jgi.p|Nanoce1779_2|580471, mRNA_2464 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580471
Unique NamemRNA_2464
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1442
Alignment locationscaffold_5:406103..407544 +

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Properties
Property NameValue
TranscriptId580557
TrackFilteredModels2
ProteinId580471
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:406103..407544 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580471gene_2464Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580471mRNA_2464-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2464CDS_2464Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2464 ID=mRNA_2464|Name=jgi.p|Nanoce1779_2|580471|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp
AGACAGGGCAACAACAGCATCAGCAGCAGCAAAAAAGGCAAGTGATTGAA
GGAAAATTCACTGGAGAATGAGCACTCAACACATATCGGCTTCTGCTCTG
CCCAAATTGCACCAAGAAACGGATTTTTCCAAGCTTGAATCCGGTGCTGG
AGGCAGAATCCGCGAAAATGACGAATGCAACACCATCATGAGCGATGGAG
GAGTAGCAGCTGCAGGAGAGAAAGGAGGAAGGAGAGGGAGAGGAGGAGGA
GGAGATGAGCAAGAAATGTATCACCTAGCCGAAGAAAATGGCAATGGCGA
CACCAGCGGGAAGGAGGAGGAAGGGGGTATCCATTGGGCACCTGCAAGTC
TACGTGCTTCGCTGGAAACGTATCGGTGGGCGGAAATCCTTGTTTTGGTA
GTCATTGTTACCTTGACCTACATGGGCTTCAACCACAAGGGAAGAAAAAG
TCAAATGTTCATCCCTCAAGTCACTCAGCTCCTACCGGAGGGCACTTCGG
TAGTGCTGGGAAATGCGACAGCCTTCTCGTACCCCATTAAGTTCCAGGAC
GGACTCTTAGAATGCGTACCAACCATACTCCAACATTGTGGGTTAGACGC
AGAGCTAGCAGCAGTGGAACCATGTTGTGCGTTCATGGAAACGGGTGCGG
GACCGCATCAGACAATTTCTTCGCGTATGCTTGTGGGGCTCTGCATGATC
TTACCCTTGATTCTCCTCCTCCTTCGGCATGCTGTGATGCAAAAATGCAT
CTATTCTTCCTCCTCCTCCTCCTCTGCCTCTGCATCCGCCTCCAGAAATA
GCAGCAGTAACAGTTGCAGCAGCAGTACGGAAATCTCTCTCTTCTCTTCT
CCATCCACCTTCCCCTCCGCCACTCAATCCTTGAGGGACGTCCTCCTTGG
CTTCTTCTTCAGCATGGCCTTGACCGTTGCCACAACCAACAGCCTCAAAA
ACTATGTTTCCCATCCTCGGCCCAATCACTTTGCCCTCCTCCTCTTCGCT
TCCTTATCCTCTTCCTCTGCCAAAGCAGCCCATTACGCAAAGAGCGCTTG
GGAATCTTGGCCTTCAGGGCATTGTTCGATATCAATGACAGCGGGGGCGT
ACATCTCACTAGTCTTCCTTCGAGACATCAAGCAATTTGCCGGAACGACT
CAAAGAGAGTTAAGAACGATTCTGGTCTTATTGGCCCTGGGGCCGGTGTT
TCTTGCCTTGTTTATCGCTGGCACGCGTGTTCATGATTATTTCCACAGTG
CGGCTGATGCGGCGACGGGCATGGGGTTAGGTTTGCTCTGGGCTTTAGTG
GCTTTCTTTCAAATTATTCCTGCGAATGGCGTAGAGGTGCGCCCGAACAA
