jgi.p|Nanoce1779_2|552202, mRNA_2462 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|552202
Unique NamemRNA_2462
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length789
Alignment locationscaffold_5:402312..403543 -

Link to JBrowse

Properties
Property NameValue
TranscriptId552288
TrackFilteredModels2
ProteinId552202
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:402312..403543 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552202gene_2462Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|552202mRNA_2462-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2462CDS_2462Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2462 ID=mRNA_2462|Name=jgi.p|Nanoce1779_2|552202|organism=Nannochloropsis oceanica|type=mRNA|length=789bp
ACAGGAAACACCTCTAGCTACCCGGCTCGCAACTGCCCTGCTGCGTACGC
ATCGTCACGCAATGTTAGTCATGCAGCCTCGTGCCCTTCTCCTCACTGCC
AAGGCGGCGCGTCGTAGTCTAGCGAGTGCCACACCCACTGCAGTGACCTT
AATACGCGCCCTTTCTTCGGCCTCGCACACGAATCCGCCGCCTTCACCCG
ACCTGACCCCGGACCAGATCCGTCGCATCGGCGAACGTACTAAATCGCAA
CTCGAAGACCATCTTAAGCTCAAAACGGAAGTGCCCGCATATAGCCTTGA
CCCCTCCGCACCCGCAGGGCCTGTGGACGCTAACCACATCCGCCGTAAGC
GCCTCCTTTACCGCAGCAAACAAAGGGGATGGCTCGAAGTTGACCTCTTG
TTGGGGAGCTGGGCGGCGGAGAATGTTTTTACACTGACGGTGGCCGAATG
TGATGAGTATGAGAAGCTCTTGAATCAAGAAACGATCGATATCTTCAATA
TCATCAATGGTGCAATGCCCCCGCCGGTGGAGCTGGAAGGGTCGAAGATT
TTGAAGCGGCTGCAGGAGTATGCCATGAGTAGTCCTTTTGGAAAGGCGAG
TGCGAGGACGTACGAGACGGTGAAGGATCGAACGGGGATGATCTGAATTG
TAAATTTTGAGATTGTAAGGGAGTTTGAGAAGTAAAGTAGGCGTGTGGGA
TAGAGTGGAGGAAGGCGAGTGCTACGAAGGCAAGGGGTTGTGTATGTGAA
GAAACAGAATTAAACGCAGAGACAAAAGTGCGGAGGTGG
back to top

protein sequence of jgi.p|Nanoce1779_2|552202

>mRNA_2462-protein ID=mRNA_2462-protein|Name=jgi.p|Nanoce1779_2|552202|organism=Nannochloropsis oceanica|type=polypeptide|length=195bp
MLVMQPRALLLTAKAARRSLASATPTAVTLIRALSSASHTNPPPSPDLTP
DQIRRIGERTKSQLEDHLKLKTEVPAYSLDPSAPAGPVDANHIRRKRLLY
RSKQRGWLEVDLLLGSWAAENVFTLTVAECDEYEKLLNQETIDIFNIING
AMPPPVELEGSKILKRLQEYAMSSPFGKASARTYETVKDRTGMI*
back to top

