jgi.p|Nanoce1779_2|576690, mRNA_247 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576690
Unique Name	mRNA_247
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1912
Alignment location	scaffold_3:620833..622877 -

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Properties


Property Name	Value
TranscriptId	576776
Track	FilteredModels2
ProteinId	576690

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:620833..622877 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576690	gene_247	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576690	mRNA_247-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_247	CDS_247	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:620833..622877-
coding sequence from alignment at scaffold_3:620833..622877-

mRNA sequence

>mRNA_247 ID=mRNA_247|Name=jgi.p|Nanoce1779_2|576690|organism=Nannochloropsis oceanica|type=mRNA|length=1912bp
ACAGACGCGCACTTCTGACCGTTTTATCACGTGCTGCTGGGACATCCTAG
GCACCAAGCCGTAGAGGACGTGCAAGCAAGTCCACTTGCCGCCTTCATTT
TTGACACGACGACACCTTCATCATGGGCAACACTCCTTCCACGACGTCGC
TCTCCCCTTCTCCTTCGCGGCCCTTGACTGAAGAGTCCAGCAGAGAGGAC
AACAAGGGAGAAGAAAGAGAGGCCGACAGCCCCGTCGGTTCGCCCGTAGC
CTCCCCGCCATCCCCGCAAGGCCGTCCAGTCTCCTTGCACCTGTCTTCAC
CCATACCAACGCGTACGGCATCCAAATATGGGAACGATCTTGCCTCGTCG
AGCGCTGATCAACTAGCCCCTATTATATCGGTATTCATCAGCCCTCCTCC
TATATCTACCGGAGACGAGCCCCACGTCTTCTCGGGTCATGCCACCACCA
GCTCGCCCTCTCCCCCTCCCTCCCCTCGTTCCCAAATCTCGGGGGCCAGC
AGCGTTTCGTCGGTTGGGAGCAGAATCGCCAGCTTCTTTTGGAATGCGCA
GGAGCAGTATTACACCGGCAAGGTAGCCAGGCGGCAGAGCCAGCTGGGGA
GCGCGGGCCGCCTCGGTCGCCCCTGCTGCTTCACCCTTCAATCCATCACC
CTCGAAGGCAACTTCCCCGCCACAGCCCAAGTCCAAGCCGAAGTAATCGT
CCTCTTCGATAAGGCACACCCTTACCTCAACTCCATCTCGGAGCTCCCCC
CGCTTCGTACCCTTCCTCGCCCCGCCCTCCGTCGCGGGCAAGTGAACATT
GGGGGGAGAACTGACGTCATCCTCCTTCCGTCCGTTACAAGCTCTTCCAT
CCTGAACATCACTGTCTTGCTCGATGGCACTCCCGTTGGCAACGTCCGCT
ACCCCTTATCTGAAATCACCGCGACTTTACGGCCGACAGAATTGCAGCTG
ATCTCGGCAGGAGCTGATGGGGAAAATCCTACTCGTTCTCGCTCGCCCTC
TTCCCCCTGCACGTCCCCATTGCGTCGTCATTTGTTGTCATCGTCTCCAA
CTAGGTCTTCTCGTTATGGGGGAAACGACGGCTCCAAGTTAATCGGATCT
GGGTTGGAAAGCCTGCGCGTGAGGGCTCCATCGCCATCTCTATCTCAACC
ACTGCAGACATCCTCTCGGCAAGCAGCAATGGGCGGGGGGAGAGGGGAAG
CACGGCCAGTAGGGGAAGGGCCACCGACACTCGATGCTGTATGGGGGGAG
GTAGTATTTTACGACAATCGAAGGTATAAACTATACGCGGAGGGAGTTCG
ATGTTGGCCTGAATCTGAGAATTTTAGGTCCTACTCACTTTTATAAGAAT
TTTATGAAGAGGGCGATTCACTCTTTTTTCTCTTATACGCACACCCTCAC
CCCCATACACATACACATCCTGCAGCTCGGGCGTTGGCTGGGTCGGCTTG
ATAGAGGAAGGCGGCGAGCCTATAAACGAGCAGAGGCTCCTGGTCGTGAC
CCCGCATTCATTTTGTTTGATGAAGTCGCCGCATTGCGTATTGGTACGTC
TAGCTTGCTCTTTTTTAATTCTCCTTCACCCTTTCTTTCTTTCTTCTAGT
CTCCTTCTGTTTTCTACGCTCGTGTGTGTTTTGAAGCATGCTTTATCAAT
CAGGAAACCCCCTTACTATTTCCTAAACCTTTTTTTGCCATCTGTCACAC
AAACGCACAGGGCCAAGAGGGATACAGCATGACACAGGTCCGACACGTGG
AGCCCAAAGGCCTGCCCCATATACCTGAAGAGGCAGACGGCCTGGACCGC
AACACGAGAAATGACACCACCACAAATACCTCCCCCACGACCACCAGCAG
CAATAGTAGCAGTGACAATCGATCACTAGGAAAAGAGCGTGGGCGAGGAG
GGGGTGCAATGG

