jgi.p|Nanoce1779_2|580472, mRNA_2465 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580472
Unique NamemRNA_2465
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1366
Alignment locationscaffold_5:407476..408841 -

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Properties
Property NameValue
TranscriptId580558
TrackFilteredModels2
ProteinId580472
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:407476..408841 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580472gene_2465Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580472mRNA_2465-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2465CDS_2465Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2465 ID=mRNA_2465|Name=jgi.p|Nanoce1779_2|580472|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp
AGGAGGGCCGCCAACTGGTCCTAGTCAGTATCGAAAGTGGCCGGCACACA
AGCGGCCACCAAAAATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTT
CTTTCCTTTATGGGACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTA
CTTGACCATGCATGGAGGCGAAGATGATGGAGATGTAAATCAAGTCTACA
TCTACTCGCGAGATGGATGCCCTCTCGGCGAAGCACTAGAGGAATACACG
GAGCTCAACGAGTTACGGGGGATGACCTTGTGGGGGGATTCCATCCTACT
AGCGAATGCTAATCGGCTAGATTCATTTATCGTGCAATACAAGGGGGCCT
GCCGTAGCATGGAGAGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGA
ACGCCCGGGATCGACCATCCTTACGGCGTTACTACTGATCGAATACGTTA
CCTGTATGTGTCAACGCAAGGTAGCAATAGCGTTTATCGATACTATCTTA
CCACGGGAGAAGCAGCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTA
CAAGATGATGACTACCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGA
TGGGACGCGCAATGTGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTG
CGAATAAAGACGAAGGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTG
GGAAGATTAAATGCAGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCG
GGATTCAATTTTTGTTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGG
ATCCGTGGACGTTTGAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGC
CACCCAGCGGGATTGGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCA
GGATGAAAATTCGATAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGG
TAGTGGTTGACAAGCTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCAT
ACCAATCGGTGTTAAGTATAAAAGCAACTGTTTCGAAGAACAGGAGGGTG
AGGAAAAGAAGGAGAGGTGTGATACGTTGGAGGGATTTGAATGAATTGTG
TATGGTAGGATCCAGCATCGGCATGACTGGAAAAAAGGACTGTGTCATGG
CACAGTACATTGAAATGCTACGAAACAGCACTGAAATTTACAGACCGTCG
AGTCATTGAAGTGAGGAGCAGGACTGACAGGAATGATACTTCGATGAGAA
AATGAAAACAATATGAAGGACGAGCCACCTGTAACATTATCATTCCATTT
AATTAAATAAGCGTGCTTTTTTCATTCATTTATTCCGCCCTCCTTCAGGT
TGATTGGTTGCATTTC
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protein sequence of jgi.p|Nanoce1779_2|580472