mRNA from alignment at scaffold_5:402312..403543-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2462 ID=mRNA_2462|Name=jgi.p|Nanoce1779_2|552202|organism=Nannochloropsis oceanica|type=mRNA|length=1232bp|location=Sequence derived from alignment at scaffold_5:402312..403543- (Nannochloropsis oceanica)
ACAGGAAACACCTCTAGCTACCCGGCTCGCAACTGCCCTGCTGCGTACGC
ATCGTCACGCAATGTTAGTCATGCAGCCTCGTGCCCTTCTCCTCACTGCC
AAGGCGGCGCGTCGTAGTCTAGCGAGTGCCACACCCACTGCAGTGACCTT
AATACGCGCCCTTTCTTCGGCCTCGCACACGAATCCGCCGCCTTCACCCG
ACCTGACCCCGGACCAGGTATTTGTTTCGAGATGGCAAGCATAGGCTGGT
CTCCTATCTCCCTCGGAAGCTTGAGCGCTCGTCAGAACGATCGGTACAAT
TACCTGTGCCAGGCGCGGCACCACTTGTTCCGTGCAACTCTTCTTACAAC
TTTTCTTCGTCGCTTGATCTTTTCTGTTTCAGCAAGTTCACGGGCCGCAT
TCCCATGGAAACCACACAGACGTCGCTAGACAGCCCCCTCACCCTCACCT
GGCGGCATTCAATCACCCACGGCTCCCCCATTCCACCCAATCCTCCCTTC
TTGACCTCCAAGCCACAACCCCATACATGCGAAAACATCCGATCGAACAT
CAAAGACCACCTGCGCCTCAGAACTTGCATCCCCCCAGCCTTGACCCCAC
CTCCCTTCCTTTCTCCCTCAAACTCATCCCACCCCCTTCCCTCCTCCTCC
CCTTCCACAGATCCGTCGCATCGGCGAACGTACTAAATCGCAACTCGAAG
ACCATCTTAAGCTCAAAACGGAAGTGCCCGCATATAGCCTTGACCCCTCC
GCACCCGCAGGGCCTGTGGACGCTAACCACATCCGCCGTAAGCGCCTCCT
TTACCGCAGCAAACAAAGGGGATGGCTCGAAGTTGACCTCTTGTTGGGGA
GCTGGGCGGCGGAGAATGTTTTTACACTGACGGTGGCCGAATGTGATGAG
TATGAGAAGCTCTTGAATCAAGAAACGATCGATATCTTCAATATCATCAA
TGGTGCAATGCCCCCGCCGGTGGAGCTGGAAGGGTCGAAGATTTTGAAGC
GGCTGCAGGAGTATGCCATGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGG
ACGTACGAGACGGTGAAGGATCGAACGGGGATGATCTGAATTGTAAATTT
TGAGATTGTAAGGGAGTTTGAGAAGTAAAGTAGGCGTGTGGGATAGAGTG
GAGGAAGGCGAGTGCTACGAAGGCAAGGGGTTGTGTATGTGAAGAAACAG
AATTAAACGCAGAGACAAAAGTGCGGAGGTGG
back to top

Coding sequence (CDS) from alignment at scaffold_5:402312..403543-

>mRNA_2462 ID=mRNA_2462|Name=jgi.p|Nanoce1779_2|552202|organism=Nannochloropsis oceanica|type=CDS|length=1170bp|location=Sequence derived from alignment at scaffold_5:402312..403543- (Nannochloropsis oceanica)
ATCCGTCGCATCGGCGAACGTACTAAATCGCAACTCGAAGACCATCTTAA
GCTCAAAACGGAAGTGCCCGCATATAGCCTTGACCCCTCCGCACCCGCAG
GGCCTGTGGACGCTAACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGC
AAACAAAGGGGATGGCTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGC
GGAGAATGTTTTTACACTGACGGTGGCCGAATGTGATGAGTATGAGAAGC
TCTTGAATCAAGAAACGATCGATATCTTCAATATCATCAATGGTGCAATG
CCCCCGCCGGTGGAGCTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGA
GTATGCCATGAGTAGTCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGA
CGGTGAAGGATCGAACGGGGATGATCTGAATGTTAGTCATGCAGCCTCGT
GCCCTTCTCCTCACTGCCAAGGCGGCGCGTCGTAGTCTAGCGAGTGCCAC
ACCCACTGCAGTGACCTTAATACGCGCCCTTTCTTCGGCCTCGCACACGA
ATCCGCCGCCTTCACCCGACCTGACCCCGGACCAGATCCGTCGCATCGGC
GAACGTACTAAATCGCAACTCGAAGACCATCTTAAGCTCAAAACGGAAGT
GCCCGCATATAGCCTTGACCCCTCCGCACCCGCAGGGCCTGTGGACGCTA
ACCACATCCGCCGTAAGCGCCTCCTTTACCGCAGCAAACAAAGGGGATGG
CTCGAAGTTGACCTCTTGTTGGGGAGCTGGGCGGCGGAGAATGTTTTTAC
ACTGACGGTGGCCGAATGTGATGAGTATGAGAAGCTCTTGAATCAAGAAA
CGATCGATATCTTCAATATCATCAATGGTGCAATGCCCCCGCCGGTGGAG
CTGGAAGGGTCGAAGATTTTGAAGCGGCTGCAGGAGTATGCCATGAGTAG
TCCTTTTGGAAAGGCGAGTGCGAGGACGTACGAGACGGTGAAGGATCGAA
CGGGGATGATCTGAATGTTAGTCATGCAGCCTCGTGCCCTTCTCCTCACT
GCCAAGGCGGCGCGTCGTAGTCTAGCGAGTGCCACACCCACTGCAGTGAC
CTTAATACGCGCCCTTTCTTCGGCCTCGCACACGAATCCGCCGCCTTCAC
CCGACCTGACCCCGGACCAG
back to top
Synonyms
Publications