protein sequence of jgi.p|Nanoce1779_2|576690

>mRNA_247-protein ID=mRNA_247-protein|Name=jgi.p|Nanoce1779_2|576690|organism=Nannochloropsis oceanica|type=polypeptide|length=408bp
MGNTPSTTSLSPSPSRPLTEESSREDNKGEEREADSPVGSPVASPPSPQG
RPVSLHLSSPIPTRTASKYGNDLASSSADQLAPIISVFISPPPISTGDEP
HVFSGHATTSSPSPPPSPRSQISGASSVSSVGSRIASFFWNAQEQYYTGK
VARRQSQLGSAGRLGRPCCFTLQSITLEGNFPATAQVQAEVIVLFDKAHP
YLNSISELPPLRTLPRPALRRGQVNIGGRTDVILLPSVTSSSILNITVLL
DGTPVGNVRYPLSEITATLRPTELQLISAGADGENPTRSRSPSSPCTSPL
RRHLLSSSPTRSSRYGGNDGSKLIGSGLESLRVRAPSPSLSQPLQTSSRQ
AAMGGGRGEARPVGEGPPTLDAVWGEVVFYDNRRYKLYAEGVRCWPESEN
FRSYSLL*

mRNA from alignment at scaffold_3:620833..622877-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_247 ID=mRNA_247|Name=jgi.p|Nanoce1779_2|576690|organism=Nannochloropsis oceanica|type=mRNA|length=2045bp|location=Sequence derived from alignment at scaffold_3:620833..622877- (Nannochloropsis oceanica)
ACAGACGCGCACTTCTGACCGTTTTATCACGTGCTGCTGGGACATCCTAG
GCACCAAGCCGTAGAGGACGTGCAAGCAAGTCCACTTGCCGCCTTCATTT
TTGACACGACGACACCTTCATCATGGGCAACACTCCTTCCACGACGTCGC
TCTCCCCTTCTCCTTCGCGGCCCTTGACTGAAGAGTCCAGCAGAGAGGAC
AACAAGGGAGAAGAAAGAGAGGCCGACAGCCCCGTCGGTTCGCCCGTAGC
CTCCCCGCCATCCCCGCAAGGCCGTCCAGTCTCCTTGCACCTGTCTTCAC
CCATACCAACGCGTACGGCATCCAAATATGGGAACGATCTTGCCTCGTCG
AGCGCTGATCAACTAGCCCCTATTATATCGGTATTCATCAGCCCTCCTCC
TATATCTACCGGAGACGAGCCCCACGTCTTCTCGGGTCATGCCACCACCA
GCTCGCCCTCTCCCCCTCCCTCCCCTCGTTCCCAAATCTCGGGGGCCAGC
AGCGTTTCGTCGGTTGGGAGCAGAATCGCCAGCTTCTTTTGGAATGCGCA
GGAGCAGTATTACACCGGCAAGGTAGCCAGGCGGCAGAGCCAGCTGGGGA
