGTGCAGAAGAAAAGAGAAAGAA
GAAAGGAAGGGACGACAACGAGACGAAAAATACGAAGACAAGTTGCAACC
GATGAGGGTGCTAGAATGCAAAGCCTCGCCAAGAAGAATATCTGCCGCCC
ATTCAGGAGGCTGTCATTGGGATGCAGTCACTTCCGGTGAGCGGTCGAGG
AAGGGGATATAGGGCATAGAGCAACAGGGAGGGAGGGTAGACGGTATGAA
TCAAATGTGGTATGTTTCATGGAGTGGGACGACCTGTATTTGAATGAACG
TGCAAAGGGACGGGGGGGGTGACAACTGCAGTGGCAAAGCAGCTGTAATG
GCGGTGAAAGAGGTGAGGGAGGAAGGGAAAGGGAAGGGTGAGGGGAAAGA
ATTCGGAGACCTCCGACAAGGGAAAGAGAATGTCATCTGAAGA
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protein sequence of jgi.p|Nanoce1779_2|580485

>mRNA_2470-protein ID=mRNA_2470-protein|Name=jgi.p|Nanoce1779_2|580485|organism=Nannochloropsis oceanica|type=polypeptide|length=540bp
MTLASVSPRLWASAFTIGLSSLLFGYSLACLNTVITCPSKPCPKGSILTD
LDLSLEEEQLATAMTILGAMIGGLFASYPNDHWGRRKSLLVNNVFFIVGG
VLTAITSLDSILVGRFLLGLGTGVESMVAPVLLSEIASNQTRGAITSLHQ
LNITLGILISNLIGYGFVPNISGGWRYVQLFVVLPAGLQLILFWLVPESP
RWLLRADRREEARDVLSHLRIRKTGDAAAQAAGAAAVEAELVALEKELGS
TMKQPTAGWKETFSYGTAMRIGMLMMFFSAMTGINTVIFYSTTIFALAGV
ENAFLGTVLVGVLNVFITMVSGYLVDKAGRKVLLTGGTWIMLISLLLLGG
ILLAENVPALAISIVAVGSMLLYVFGFAIGIGAVQWVVVGEVVPTKIRSK
AYSIFVTSNWTANLLISLVTLSLIDTLGEAVAPAGALKAKQQQMGVALLY
FCFAGMCVLCLLFLYGMVPETKHEAKDGLEEHHHHACSEFAAGDADMMTE
VVHCSEGHGLGDSQNTAGREEGGLGEGGKVAVTQPVSMV*
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mRNA from alignment at scaffold_5:421130..423522-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2470 ID=mRNA_2470|Name=jgi.p|Nanoce1779_2|580485|organism=Nannochloropsis oceanica|type=mRNA|length=2393bp|location=Sequence derived from alignment at scaffold_5:421130..423522- (Nannochloropsis oceanica)
CAGCACTCGCAGCCATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCA
AGCGCATTTACTATTGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGC
GTGCCTCAACACGGTCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCT
CAATCCTCACCGACCTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACG
GCCATGACAATCCTTGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCC
CAATGACCACTGGGGTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTT
TCATCGTCGGCGGTGTGCTCACCGCCATCACCAGTTTAGACTCCATCCTC
GTCGGCCGGTTCTTGCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGC
CCCTGTGTTGCTTTCAGAGATTGCATCCAACCAGACCCGTGGGGCAATTA
CCAGCTTGCATCAATTGAATATCACCTTGGGAATTTTGATTTCAAACTTG
ATCGGCTACGGCTTTGTCCCAAACATCTCAGGGGGATGGAGATATGTCCA
GCTCTTCGTTGTTCTACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCG
TACCCGAGTCGCCTCGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCA
CGAGACGTCCTGAGCCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGC
GCAGGCCGCGGGGGCCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGA
AAGAGCTTGGTTCAACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACC
TTTAGCTACGGGACTGCCATGAGGATTGGTATGTTGATGATGTTCTTTAG
TGCAATGACAGGGATTAACACTGTCATTTTCTATTCGACCACGATCTTTG
CGTTGGCGGGGGTCGAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTG
CTGAATGTTTTTATCACTATGGTCTCCGGATATTTGGTTGATAAGGCGGG
AAGGAAGGTGCTATTGACCGGAGGGACGTGGATCATGCTTATTAGTTTGT
TGTTGCTGGGTGGGATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATC
TCGATCGTTGCTGTCGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAAT
TGGGATTGGGGCAGTGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCA
AGATCCGGTCGAAGGCATATTCCATTTTTGTGACGAGCAATTGGACGGCT
AATCTCCTTATTTCTCTTGTGACCTTGTCATTGATTGATACGCTGGGGGA
GGCGGTCGCCCCTGCGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGG
TGGCGTTGTTGTATTTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTG
TTTTTGTACGGGATGGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCT
GGAGGAGCACCATCACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCG
ATATGATGACGGAGGTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGAT
AGTCAAAATACGGCGGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAA
GGTTGCTGTGACGCAGCCCGTATCGATGGTTTAGCTTGAGATGGAGGAAT
TGGGGGGAAGGCAGTGTGTCTGAGAAGAGAGGGAGGGAGTGAGGGGGAGG
TGAAAGAGCCGACAAAGTACTCGCGATTGAGTGTGTAGAACCCAGCCAGG
AACGTGAGCAATGACGGCAGTAGCTGCAGCCACAAACATGTCGCAACACA
CAACACAATGGTAACCACCGCCAACAACAACAACAACAACAGAGAAAAGC
CGAAACAAATATAAAAGTAGAAGATCAGCAAAGATGTAGGGTACTTTTAA
AGACATATTTGTATTGTAATGGCAAGCAGGCCATCCTCAGGGATGCCCCC
GGGATAGGGGCCCCCGTGACTTAATGCTGTGCAGAAGAAAAGAGAAAGAA
GAAAGGAAGGGACGACAACGAGACGAAAAATACGAAGACAAGTTGCAACC
GATGAGGGTGCTAGAATGCAAAGCCTCGCCAAGAAGAATATCTGCCGCCC
ATTCAGGAGGCTGTCATTGGGATGCAGTCACTTCCGGTGAGCGGTCGAGG
AAGGGGATATAGGGCATAGAGCAACAGGGAGGGAGGGTAGACGGTATGAA
TCAAATGTGGTATGTTTCATGGAGTGGGACGACCTGTATTTGAATGAACG
TGCAAAGGGACGGGGGGGGTGACAACTGCAGTGGCAAAGCAGCTGTAATG
GCGGTGAAAGAGGTGAGGGAGGAAGGGAAAGGGAAGGGTGAGGGGAAAGA
ATTCGGAGACCTCCGACAAGGGAAAGAGAATGTCATCTGAAGA
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Coding sequence (CDS) from alignment at scaffold_5:421130..423522-

>mRNA_2470 ID=mRNA_2470|Name=jgi.p|Nanoce1779_2|580485|organism=Nannochloropsis oceanica|type=CDS|length=1620bp|location=Sequence derived from alignment at scaffold_5:421130..423522- (Nannochloropsis oceanica)
ATGACACTTGCGTCCGTATCCCCACGCTTGTGGGCAAGCGCATTTACTAT
TGGACTGTCCTCGCTCCTTTTTGGGTATAGCCTTGCGTGCCTCAACACGG
TCATCACATGCCCATCCAAGCCCTGCCCCAAGGGCTCAATCCTCACCGAC
CTCGACCTCAGCCTCGAGGAGGAACAGCTGGCCACGGCCATGACAATCCT
TGGAGCTATGATCGGGGGGCTCTTTGCCTCCTATCCCAATGACCACTGGG
GTCGCCGCAAGTCCTTGCTCGTCAACAATGTATTTTTCATCGTCGGCGGT
GTGCTCACCGCCATCACCAGTTTAGACTCCATCCTCGTCGGCCGGTTCTT
GCTCGGGCTCGGTACGGGTGTCGAATCCATGGTAGCCCCTGTGTTGCTTT
CAGAGATTGCATCCAACCAGACCCGTGGGGCAATTACCAGCTTGCATCAA
TTGAATATCACCTTGGGAATTTTGATTTCAAACTTGATCGGCTACGGCTT
TGTCCCAAACATCTCAGGGGGATGGAGATATGTCCAGCTCTTCGTTGTTC
TACCTGCTGGGTTGCAACTTATCTTGTTTTGGCTCGTACCCGAGTCGCCT
CGGTGGTTGCTGCGTGCTGACCGCCGAGAGGAGGCACGAGACGTCCTGAG
CCATTTGCGAATCCGCAAGACGGGTGATGCCGCTGCGCAGGCCGCGGGGG
CCGCGGCGGTTGAGGCAGAGCTGGTGGCGTTGGAGAAAGAGCTTGGTTCA
ACAATGAAGCAGCCGACTGCGGGTTGGAAGGAAACCTTTAGCTACGGGAC
TGCCATGAGGATTGGTATGTTGATGATGTTCTTTAGTGCAATGACAGGGA
TTAACACTGTCATTTTCTATTCGACCACGATCTTTGCGTTGGCGGGGGTC
GAGAATGCTTTCCTTGGTACAGTTTTGGTCGGTGTGCTGAATGTTTTTAT
CACTATGGTCTCCGGATATTTGGTTGATAAGGCGGGAAGGAAGGTGCTAT
TGACCGGAGGGACGTGGATCATGCTTATTAGTTTGTTGTTGCTGGGTGGG
ATTTTGTTGGCGGAGAATGTGCCTGCGCTCGCGATCTCGATCGTTGCTGT
CGGGTCGATGCTGCTGTATGTCTTTGGTTTTGCAATTGGGATTGGGGCAG
TGCAGTGGGTGGTGGTGGGTGAGGTTGTACCGACCAAGATCCGGTCGAAG
GCATATTCCATTTTTGTGACGAGCAATTGGACGGCTAATCTCCTTATTTC
TCTTGTGACCTTGTCATTGATTGATACGCTGGGGGAGGCGGTCGCCCCTG
CGGGGGCTTTGAAAGCGAAGCAGCAACAGATGGGGGTGGCGTTGTTGTAT
TTCTGTTTCGCTGGGATGTGTGTGTTGTGCTTACTGTTTTTGTACGGGAT
GGTGCCCGAGACGAAGCATGAGGCGAAGGACGGGCTGGAGGAGCACCATC
ACCATGCATGTTCTGAGTTTGCGGCGGGCGATGCCGATATGATGACGGAG
GTGGTGCATTGTTCGGAGGGGCATGGTTTAGGCGATAGTCAAAATACGGC
GGGTAGGGAGGAGGGAGGGCTAGGGGAAGGAGGGAAGGTTGCTGTGACGC
AGCCCGTATCGATGGTTTAG
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Synonyms
Publications