jgi.p|Nanoce1779_2|580478, mRNA_2467 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580478
Unique Name	mRNA_2467
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1123
Alignment location	scaffold_5:413363..414485 +

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Properties


Property Name	Value
TranscriptId	580564
Track	FilteredModels2
ProteinId	580478

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:413363..414485 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580478	gene_2467	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580478	mRNA_2467-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2467	CDS_2467	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:413363..414485+
coding sequence from alignment at scaffold_5:413363..414485+

mRNA sequence

>mRNA_2467 ID=mRNA_2467|Name=jgi.p|Nanoce1779_2|580478|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp
CGGGGCTAAAACGTGACCGTTTCCGCAATCTTGGCCCACATGAAGTAAGC
CCTAAAACCACAACAATCTGGAATAATATGCCGACTCACCAAACCAATGC
TAATGTCCGTAATTTACTTCATTCTTTTCGCTGGTATTGCATGCAAAAAT
GGACATCACGAGAAGAGGCGATGCCCAAGAGAGAGCATTGCATGCCCACC
TCCCCATCCACCATCCGCCGACTATGTTCATGTCTTTCCACACCTGCCCT
CGGCTTCACGCACGAGATATTGGTATATGGTGGTATTTTGCCATCTCGGA
GAGCTGTGTCCCCACTTTGTGCACCAAGGTGAGCTCACTGCGGTGCACCA
CTGCGTGCTGGAGAACCGCAACATTTTCCTCGCTCTCGTGGTCGAAGGAT
GGCTGGATGTATGGGGTGCCAGCGGCTGGCCAATGAGTACGACTGCTGCA
AGAACACGCCCAAGGACGTCTTCTATATGTTTCGGGAGGTGGCCTCCTGA
CTCGTAATAGGACCACTGCACCCAGCGTGTCGGCGTTGGGAGTCTCATTT
CAAGACGGGCGGACCAGGTTTGTGCGTGGAGATTGACGAGGCGTGTCTAG
CAAAGCGTGAGTAAGTATAATCGAGGCCGTCGAGGAGCCGCCCAGCCTCG
ACGGCATAGGCCGTACTTGCGTTTTCCGAACATCACCTCATCTTCCTCCA
CGCACAAACCCGGACCGTGGTGTCTTGAAGTGAGACTCCTCACACTGGCA
CGCTGGGTGCAGCGATCCGATTACGTCTCACGAGGCCACCTGCCGGAACA
CAGTAAGACGTCCGTGGTCGCATTCTTACGTCAGGCATCATCGGTCAACC
GCTTCCATTCAACACACCGGCCATCTATTCAACCATCAAAGCGAGGAAGA
TGCCCTGAAAGTCGCGGTTATCCAGCACGCTGTGGTGCACCTGTCTTGAA
TTTACCTCTTCCTCCCTTAAAACCGAGCCTCCTGACCCCTTCTGTTGAAA
ACCAAATGCACACGATTTGTAAGGAATAAAGAGCAAGGAAGGAAAGGACC
CGCGGTGGCTAATGCCTTCATGTCGCGTGATATTTAACCTTCGTTCACCA
ATTACTTCGTTTATGTCCGCGGA

protein sequence of jgi.p|Nanoce1779_2|580478

>mRNA_2467-protein ID=mRNA_2467-protein|Name=jgi.p|Nanoce1779_2|580478|organism=Nannochloropsis oceanica|type=polypeptide|length=137bp
MLMSVIYFILFAGIACKNGHHEKRRCPRESIACPPPHPPSADYVHVFPHL
PSASRTRYWYMVVFCHLGELCPHFVHQGELTAVHHCVLENRNIFLALVVE
GWLDVWGASGWPMSTTAARTRPRTSSICFGRWPPDS*

