jgi.p|Nanoce1779_2|580470, mRNA_2463 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580470
Unique Name	mRNA_2463
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3737
Alignment location	scaffold_5:403808..407544 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580556
Track	FilteredModels2
ProteinId	580470

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:403808..407544 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580470	gene_2463	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580470	mRNA_2463-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2463	CDS_2463	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:403808..407544+
coding sequence from alignment at scaffold_5:403808..407544+

mRNA sequence

>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Nanoce1779_2|580470|organism=Nannochloropsis oceanica|type=mRNA|length=3737bp
ACAGTTGTCACGGAGGTCGTTGCAAAAGCAGCCACCAGCAAGTGCACCGA
AGGAGGCAAGTCAACATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTA
CTCCTCCCGTCATGTCTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGC
GTTTGGGACATGCTGCGCACGAGTGGGTGGTCCATAAAAAGGTCTATGAC
CTGGCCTCGTACCTCGACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCT
CACGCGCGGCATGGATGTCACGCCCCTCTTCGAAAGCCACCACGTGAACG
ATGCCAAGACACAGGCGATACTCCGCAAGTTCTACATACGGGACTGCAAG
ACCACAACGACTTCTCCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGC
TCCCTCAACGCCCACGCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACAC
CCTCCGCTTCCGACTTTCGCAACGACGACCCAGAGGCAGATTTCTCTTTC
CGAAATAGAGCCTTTTACAAGATCTTCAAGCGACGGGCCGCTAAAGTACT
TGAAAAAGCAGAAGACAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAG
GCCCCACAACAGAGATGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGG
CTATTGTCCTTGGCCTGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGC
GGTGGTGGCAGGGGTGCTTCTAAATGCTTTGACTGGAATAGGGCATAATG
CGATGCATTCGGTCCCGAGCTGGTGGAGGTACCTGATGGACCTGTCATTG
TTTTCAAGCGAGGAATGGAGGATTTCCCACTGTATCTCTCATCATCATTA
CCCTGGTAGTCAGATTGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCC
ATAGTTTGTACTCGGGACCGCCCAGTAATCAATTTTTACCATTTTACTTG
TGGTGGGTATTATGCATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCAT
GAATGTATTCTTCTTGCGTATTCAACCATTGCGATGGGAAAATTTGCTGC
CGTTTATGGAGCTGGGATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGA
GGAGTAGTAGTAGGAGGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGT
GGCGGCCTCTGTTTTGATGGGCTTGCAAGCATTGCCTCTTCATCACTCCG
AGCACGCCTGGATGGATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTC
CCTTCCGGTGAAGGCAAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTC
CCCCCCCTCTTCTCGTCCTACAGTGCGCCCGATTGATTTTGGGCTGCATG
CGCTACGAGCAACACAGGACTACGACATTTCCGAGTTGCCATTATTAGCA
AAATTGGTCTTGTTCCCATTTAATCATCACAGACTGCATCATTTGTTGCC
GAGTGTGGATGAATCAAGGCTACCTTTATTGGAGGAGGCATTGAAGGAAA
CGTGTGAAGATGTAGGGGCGAAATACATCGTTTATCCGTGGAGGGAGCTG
GCCTGGGGGACGGTGAGGCATTGGATTGATATCGGAGGGGAGAGGAGGAG
GAAGTGGGCAGAGAGGCAGAAATCGAGGAAGAGGGAATGAGGTGATGGTG
CCGATGGAGAATGACTAGGCGTAAGAAGGCCAGCAGGAGAGTGGGGCCAA
GTATTGCATCGGTACCTTTTCTGTAAATCTGTCGATGCTGTATGGAGTAA
CATACAAACAATACCAGCAGCAGCAGTAGTAGTCATTGTGGTAGCAGGAA
TAATTAAAGCAGTAGAAATTGCAGCAGCTGGAGGAGGAGGTTAGTGAAAT
GAGGGATGGAAAATGTGTGCGGTACAATCCACGTCATGCGCCCACACGAA
CATGCCCGACAGACAGCACAACTTGTGTGCGTTGGTTCATCACTTGATGC
GCCCGGCGTCACTCCCTCCACGGCTAGTTGGATATCTTAACAAAACAAAG
ACTATGCGTAAAAGAGTAATGAATGGAAAAGAATCGACAAAAATTTGACT
ACCCTGCCTAAAAAAATATTGAATAGTGAGTCCTGTCATGCGACGTACGC
GCACCTACCATGAAAAACAATTCAAGCAGTAAGCGGCAGAAACGAACACG
GCAAGAAAACAGCGACTCAGTGACGGAAAGATCAAAAAGCAAAGAGTTGT
AAGGGAAAGATATTTGCCACCCCGCTCATATACTGTCTCTTCTACTCCAC
GTGCTGACCCATCTTCTCCCCACCCACTTTCCCGACATTCCCCTTAGACA
GGGCAACAACAGCATCAGCAGCAGCAAAAAAGGCAAGTGATTGAAGGAAA
ATTCACTGGAGAATGAGCACTCAACACATATCGGCTTCTGCTCTGCCCAA
ATTGCACCAAGAAACGGATTTTTCCAAGCTTGAATCCGGTGCTGGAGGCA
GAATCCGCGAAAATGACGAATGCAACACCATCATGAGCGATGGAGGAGTA
GCAGCTGCAGGAGAGAAAGGAGGAAGGAGAGGGAGAGGAGGAGGAGGAGA
TGAGCAAGAAATGTATCACCTAGCCGAAGAAAATGGCAATGGCGACACCA
GCGGGAAGGAGGAGGAAGGGGGTATCCATTGGGCACCTGCAAGTCTACGT
GCTTCGCTGGAAACGTATCGGTGGGCGGAAATCCTTGTTTTGGTAGTCAT
TGTTACCTTGACCTACATGGGCTTCAACCACAAGGGAAGAAAAAGTCAAA
TGTTCATCCCTCAAGTCACTCAGCTCCTACCGGAGGGCACTTCGGTAGTG
CTGGGAAATGCGACAGCCTTCTCGTACCCCATTAAGTTCCAGGACGGACT
CTTAGAATGCGTACCAACCATACTCCAACATTGTGGGTTAGACGCAGAGC
TAGCAGCAGTGGAACCATGTTGTGCGTTCATGGAAACGGGTGCGGGACCG
CATCAGACAATTTCTTCGCGTATGCTTGTGGGGCTCTGCATGATCTTACC
CTTGATTCTCCTCCTCCTTCGGCATGCTGTGATGCAAAAATGCATCTATT
CTTCCTCCTCCTCCTCCTCTGCCTCTGCATCCGCCTCCAGAAATAGCAGC
AGTAACAGTTGCAGCAGCAGTACGGAAATCTCTCTCTTCTCTTCTCCATC
CACCTTCCCCTCCGCCACTCAATCCTTGAGGGACGTCCTCCTTGGCTTCT
TCTTCAGCATGGCCTTGACCGTTGCCACAACCAACAGCCTCAAAAACTAT
GTTTCCCATCCTCGGCCCAATCACTTTGCCCTCCTCCTCTTCGCTTCCTT
ATCCTCTTCCTCTGCCAAAGCAGCCCATTACGCAAAGAGCGCTTGGGAAT
CTTGGCCTTCAGGGCATTGTTCGATATCAATGACAGCGGGGGCGTACATC
TCACTAGTCTTCCTTCGAGACATCAAGCAATTTGCCGGAACGACTCAAAG
AGAGTTAAGAACGATTCTGGTCTTATTGGCCCTGGGGCCGGTGTTTCTTG
CCTTGTTTATCGCTGGCACGCGTGTTCATGATTATTTCCACAGTGCGGCT
GATGCGGCGACGGGCATGGGGTTAGGTTTGCTCTGGGCTTTAGTGGCTTT
CTTTCAAATTATTCCTGCGAATGGCGTAGAGGTGCGCCCGAACAAGCCAT
TGAAATATTTGTAGAATGGAAATGCAACCAATCAACCTGAAGGAGGGCGG
AATAAATGAATGAAAAAAGCACGCTTATTTAATTAAA