GCGCGGGGTGAGTACATGAGAATGCACGTGGGTGCTTGGAGAGTGGGTGG
GGTGGGTAAATCTGTGCAGCTTATTGAGGCCTTTGAATGGAGGAGACTTA
CATCCCTTTTCCCTACACTCCTCCAACCACCATTGAATAGCCGCCTCGGT
CGCCCCTGCTGCTTCACCCTTCAATCCATCACCCTCGAAGGCAACTTCCC
CGCCACAGCCCAAGTCCAAGCCGAAGTAATCGTCCTCTTCGATAAGGCAC
ACCCTTACCTCAACTCCATCTCGGAGCTCCCCCCGCTTCGTACCCTTCCT
CGCCCCGCCCTCCGTCGCGGGCAAGTGAACATTGGGGGGAGAACTGACGT
CATCCTCCTTCCGTCCGTTACAAGCTCTTCCATCCTGAACATCACTGTCT
TGCTCGATGGCACTCCCGTTGGCAACGTCCGCTACCCCTTATCTGAAATC
ACCGCGACTTTACGGCCGACAGAATTGCAGCTGATCTCGGCAGGAGCTGA
TGGGGAAAATCCTACTCGTTCTCGCTCGCCCTCTTCCCCCTGCACGTCCC
CATTGCGTCGTCATTTGTTGTCATCGTCTCCAACTAGGTCTTCTCGTTAT
GGGGGAAACGACGGCTCCAAGTTAATCGGATCTGGGTTGGAAAGCCTGCG
CGTGAGGGCTCCATCGCCATCTCTATCTCAACCACTGCAGACATCCTCTC
GGCAAGCAGCAATGGGCGGGGGGAGAGGGGAAGCACGGCCAGTAGGGGAA
GGGCCACCGACACTCGATGCTGTATGGGGGGAGGTAGTATTTTACGACAA
TCGAAGGTATAAACTATACGCGGAGGGAGTTCGATGTTGGCCTGAATCTG
AGAATTTTAGGTCCTACTCACTTTTATAAGAATTTTATGAAGAGGGCGAT
TCACTCTTTTTTCTCTTATACGCACACCCTCACCCCCATACACATACACA
TCCTGCAGCTCGGGCGTTGGCTGGGTCGGCTTGATAGAGGAAGGCGGCGA
GCCTATAAACGAGCAGAGGCTCCTGGTCGTGACCCCGCATTCATTTTGTT
TGATGAAGTCGCCGCATTGCGTATTGGTACGTCTAGCTTGCTCTTTTTTA
ATTCTCCTTCACCCTTTCTTTCTTTCTTCTAGTCTCCTTCTGTTTTCTAC
GCTCGTGTGTGTTTTGAAGCATGCTTTATCAATCAGGAAACCCCCTTACT
ATTTCCTAAACCTTTTTTTGCCATCTGTCACACAAACGCACAGGGCCAAG
AGGGATACAGCATGACACAGGTCCGACACGTGGAGCCCAAAGGCCTGCCC
CATATACCTGAAGAGGCAGACGGCCTGGACCGCAACACGAGAAATGACAC
CACCACAAATACCTCCCCCACGACCACCAGCAGCAATAGTAGCAGTGACA
ATCGATCACTAGGAAAAGAGCGTGGGCGAGGAGGGGGTGCAATGG