mRNA from alignment at scaffold_5:413363..414485+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2467 ID=mRNA_2467|Name=jgi.p|Nanoce1779_2|580478|organism=Nannochloropsis oceanica|type=mRNA|length=1123bp|location=Sequence derived from alignment at scaffold_5:413363..414485+ (Nannochloropsis oceanica)
CGGGGCTAAAACGTGACCGTTTCCGCAATCTTGGCCCACATGAAGTAAGC
CCTAAAACCACAACAATCTGGAATAATATGCCGACTCACCAAACCAATGC
TAATGTCCGTAATTTACTTCATTCTTTTCGCTGGTATTGCATGCAAAAAT
GGACATCACGAGAAGAGGCGATGCCCAAGAGAGAGCATTGCATGCCCACC
TCCCCATCCACCATCCGCCGACTATGTTCATGTCTTTCCACACCTGCCCT
CGGCTTCACGCACGAGATATTGGTATATGGTGGTATTTTGCCATCTCGGA
GAGCTGTGTCCCCACTTTGTGCACCAAGGTGAGCTCACTGCGGTGCACCA
CTGCGTGCTGGAGAACCGCAACATTTTCCTCGCTCTCGTGGTCGAAGGAT
GGCTGGATGTATGGGGTGCCAGCGGCTGGCCAATGAGTACGACTGCTGCA
AGAACACGCCCAAGGACGTCTTCTATATGTTTCGGGAGGTGGCCTCCTGA
CTCGTAATAGGACCACTGCACCCAGCGTGTCGGCGTTGGGAGTCTCATTT
CAAGACGGGCGGACCAGGTTTGTGCGTGGAGATTGACGAGGCGTGTCTAG
CAAAGCGTGAGTAAGTATAATCGAGGCCGTCGAGGAGCCGCCCAGCCTCG
ACGGCATAGGCCGTACTTGCGTTTTCCGAACATCACCTCATCTTCCTCCA
CGCACAAACCCGGACCGTGGTGTCTTGAAGTGAGACTCCTCACACTGGCA
CGCTGGGTGCAGCGATCCGATTACGTCTCACGAGGCCACCTGCCGGAACA
CAGTAAGACGTCCGTGGTCGCATTCTTACGTCAGGCATCATCGGTCAACC
GCTTCCATTCAACACACCGGCCATCTATTCAACCATCAAAGCGAGGAAGA
TGCCCTGAAAGTCGCGGTTATCCAGCACGCTGTGGTGCACCTGTCTTGAA
TTTACCTCTTCCTCCCTTAAAACCGAGCCTCCTGACCCCTTCTGTTGAAA
ACCAAATGCACACGATTTGTAAGGAATAAAGAGCAAGGAAGGAAAGGACC
CGCGGTGGCTAATGCCTTCATGTCGCGTGATATTTAACCTTCGTTCACCA
ATTACTTCGTTTATGTCCGCGGA

Coding sequence (CDS) from alignment at scaffold_5:413363..414485+

>mRNA_2467 ID=mRNA_2467|Name=jgi.p|Nanoce1779_2|580478|organism=Nannochloropsis oceanica|type=CDS|length=411bp|location=Sequence derived from alignment at scaffold_5:413363..414485+ (Nannochloropsis oceanica)
ATGCTAATGTCCGTAATTTACTTCATTCTTTTCGCTGGTATTGCATGCAA
AAATGGACATCACGAGAAGAGGCGATGCCCAAGAGAGAGCATTGCATGCC
CACCTCCCCATCCACCATCCGCCGACTATGTTCATGTCTTTCCACACCTG
CCCTCGGCTTCACGCACGAGATATTGGTATATGGTGGTATTTTGCCATCT
CGGAGAGCTGTGTCCCCACTTTGTGCACCAAGGTGAGCTCACTGCGGTGC
ACCACTGCGTGCTGGAGAACCGCAACATTTTCCTCGCTCTCGTGGTCGAA
GGATGGCTGGATGTATGGGGTGCCAGCGGCTGGCCAATGAGTACGACTGC
TGCAAGAACACGCCCAAGGACGTCTTCTATATGTTTCGGGAGGTGGCCTC
CTGACTCGTAA

Synonyms

Publications