protein sequence of jgi.p|Nanoce1779_2|580470

>mRNA_2463-protein ID=mRNA_2463-protein|Name=jgi.p|Nanoce1779_2|580470|organism=Nannochloropsis oceanica|type=polypeptide|length=525bp
MDKPLPSRGNFYSSRHVWLKEIGEAQRQRLGHAAHEWVVHKKVYDLASYL
DSHPGGRAWLDLTRGMDVTPLFESHHVNDAKTQAILRKFYIRDCKTTTTS
PSATAEPLAAAAPSTPTRLETWPSVAGTPSASDFRNDDPEADFSFRNRAF
YKIFKRRAAKVLEKAEDSSNSGSARGARGPTTEMRVLVWILLSAWLLSLA
WCCREGAGVGPAVVAGVLLNALTGIGHNAMHSVPSWWRYLMDLSLFSSEE
WRISHCISHHHYPGSQIDFEVAAIEPFIHSLYSGPPSNQFLPFYLWWVLC
ILGPFELLARGMNVFFLRIQPLRWENLLPFMELGLLIVFAGGGKGGVVVG
GEGLKKWVVMHVAASVLMGLQALPLHHSEHAWMDGKDDFSSPPSLPSGEG
KRDKSLLPASPSPPSSRPTVRPIDFGLHALRATQDYDISELPLLAKLVLF
PFNHHRLHHLLPSVDESRLPLLEEALKETCEDVGAKYIVYPWRELAWGTV
RHWIDIGGERRRKWAERQKSRKRE*