GCCATTGAAATATTTGTAGAATGGAAATGCAACCAATCAACCTGAAGGAG
GGCGGAATAAATGAATGAAAAAAGCACGCTTATTTAATTAAA
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protein sequence of jgi.p|Nanoce1779_2|580471

>mRNA_2464-protein ID=mRNA_2464-protein|Name=jgi.p|Nanoce1779_2|580471|organism=Nannochloropsis oceanica|type=polypeptide|length=434bp
MSTQHISASALPKLHQETDFSKLESGAGGRIRENDECNTIMSDGGVAAAG
EKGGRRGRGGGGDEQEMYHLAEENGNGDTSGKEEEGGIHWAPASLRASLE
TYRWAEILVLVVIVTLTYMGFNHKGRKSQMFIPQVTQLLPEGTSVVLGNA
TAFSYPIKFQDGLLECVPTILQHCGLDAELAAVEPCCAFMETGAGPHQTI
SSRMLVGLCMILPLILLLLRHAVMQKCIYSSSSSSSASASASRNSSSNSC
SSSTEISLFSSPSTFPSATQSLRDVLLGFFFSMALTVATTNSLKNYVSHP
RPNHFALLLFASLSSSSAKAAHYAKSAWESWPSGHCSISMTAGAYISLVF
LRDIKQFAGTTQRELRTILVLLALGPVFLALFIAGTRVHDYFHSAADAAT
GMGLGLLWALVAFFQIIPANGVEVRPNKPLKYL*
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mRNA from alignment at scaffold_5:406103..407544+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2464 ID=mRNA_2464|Name=jgi.p|Nanoce1779_2|580471|organism=Nannochloropsis oceanica|type=mRNA|length=1442bp|location=Sequence derived from alignment at scaffold_5:406103..407544+ (Nannochloropsis oceanica)
AGACAGGGCAACAACAGCATCAGCAGCAGCAAAAAAGGCAAGTGATTGAA
GGAAAATTCACTGGAGAATGAGCACTCAACACATATCGGCTTCTGCTCTG
CCCAAATTGCACCAAGAAACGGATTTTTCCAAGCTTGAATCCGGTGCTGG
AGGCAGAATCCGCGAAAATGACGAATGCAACACCATCATGAGCGATGGAG
GAGTAGCAGCTGCAGGAGAGAAAGGAGGAAGGAGAGGGAGAGGAGGAGGA
GGAGATGAGCAAGAAATGTATCACCTAGCCGAAGAAAATGGCAATGGCGA
CACCAGCGGGAAGGAGGAGGAAGGGGGTATCCATTGGGCACCTGCAAGTC
TACGTGCTTCGCTGGAAACGTATCGGTGGGCGGAAATCCTTGTTTTGGTA
GTCATTGTTACCTTGACCTACATGGGCTTCAACCACAAGGGAAGAAAAAG
TCAAATGTTCATCCCTCAAGTCACTCAGCTCCTACCGGAGGGCACTTCGG
TAGTGCTGGGAAATGCGACAGCCTTCTCGTACCCCATTAAGTTCCAGGAC
GGACTCTTAGAATGCGTACCAACCATACTCCAACATTGTGGGTTAGACGC
AGAGCTAGCAGCAGTGGAACCATGTTGTGCGTTCATGGAAACGGGTGCGG
GACCGCATCAGACAATTTCTTCGCGTATGCTTGTGGGGCTCTGCATGATC
TTACCCTTGATTCTCCTCCTCCTTCGGCATGCTGTGATGCAAAAATGCAT
CTATTCTTCCTCCTCCTCCTCCTCTGCCTCTGCATCCGCCTCCAGAAATA
GCAGCAGTAACAGTTGCAGCAGCAGTACGGAAATCTCTCTCTTCTCTTCT
CCATCCACCTTCCCCTCCGCCACTCAATCCTTGAGGGACGTCCTCCTTGG
CTTCTTCTTCAGCATGGCCTTGACCGTTGCCACAACCAACAGCCTCAAAA
ACTATGTTTCCCATCCTCGGCCCAATCACTTTGCCCTCCTCCTCTTCGCT
