jgi.p|Nanoce1779_2|580483, mRNA_2469 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580483
Unique Name	mRNA_2469
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1536
Alignment location	scaffold_5:419012..421102 +

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Properties


Property Name	Value
TranscriptId	580569
Track	FilteredModels2
ProteinId	580483

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:419012..421102 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580483	gene_2469	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580483	mRNA_2469-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2469	CDS_2469	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:419012..421102+
coding sequence from alignment at scaffold_5:419012..421102+

mRNA sequence

>mRNA_2469 ID=mRNA_2469|Name=jgi.p|Nanoce1779_2|580483|organism=Nannochloropsis oceanica|type=mRNA|length=1536bp
CCCATATAAAATATTTTCGGTAAAGACCCTTTTTCACCATGGCCGCTGTC
ACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCGGCTTACTTTGGA
CTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGCTGGCGGAAGACT
GGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCCCGGCTCACGGAA
CGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATTTAAGCAGCACTT
GCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGCCTCAAGCGTTGG
CACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCTTACGTCAACCTG
GCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCAAGAGGATTGCGG
GGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGGTAGACCGGCAGA
AAATAATCGTTGATACCATGTTTCCCATGGATCGGGTACCCGCTGAAGGG
TTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCATTTGTCGAGCGA
GATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACGTGGCCGACCAGC
AATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAGTGGCGGCCTCGT
GATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGAGACCACAGATGG
TGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAAGCGGCAGTAACA
ACAGCAACGACAACAATAACAACAACAAGAACAAGATTAATAGCAACGCA
GAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTGGCCTGGTCTCTC
GAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCGCTGCCCTGGCCC
GCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGACCAGGGACGGTTC
CTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTTGTATTGGGAAGT
GATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACTGTAACATCGCCA
AGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCCGAGCCGCACACC
TTGCTCGCGCAATGCTATTTGATCAAGGGCGATTTCCCAGCAGCCTTGAC
AGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGGGTACGAATTGGG
ATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACTCGAGTCTTGCTT
CAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTCGTGGGGGGTGAT
TAATTTGGGCTTGGTACGGTGAGGAGGGAGCAAGAAATGGGGAGGACGAT
GATAGCTTGGACATGTGGTTGTTGTAGGTATGGAGGGGGAAGAGAGTTTA
CCCGTTCCAAGATTTGGAGAGGATAAGAGAACAACAGTAAGGCTTTCGAA
ATCAAAGAAAATGAGATGTACTTGGACCCCGATTAGAATGGTGACAATGT
CAATAACAAAGGAAATATATGAATACGGTGGAAGCA

protein sequence of jgi.p|Nanoce1779_2|580483

>mRNA_2469-protein ID=mRNA_2469-protein|Name=jgi.p|Nanoce1779_2|580483|organism=Nannochloropsis oceanica|type=polypeptide|length=428bp
MAAVTTAAAAAATAAARLTLDSSSRLTGVAKALLAEDWARVDKRVPHLLA
RLTERGAHQCWHKHGTFKQHLLGVWKILALWEQPQALARCGLFHSAYSNS
YVNLAIFKAGVDRGLVQEDCGVEAEELIYKFCVVDRQKIIVDTMFPMDRV
PAEGLTVQHIHTGEPVHLSSEMLGQLLVMTMADVADQQYGWQDDLFGDAQ
WRPRDAFSSATSKSYKETTDGVVESTSNNSYNKSGSNNSNDNNNNNKNKI
NSNAEEQEAVMHPYTLWPGLSKPGLWMYFVSQLAALARTCPMPVRPPVLD
QGRFLLDRTAERQARDLYWEVISEDPRDKSKVDCNIAKLTHALVLNPYLA
EPHTLLAQCYLIKGDFPAALTAADKAVDLFLQWGTNWDKRVSFEAWMAWT
RVLLQHAENRTPWHENSWGVINLGLVR*