mRNA from alignment at scaffold_5:403808..407544+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Nanoce1779_2|580470|organism=Nannochloropsis oceanica|type=mRNA|length=3737bp|location=Sequence derived from alignment at scaffold_5:403808..407544+ (Nannochloropsis oceanica)
ACAGTTGTCACGGAGGTCGTTGCAAAAGCAGCCACCAGCAAGTGCACCGA
AGGAGGCAAGTCAACATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTA
CTCCTCCCGTCATGTCTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGC
GTTTGGGACATGCTGCGCACGAGTGGGTGGTCCATAAAAAGGTCTATGAC
CTGGCCTCGTACCTCGACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCT
CACGCGCGGCATGGATGTCACGCCCCTCTTCGAAAGCCACCACGTGAACG
ATGCCAAGACACAGGCGATACTCCGCAAGTTCTACATACGGGACTGCAAG
ACCACAACGACTTCTCCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGC
TCCCTCAACGCCCACGCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACAC
CCTCCGCTTCCGACTTTCGCAACGACGACCCAGAGGCAGATTTCTCTTTC
CGAAATAGAGCCTTTTACAAGATCTTCAAGCGACGGGCCGCTAAAGTACT
TGAAAAAGCAGAAGACAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAG
GCCCCACAACAGAGATGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGG
CTATTGTCCTTGGCCTGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGC
GGTGGTGGCAGGGGTGCTTCTAAATGCTTTGACTGGAATAGGGCATAATG
CGATGCATTCGGTCCCGAGCTGGTGGAGGTACCTGATGGACCTGTCATTG
TTTTCAAGCGAGGAATGGAGGATTTCCCACTGTATCTCTCATCATCATTA
CCCTGGTAGTCAGATTGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCC
ATAGTTTGTACTCGGGACCGCCCAGTAATCAATTTTTACCATTTTACTTG
TGGTGGGTATTATGCATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCAT
GAATGTATTCTTCTTGCGTATTCAACCATTGCGATGGGAAAATTTGCTGC
CGTTTATGGAGCTGGGATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGA
GGAGTAGTAGTAGGAGGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGT
GGCGGCCTCTGTTTTGATGGGCTTGCAAGCATTGCCTCTTCATCACTCCG
AGCACGCCTGGATGGATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTC
CCTTCCGGTGAAGGCAAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTC
CCCCCCCTCTTCTCGTCCTACAGTGCGCCCGATTGATTTTGGGCTGCATG
CGCTACGAGCAACACAGGACTACGACATTTCCGAGTTGCCATTATTAGCA
AAATTGGTCTTGTTCCCATTTAATCATCACAGACTGCATCATTTGTTGCC
GAGTGTGGATGAATCAAGGCTACCTTTATTGGAGGAGGCATTGAAGGAAA
CGTGTGAAGATGTAGGGGCGAAATACATCGTTTATCCGTGGAGGGAGCTG
GCCTGGGGGACGGTGAGGCATTGGATTGATATCGGAGGGGAGAGGAGGAG
GAAGTGGGCAGAGAGGCAGAAATCGAGGAAGAGGGAATGAGGTGATGGTG
CCGATGGAGAATGACTAGGCGTAAGAAGGCCAGCAGGAGAGTGGGGCCAA
GTATTGCATCGGTACCTTTTCTGTAAATCTGTCGATGCTGTATGGAGTAA
CATACAAACAATACCAGCAGCAGCAGTAGTAGTCATTGTGGTAGCAGGAA
TAATTAAAGCAGTAGAAATTGCAGCAGCTGGAGGAGGAGGTTAGTGAAAT
GAGGGATGGAAAATGTGTGCGGTACAATCCACGTCATGCGCCCACACGAA
CATGCCCGACAGACAGCACAACTTGTGTGCGTTGGTTCATCACTTGATGC
GCCCGGCGTCACTCCCTCCACGGCTAGTTGGATATCTTAACAAAACAAAG
ACTATGCGTAAAAGAGTAATGAATGGAAAAGAATCGACAAAAATTTGACT
ACCCTGCCTAAAAAAATATTGAATAGTGAGTCCTGTCATGCGACGTACGC
GCACCTACCATGAAAAACAATTCAAGCAGTAAGCGGCAGAAACGAACACG
GCAAGAAAACAGCGACTCAGTGACGGAAAGATCAAAAAGCAAAGAGTTGT
AAGGGAAAGATATTTGCCACCCCGCTCATATACTGTCTCTTCTACTCCAC
GTGCTGACCCATCTTCTCCCCACCCACTTTCCCGACATTCCCCTTAGACA
GGGCAACAACAGCATCAGCAGCAGCAAAAAAGGCAAGTGATTGAAGGAAA
ATTCACTGGAGAATGAGCACTCAACACATATCGGCTTCTGCTCTGCCCAA
ATTGCACCAAGAAACGGATTTTTCCAAGCTTGAATCCGGTGCTGGAGGCA
GAATCCGCGAAAATGACGAATGCAACACCATCATGAGCGATGGAGGAGTA
GCAGCTGCAGGAGAGAAAGGAGGAAGGAGAGGGAGAGGAGGAGGAGGAGA
TGAGCAAGAAATGTATCACCTAGCCGAAGAAAATGGCAATGGCGACACCA
GCGGGAAGGAGGAGGAAGGGGGTATCCATTGGGCACCTGCAAGTCTACGT
GCTTCGCTGGAAACGTATCGGTGGGCGGAAATCCTTGTTTTGGTAGTCAT
TGTTACCTTGACCTACATGGGCTTCAACCACAAGGGAAGAAAAAGTCAAA
TGTTCATCCCTCAAGTCACTCAGCTCCTACCGGAGGGCACTTCGGTAGTG
CTGGGAAATGCGACAGCCTTCTCGTACCCCATTAAGTTCCAGGACGGACT
CTTAGAATGCGTACCAACCATACTCCAACATTGTGGGTTAGACGCAGAGC
TAGCAGCAGTGGAACCATGTTGTGCGTTCATGGAAACGGGTGCGGGACCG
CATCAGACAATTTCTTCGCGTATGCTTGTGGGGCTCTGCATGATCTTACC
CTTGATTCTCCTCCTCCTTCGGCATGCTGTGATGCAAAAATGCATCTATT
CTTCCTCCTCCTCCTCCTCTGCCTCTGCATCCGCCTCCAGAAATAGCAGC
AGTAACAGTTGCAGCAGCAGTACGGAAATCTCTCTCTTCTCTTCTCCATC
CACCTTCCCCTCCGCCACTCAATCCTTGAGGGACGTCCTCCTTGGCTTCT
TCTTCAGCATGGCCTTGACCGTTGCCACAACCAACAGCCTCAAAAACTAT
GTTTCCCATCCTCGGCCCAATCACTTTGCCCTCCTCCTCTTCGCTTCCTT
ATCCTCTTCCTCTGCCAAAGCAGCCCATTACGCAAAGAGCGCTTGGGAAT
CTTGGCCTTCAGGGCATTGTTCGATATCAATGACAGCGGGGGCGTACATC
TCACTAGTCTTCCTTCGAGACATCAAGCAATTTGCCGGAACGACTCAAAG
AGAGTTAAGAACGATTCTGGTCTTATTGGCCCTGGGGCCGGTGTTTCTTG
CCTTGTTTATCGCTGGCACGCGTGTTCATGATTATTTCCACAGTGCGGCT
GATGCGGCGACGGGCATGGGGTTAGGTTTGCTCTGGGCTTTAGTGGCTTT
CTTTCAAATTATTCCTGCGAATGGCGTAGAGGTGCGCCCGAACAAGCCAT
TGAAATATTTGTAGAATGGAAATGCAACCAATCAACCTGAAGGAGGGCGG
AATAAATGAATGAAAAAAGCACGCTTATTTAATTAAA