TCCTTATCCTCTTCCTCTGCCAAAGCAGCCCATTACGCAAAGAGCGCTTG
GGAATCTTGGCCTTCAGGGCATTGTTCGATATCAATGACAGCGGGGGCGT
ACATCTCACTAGTCTTCCTTCGAGACATCAAGCAATTTGCCGGAACGACT
CAAAGAGAGTTAAGAACGATTCTGGTCTTATTGGCCCTGGGGCCGGTGTT
TCTTGCCTTGTTTATCGCTGGCACGCGTGTTCATGATTATTTCCACAGTG
CGGCTGATGCGGCGACGGGCATGGGGTTAGGTTTGCTCTGGGCTTTAGTG
GCTTTCTTTCAAATTATTCCTGCGAATGGCGTAGAGGTGCGCCCGAACAA
GCCATTGAAATATTTGTAGAATGGAAATGCAACCAATCAACCTGAAGGAG
GGCGGAATAAATGAATGAAAAAAGCACGCTTATTTAATTAAA
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Coding sequence (CDS) from alignment at scaffold_5:406103..407544+

>mRNA_2464 ID=mRNA_2464|Name=jgi.p|Nanoce1779_2|580471|organism=Nannochloropsis oceanica|type=CDS|length=1302bp|location=Sequence derived from alignment at scaffold_5:406103..407544+ (Nannochloropsis oceanica)
ATGAGCACTCAACACATATCGGCTTCTGCTCTGCCCAAATTGCACCAAGA
AACGGATTTTTCCAAGCTTGAATCCGGTGCTGGAGGCAGAATCCGCGAAA
ATGACGAATGCAACACCATCATGAGCGATGGAGGAGTAGCAGCTGCAGGA
GAGAAAGGAGGAAGGAGAGGGAGAGGAGGAGGAGGAGATGAGCAAGAAAT
GTATCACCTAGCCGAAGAAAATGGCAATGGCGACACCAGCGGGAAGGAGG
AGGAAGGGGGTATCCATTGGGCACCTGCAAGTCTACGTGCTTCGCTGGAA
ACGTATCGGTGGGCGGAAATCCTTGTTTTGGTAGTCATTGTTACCTTGAC
CTACATGGGCTTCAACCACAAGGGAAGAAAAAGTCAAATGTTCATCCCTC
AAGTCACTCAGCTCCTACCGGAGGGCACTTCGGTAGTGCTGGGAAATGCG
ACAGCCTTCTCGTACCCCATTAAGTTCCAGGACGGACTCTTAGAATGCGT
ACCAACCATACTCCAACATTGTGGGTTAGACGCAGAGCTAGCAGCAGTGG
AACCATGTTGTGCGTTCATGGAAACGGGTGCGGGACCGCATCAGACAATT
TCTTCGCGTATGCTTGTGGGGCTCTGCATGATCTTACCCTTGATTCTCCT
CCTCCTTCGGCATGCTGTGATGCAAAAATGCATCTATTCTTCCTCCTCCT
CCTCCTCTGCCTCTGCATCCGCCTCCAGAAATAGCAGCAGTAACAGTTGC
AGCAGCAGTACGGAAATCTCTCTCTTCTCTTCTCCATCCACCTTCCCCTC
CGCCACTCAATCCTTGAGGGACGTCCTCCTTGGCTTCTTCTTCAGCATGG
CCTTGACCGTTGCCACAACCAACAGCCTCAAAAACTATGTTTCCCATCCT
CGGCCCAATCACTTTGCCCTCCTCCTCTTCGCTTCCTTATCCTCTTCCTC
TGCCAAAGCAGCCCATTACGCAAAGAGCGCTTGGGAATCTTGGCCTTCAG
GGCATTGTTCGATATCAATGACAGCGGGGGCGTACATCTCACTAGTCTTC
CTTCGAGACATCAAGCAATTTGCCGGAACGACTCAAAGAGAGTTAAGAAC
GATTCTGGTCTTATTGGCCCTGGGGCCGGTGTTTCTTGCCTTGTTTATCG
CTGGCACGCGTGTTCATGATTATTTCCACAGTGCGGCTGATGCGGCGACG
GGCATGGGGTTAGGTTTGCTCTGGGCTTTAGTGGCTTTCTTTCAAATTAT
TCCTGCGAATGGCGTAGAGGTGCGCCCGAACAAGCCATTGAAATATTTGT
AG
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Synonyms
Publications