mRNA from alignment at scaffold_5:419012..421102+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2469 ID=mRNA_2469|Name=jgi.p|Nanoce1779_2|580483|organism=Nannochloropsis oceanica|type=mRNA|length=2091bp|location=Sequence derived from alignment at scaffold_5:419012..421102+ (Nannochloropsis oceanica)
CCCATATAAAATATTTTCGGTAAGCATTCCTCAACACCACTATTCCAAAA
TTTTAAAAGGCGTATTGTTTCTTAATCCGTCTTAATTTCACGCAATTTTG
CTGTCAAGCTGAGAAGAACGGGGCACTGGAGTGGATGGTATAAATTTGAT
AGAGGTCTTCAGACGTGGTCTTTCTGAGTGCTTGAAGGGAAAGAAATGAT
GACTTCCTACCTCCTATCACAAAATTTGCTCATTGCTTGCCTTCACGCCA
CCAGTCTCTGGTGATTGCCTCAAGATATCGTGGCATCCTGTGTGATTGCC
ATGATGGGACTTGTTTGTGTGCGCTCAAGGAACAGACAATGCCAAGATTT
GTTTTTTGGCAGTCCCCTTCCCTGATACTATATCCGGACGGAAAGACGCA
ATTCGGTTTCGCATTAAGTTATGCATTCCTCATCTTGACAGGCATCTTAC
TCTTGGCAACCTACATACCACACCACATTGACGCATTGACGCTGTGCTAA
AGCCGTCGTGTTTCCGTGCTTCACTAACCGGCCATTCCTTCTTCAACTCG
CTCATCCTCAACGACCATCCCCTCCAGTAGACCCTTTTTCACCATGGCCG
CTGTCACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCGGCTTACT
TTGGACTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGCTGGCGGA
AGACTGGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCCCGGCTCA
CGGAACGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATTTAAGCAG
CACTTGCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGCCTCAAGC
GTTGGCACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCTTACGTCA
ACCTGGCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCAAGAGGAT
TGCGGGGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGGTAGACCG
GCAGAAAATAATCGTTGATACCATGTTTCCCATGGATCGGGTACCCGCTG
AAGGGTTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCATTTGTCG
AGCGAGATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACGTGGCCGA
CCAGCAATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAGTGGCGGC
CTCGTGATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGAGACCACA
GATGGTGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAAGCGGCAG
TAACAACAGCAACGACAACAATAACAACAACAAGAACAAGATTAATAGCA
ACGCAGAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTGGCCTGGT
CTCTCGAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCGCTGCCCT
GGCCCGCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGACCAGGGAC
GGTTCCTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTTGTATTGG
GAAGTGATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACTGTAACAT
CGCCAAGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCCGAGCCGC
ACACCTTGCTCGCGCAATGCTATTTGATCAAGGGCGATTTCCCAGCAGCC
TTGACAGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGGGTACGAA
TTGGGATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACTCGAGTCT
TGCTTCAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTCGTGGGGG
GTGATTAATTTGGGCTTGGTACGGTGAGGAGGGAGCAAGAAATGGGGAGG
ACGATGATAGCTTGGACATGTGGTTGTTGTAGGTATGGAGGGGGAAGAGA
GTTTACCCGTTCCAAGATTTGGAGAGGATAAGAGAACAACAGTAAGGCTT
TCGAAATCAAAGAAAATGAGATGTACTTGGACCCCGATTAGAATGGTGAC
AATGTCAATAACAAAGGAAATATATGAATACGGTGGAAGCA

Coding sequence (CDS) from alignment at scaffold_5:419012..421102+

>mRNA_2469 ID=mRNA_2469|Name=jgi.p|Nanoce1779_2|580483|organism=Nannochloropsis oceanica|type=CDS|length=1284bp|location=Sequence derived from alignment at scaffold_5:419012..421102+ (Nannochloropsis oceanica)
ATGGCCGCTGTCACGACCGCAGCCGCTGCAGCAGCAACTGCAGCAGCTCG
GCTTACTTTGGACTCCTCGTCGCGCCTCACTGGGGTGGCCAAGGCATTGC
TGGCGGAAGACTGGGCGCGGGTCGATAAGCGGGTGCCCCATCTCCTGGCC
CGGCTCACGGAACGTGGCGCCCACCAATGCTGGCATAAGCACGGGACATT
TAAGCAGCACTTGCTGGGCGTCTGGAAGATCTTGGCGCTATGGGAGCAGC
CTCAAGCGTTGGCACGCTGTGGCCTTTTTCATTCTGCCTATTCCAACTCT
TACGTCAACCTGGCCATCTTCAAAGCCGGCGTTGATAGGGGCTTGGTGCA
AGAGGATTGCGGGGTCGAAGCCGAGGAGCTCATATACAAGTTCTGCGTGG
TAGACCGGCAGAAAATAATCGTTGATACCATGTTTCCCATGGATCGGGTA
CCCGCTGAAGGGTTAACAGTGCAACACATTCATACGGGGGAGCCTGTGCA
TTTGTCGAGCGAGATGCTAGGGCAGTTATTGGTTATGACCATGGCAGACG
TGGCCGACCAGCAATACGGGTGGCAAGACGACTTGTTTGGTGATGCACAG
TGGCGGCCTCGTGATGCCTTCAGCAGCGCGACCAGTAAGAGCTACAAGGA
GACCACAGATGGTGTGGTAGAAAGCACTAGCAACAATAGCTACAACAAAA
GCGGCAGTAACAACAGCAACGACAACAATAACAACAACAAGAACAAGATT
AATAGCAACGCAGAGGAGCAAGAAGCTGTCATGCATCCCTACACTCTCTG
GCCTGGTCTCTCGAAGCCCGGTTTATGGATGTACTTCGTCAGCCAGCTCG
CTGCCCTGGCCCGCACGTGTCCCATGCCTGTCCGTCCCCCCGTCTTGGAC
CAGGGACGGTTCCTCCTCGATCGTACCGCGGAACGTCAAGCGCGTGATTT
GTATTGGGAAGTGATTTCGGAAGACCCGCGGGATAAGAGTAAAGTGGACT
GTAACATCGCCAAGCTGACACATGCCCTAGTCCTCAATCCTTATCTAGCC
GAGCCGCACACCTTGCTCGCGCAATGCTATTTGATCAAGGGCGATTTCCC
AGCAGCCTTGACAGCAGCTGATAAGGCAGTTGACTTGTTTCTGCAATGGG
GTACGAATTGGGATAAGCGCGTGTCTTTTGAGGCTTGGATGGCTTGGACT
CGAGTCTTGCTTCAGCATGCAGAGAATCGTACGCCGTGGCATGAAAACTC
GTGGGGGGTGATTAATTTGGGCTTGGTACGGTGA

Synonyms

Publications