Coding sequence (CDS) from alignment at scaffold_3:620833..622877-

>mRNA_247 ID=mRNA_247|Name=jgi.p|Nanoce1779_2|576690|organism=Nannochloropsis oceanica|type=CDS|length=2448bp|location=Sequence derived from alignment at scaffold_3:620833..622877- (Nannochloropsis oceanica)
CCGCCTCGGTCGCCCCTGCTGCTTCACCCTTCAATCCATCACCCTCGAAG
GCAACTTCCCCGCCACAGCCCAAGTCCAAGCCGAAGTAATCGTCCTCTTC
GATAAGGCACACCCTTACCTCAACTCCATCTCGGAGCTCCCCCCGCTTCG
TACCCTTCCTCGCCCCGCCCTCCGTCGCGGGCAAGTGAACATTGGGGGGA
GAACTGACGTCATCCTCCTTCCGTCCGTTACAAGCTCTTCCATCCTGAAC
ATCACTGTCTTGCTCGATGGCACTCCCGTTGGCAACGTCCGCTACCCCTT
ATCTGAAATCACCGCGACTTTACGGCCGACAGAATTGCAGCTGATCTCGG
CAGGAGCTGATGGGGAAAATCCTACTCGTTCTCGCTCGCCCTCTTCCCCC
TGCACGTCCCCATTGCGTCGTCATTTGTTGTCATCGTCTCCAACTAGGTC
TTCTCGTTATGGGGGAAACGACGGCTCCAAGTTAATCGGATCTGGGTTGG
AAAGCCTGCGCGTGAGGGCTCCATCGCCATCTCTATCTCAACCACTGCAG
ACATCCTCTCGGCAAGCAGCAATGGGCGGGGGGAGAGGGGAAGCACGGCC
AGTAGGGGAAGGGCCACCGACACTCGATGCTGTATGGGGGGAGGTAGTAT
TTTACGACAATCGAAGGTATAAACTATACGCGGAGGGAGTTCGATGTTGG
CCTGAATCTGAGAATTTTAGGTCCTACTCACTTTTATAAATGGGCAACAC
TCCTTCCACGACGTCGCTCTCCCCTTCTCCTTCGCGGCCCTTGACTGAAG
AGTCCAGCAGAGAGGACAACAAGGGAGAAGAAAGAGAGGCCGACAGCCCC
GTCGGTTCGCCCGTAGCCTCCCCGCCATCCCCGCAAGGCCGTCCAGTCTC
CTTGCACCTGTCTTCACCCATACCAACGCGTACGGCATCCAAATATGGGA
ACGATCTTGCCTCGTCGAGCGCTGATCAACTAGCCCCTATTATATCGGTA
TTCATCAGCCCTCCTCCTATATCTACCGGAGACGAGCCCCACGTCTTCTC
GGGTCATGCCACCACCAGCTCGCCCTCTCCCCCTCCCTCCCCTCGTTCCC
AAATCTCGGGGGCCAGCAGCGTTTCGTCGGTTGGGAGCAGAATCGCCAGC
TTCTTTTGGAATGCGCAGGAGCAGTATTACACCGGCAAGGTAGCCAGGCG
GCAGAGCCAGCTGGGGAGCGCGGGCCGCCTCGGTCGCCCCTGCTGCTTCA
CCCTTCAATCCATCACCCTCGAAGGCAACTTCCCCGCCACAGCCCAAGTC
CAAGCCGAAGTAATCGTCCTCTTCGATAAGGCACACCCTTACCTCAACTC
CATCTCGGAGCTCCCCCCGCTTCGTACCCTTCCTCGCCCCGCCCTCCGTC
GCGGGCAAGTGAACATTGGGGGGAGAACTGACGTCATCCTCCTTCCGTCC
GTTACAAGCTCTTCCATCCTGAACATCACTGTCTTGCTCGATGGCACTCC
CGTTGGCAACGTCCGCTACCCCTTATCTGAAATCACCGCGACTTTACGGC
CGACAGAATTGCAGCTGATCTCGGCAGGAGCTGATGGGGAAAATCCTACT
CGTTCTCGCTCGCCCTCTTCCCCCTGCACGTCCCCATTGCGTCGTCATTT
GTTGTCATCGTCTCCAACTAGGTCTTCTCGTTATGGGGGAAACGACGGCT
CCAAGTTAATCGGATCTGGGTTGGAAAGCCTGCGCGTGAGGGCTCCATCG
CCATCTCTATCTCAACCACTGCAGACATCCTCTCGGCAAGCAGCAATGGG
CGGGGGGAGAGGGGAAGCACGGCCAGTAGGGGAAGGGCCACCGACACTCG
ATGCTGTATGGGGGGAGGTAGTATTTTACGACAATCGAAGGTATAAACTA
TACGCGGAGGGAGTTCGATGTTGGCCTGAATCTGAGAATTTTAGGTCCTA
CTCACTTTTATAAATGGGCAACACTCCTTCCACGACGTCGCTCTCCCCTT
CTCCTTCGCGGCCCTTGACTGAAGAGTCCAGCAGAGAGGACAACAAGGGA
GAAGAAAGAGAGGCCGACAGCCCCGTCGGTTCGCCCGTAGCCTCCCCGCC
ATCCCCGCAAGGCCGTCCAGTCTCCTTGCACCTGTCTTCACCCATACCAA
CGCGTACGGCATCCAAATATGGGAACGATCTTGCCTCGTCGAGCGCTGAT
CAACTAGCCCCTATTATATCGGTATTCATCAGCCCTCCTCCTATATCTAC
CGGAGACGAGCCCCACGTCTTCTCGGGTCATGCCACCACCAGCTCGCCCT
CTCCCCCTCCCTCCCCTCGTTCCCAAATCTCGGGGGCCAGCAGCGTTTCG
TCGGTTGGGAGCAGAATCGCCAGCTTCTTTTGGAATGCGCAGGAGCAGTA
TTACACCGGCAAGGTAGCCAGGCGGCAGAGCCAGCTGGGGAGCGCGGG

Synonyms

Publications