>mRNA_2465-protein ID=mRNA_2465-protein|Name=jgi.p|Nanoce1779_2|580472|organism=Nannochloropsis oceanica|type=polypeptide|length=317bp
MRAPSWLLAGVLLSFMGQTRACLGPPYLYLTMHGGEDDGDVNQVYIYSRD
GCPLGEALEEYTELNELRGMTLWGDSILLANANRLDSFIVQYKGACRSME
SMKEMRVIVPFGTPGIDHPYGVTTDRIRYLYVSTQGSNSVYRYYLTTGEA
APVSPALASEGVQDDDYPGLFAQFDQDKDGTRNVAWHPDQRLLFVANKDE
GVVVLDEDGYELGRLNADKPISVSFCDGRDSIFVSSKGDDSVSEWDPWTF
ELVGKWTDRKLSHPAGLVCHEGSLFVVSQDENSIVEVDLESGKMWVVVDK
LDDKGEQLILSHTNRC*
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mRNA from alignment at scaffold_5:407476..408841-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2465 ID=mRNA_2465|Name=jgi.p|Nanoce1779_2|580472|organism=Nannochloropsis oceanica|type=mRNA|length=1366bp|location=Sequence derived from alignment at scaffold_5:407476..408841- (Nannochloropsis oceanica)
AGGAGGGCCGCCAACTGGTCCTAGTCAGTATCGAAAGTGGCCGGCACACA
AGCGGCCACCAAAAATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTT
CTTTCCTTTATGGGACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTA
CTTGACCATGCATGGAGGCGAAGATGATGGAGATGTAAATCAAGTCTACA
TCTACTCGCGAGATGGATGCCCTCTCGGCGAAGCACTAGAGGAATACACG
GAGCTCAACGAGTTACGGGGGATGACCTTGTGGGGGGATTCCATCCTACT
AGCGAATGCTAATCGGCTAGATTCATTTATCGTGCAATACAAGGGGGCCT
GCCGTAGCATGGAGAGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGA
ACGCCCGGGATCGACCATCCTTACGGCGTTACTACTGATCGAATACGTTA
CCTGTATGTGTCAACGCAAGGTAGCAATAGCGTTTATCGATACTATCTTA
CCACGGGAGAAGCAGCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTA
CAAGATGATGACTACCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGA
TGGGACGCGCAATGTGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTG
CGAATAAAGACGAAGGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTG
GGAAGATTAAATGCAGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCG
GGATTCAATTTTTGTTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGG
ATCCGTGGACGTTTGAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGC
CACCCAGCGGGATTGGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCA
GGATGAAAATTCGATAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGG
TAGTGGTTGACAAGCTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCAT
ACCAATCGGTGTTAAGTATAAAAGCAACTGTTTCGAAGAACAGGAGGGTG
AGGAAAAGAAGGAGAGGTGTGATACGTTGGAGGGATTTGAATGAATTGTG
TATGGTAGGATCCAGCATCGGCATGACTGGAAAAAAGGACTGTGTCATGG
CACAGTACATTGAAATGCTACGAAACAGCACTGAAATTTACAGACCGTCG
AGTCATTGAAGTGAGGAGCAGGACTGACAGGAATGATACTTCGATGAGAA
AATGAAAACAATATGAAGGACGAGCCACCTGTAACATTATCATTCCATTT
AATTAAATAAGCGTGCTTTTTTCATTCATTTATTCCGCCCTCCTTCAGGT
TGATTGGTTGCATTTC
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Coding sequence (CDS) from alignment at scaffold_5:407476..408841-

>mRNA_2465 ID=mRNA_2465|Name=jgi.p|Nanoce1779_2|580472|organism=Nannochloropsis oceanica|type=CDS|length=951bp|location=Sequence derived from alignment at scaffold_5:407476..408841- (Nannochloropsis oceanica)
ATGCGGGCGCCATCCTGGCTACTTGCCGGCGTTCTTCTTTCCTTTATGGG
ACAGACAAGGGCGTGCTTGGGCCCTCCGTACCTGTACTTGACCATGCATG
GAGGCGAAGATGATGGAGATGTAAATCAAGTCTACATCTACTCGCGAGAT
GGATGCCCTCTCGGCGAAGCACTAGAGGAATACACGGAGCTCAACGAGTT
ACGGGGGATGACCTTGTGGGGGGATTCCATCCTACTAGCGAATGCTAATC
GGCTAGATTCATTTATCGTGCAATACAAGGGGGCCTGCCGTAGCATGGAG
AGCATGAAAGAAATGCGTGTGATCGTGCCATTTGGAACGCCCGGGATCGA
CCATCCTTACGGCGTTACTACTGATCGAATACGTTACCTGTATGTGTCAA
CGCAAGGTAGCAATAGCGTTTATCGATACTATCTTACCACGGGAGAAGCA
GCACCAGTCTCGCCCGCGTTGGCGTCCGAGGGTGTACAAGATGATGACTA
CCCGGGACTGTTCGCTCAATTTGATCAGGACAAGGATGGGACGCGCAATG
TGGCGTGGCACCCGGATCAAAGGCTTTTGTTTGTTGCGAATAAAGACGAA
GGGGTGGTAGTGTTGGATGAGGATGGATATGAGCTGGGAAGATTAAATGC
AGATAAGCCGATTTCGGTGTCATTCTGTGACGGGCGGGATTCAATTTTTG
TTAGTAGTAAAGGGGATGACAGTGTGAGTGAGTGGGATCCGTGGACGTTT
GAATTGGTGGGTAAGTGGACGGATCGGAAGTTAAGCCACCCAGCGGGATT
GGTTTGTCACGAAGGAAGTTTGTTTGTCGTATCGCAGGATGAAAATTCGA
TAGTGGAGGTGGATTTGGAGAGTGGGAAGATGTGGGTAGTGGTTGACAAG
CTGGACGATAAGGGGGAGCAGTTGATTTTGAGTCATACCAATCGGTGTTA
A
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Synonyms
Publications