Coding sequence (CDS) from alignment at scaffold_5:403808..407544+

>mRNA_2463 ID=mRNA_2463|Name=jgi.p|Nanoce1779_2|580470|organism=Nannochloropsis oceanica|type=CDS|length=1575bp|location=Sequence derived from alignment at scaffold_5:403808..407544+ (Nannochloropsis oceanica)
ATGGACAAGCCCTTGCCTTCCCGAGGTAACTTTTACTCCTCCCGTCATGT
CTGGCTAAAGGAAATTGGCGAAGCACAGCGTCAGCGTTTGGGACATGCTG
CGCACGAGTGGGTGGTCCATAAAAAGGTCTATGACCTGGCCTCGTACCTC
GACTCCCATCCCGGCGGGCGCGCCTGGCTTGATCTCACGCGCGGCATGGA
TGTCACGCCCCTCTTCGAAAGCCACCACGTGAACGATGCCAAGACACAGG
CGATACTCCGCAAGTTCTACATACGGGACTGCAAGACCACAACGACTTCT
CCCTCTGCCACTGCTGAGCCTCTTGCCGCCGCCGCTCCCTCAACGCCCAC
GCGCCTCGAGACCTGGCCTTCTGTTGCTGGGACACCCTCCGCTTCCGACT
TTCGCAACGACGACCCAGAGGCAGATTTCTCTTTCCGAAATAGAGCCTTT
TACAAGATCTTCAAGCGACGGGCCGCTAAAGTACTTGAAAAAGCAGAAGA
CAGCAGCAACTCCGGCAGCGCCCGCGGAGCCCGAGGCCCCACAACAGAGA
TGCGCGTGCTCGTCTGGATCTTATTGAGTGCATGGCTATTGTCCTTGGCC
TGGTGCTGCCGAGAAGGTGCTGGTGTGGGACCTGCGGTGGTGGCAGGGGT
GCTTCTAAATGCTTTGACTGGAATAGGGCATAATGCGATGCATTCGGTCC
CGAGCTGGTGGAGGTACCTGATGGACCTGTCATTGTTTTCAAGCGAGGAA
TGGAGGATTTCCCACTGTATCTCTCATCATCATTACCCTGGTAGTCAGAT
TGATTTTGAGGTGGCGGCCATTGAGCCTTTCATCCATAGTTTGTACTCGG
GACCGCCCAGTAATCAATTTTTACCATTTTACTTGTGGTGGGTATTATGC
ATTTTGGGGCCCTTCGAATTGCTAGCCCGGGGCATGAATGTATTCTTCTT
GCGTATTCAACCATTGCGATGGGAAAATTTGCTGCCGTTTATGGAGCTGG
GATTGTTAATAGTGTTTGCGGGTGGGGGAAAAGGAGGAGTAGTAGTAGGA
GGAGAAGGGTTGAAGAAGTGGGTAGTGATGCATGTGGCGGCCTCTGTTTT
GATGGGCTTGCAAGCATTGCCTCTTCATCACTCCGAGCACGCCTGGATGG
ATGGGAAAGATGACTTCTCCTCGCCTCCCTCTCTCCCTTCCGGTGAAGGC
AAGAGAGACAAGTCCCTCCTCCCTGCTTCTCCTTCCCCCCCCTCTTCTCG
TCCTACAGTGCGCCCGATTGATTTTGGGCTGCATGCGCTACGAGCAACAC
AGGACTACGACATTTCCGAGTTGCCATTATTAGCAAAATTGGTCTTGTTC
CCATTTAATCATCACAGACTGCATCATTTGTTGCCGAGTGTGGATGAATC
AAGGCTACCTTTATTGGAGGAGGCATTGAAGGAAACGTGTGAAGATGTAG
GGGCGAAATACATCGTTTATCCGTGGAGGGAGCTGGCCTGGGGGACGGTG
AGGCATTGGATTGATATCGGAGGGGAGAGGAGGAGGAAGTGGGCAGAGAG
GCAGAAATCGAGGAAGAGGGAATGA

Synonyms

Publications