jgi.p|Nanoce1779_2|580463, mRNA_2460 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580463
Unique NamemRNA_2460
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length778
Alignment locationscaffold_5:400285..401165 -

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Properties
Property NameValue
TranscriptId580549
TrackFilteredModels2
ProteinId580463
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:400285..401165 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580463gene_2460Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580463mRNA_2460-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2460CDS_2460Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2460 ID=mRNA_2460|Name=jgi.p|Nanoce1779_2|580463|organism=Nannochloropsis oceanica|type=mRNA|length=778bp
CATCATAACGCAGTTAGTGCACTGCAGTACTAACTAGTGCCCTTGCACAC
CAGTCCACTCGCTCTGGCCCAGACACTGCCGCATAGAATCACGTCGCGTG
TGCGCAGTGGTAGCAGCCGGGACGGCGCTTTTGTCCAAGCTCCCTGGATT
ACACTCACTCATACAATGTAGAAGTCTCTCAGCCTCCCCCCTCCCCTCCC
CACGTCAAGCAATATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTT
TTGGCTTCATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTAC
GGCGACAGCCCGGAGGAGACCGAGAAGAAGTTGGAGCGCATGGCACTCGA
GGACCAGCTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGT
CCGACGTCTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAACCAA
CAGGCCGATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTG
CGTGTTCTGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCA
TCGACACACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGCAAA
GTAAAGAGACAAAAGGACATGGACCCTCCCTCCTCCTGATCATACCCAGT
AAGTGAATAAATGGAAAGCACACAGTACGTGGAAGGCCGAAAGACAGAAT
GAGGAAGACTATCGGGAGAACATATGAAGGAGAAAGAAGAGAAAAGAAAA
AAGCTTGTACATGACCCTGAGACAAAAA
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protein sequence of jgi.p|Nanoce1779_2|580463

>mRNA_2460-protein ID=mRNA_2460-protein|Name=jgi.p|Nanoce1779_2|580463|organism=Nannochloropsis oceanica|type=polypeptide|length=142bp
MVKLNRMVLTQGFGFILLPVIAVAVTKFYGDSPEETEKKLERMALEDQLK
NSRARASVGKGESDVSVMHDFIRKQAINQQADYSVSAFFLFPPFFCVFWS
TVPSSKPSFNGFIDTLIKTQDILRSGRGKVKRQKDMDPPSS*
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mRNA from alignment at scaffold_5:400285..401165-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2460 ID=mRNA_2460|Name=jgi.p|Nanoce1779_2|580463|organism=Nannochloropsis oceanica|type=mRNA|length=881bp|location=Sequence derived from alignment at scaffold_5:400285..401165- (Nannochloropsis oceanica)
CATCATAACGCAGTTAGTGCACTGCAGTACTAACTAGTGCCCTTGCACAC
CAGTCCACTCGCTCTGGCCCAGACACTGCCGCATAGAATCACGTCGCGTG
TGCGCAGTGGTAGCAGCCGGGACGGCGCTTTTGTCCAAGCTCCCTGGATT
ACACTCACTCATACAATGTAGAAGTCTCTCAGCCTCCCCCCTCCCCTCCC
CACGTCAAGCAATATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTT
TTGGCTTCATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTAC
GGCGACAGCCCGGAGGAGACCGAGAAGAAGTTGGTAGGTTTGTAAGGTTG
GAAACTCGGGAAGGTGGCGAGCACCATGGCGGCTCATCTTCCACAGAACC
CCTGAAGACTGACTCCTGTACACTCCCATCTCACAGGAGCGCATGGCACT
CGAGGACCAGCTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGG
AGTCCGACGTCTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAAC
CAACAGGCCGATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTT
TTGCGTGTTCTGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTT
TCATCGACACACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGC
AAAGTAAAGAGACAAAAGGACATGGACCCTCCCTCCTCCTGATCATACCC
AGTAAGTGAATAAATGGAAAGCACACAGTACGTGGAAGGCCGAAAGACAG
AATGAGGAAGACTATCGGGAGAACATATGAAGGAGAAAGAAGAGAAAAGA
AAAAAGCTTGTACATGACCCTGAGACAAAAA
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Coding sequence (CDS) from alignment at scaffold_5:400285..401165-

>mRNA_2460 ID=mRNA_2460|Name=jgi.p|Nanoce1779_2|580463|organism=Nannochloropsis oceanica|type=CDS|length=852bp|location=Sequence derived from alignment at scaffold_5:400285..401165- (Nannochloropsis oceanica)
GAGCGCATGGCACTCGAGGACCAGCTTAAGAACTCCCGGGCGAGGGCAAG
TGTGGGGAAAGGGGAGTCCGACGTCTCAGTTATGCACGATTTCATACGGA
AGCAGGCCATCAACCAACAGGCCGATTATAGCGTAAGTGCATTTTTCCTG
TTTCCCCCTTTCTTTTGCGTGTTCTGGAGTACTGTGCCATCTTCGAAGCC
TTCTTTCAATGGTTTCATCGACACACTTATTAAAACACAGGATATATTAC
GCTCTGGCCGAGGCAAAGTAAAGAGACAAAAGGACATGGACCCTCCCTCC
TCCTGAATGGTCAAGCTAAACCGCATGGTGCTGACCCAAGGTTTTGGCTT
CATCCTTCTGCCGGTAATAGCGGTGGCCGTGACCAAATTTTACGGCGACA
GCCCGGAGGAGACCGAGAAGAAGTTGGAGCGCATGGCACTCGAGGACCAG
CTTAAGAACTCCCGGGCGAGGGCAAGTGTGGGGAAAGGGGAGTCCGACGT
CTCAGTTATGCACGATTTCATACGGAAGCAGGCCATCAACCAACAGGCCG
ATTATAGCGTAAGTGCATTTTTCCTGTTTCCCCCTTTCTTTTGCGTGTTC
TGGAGTACTGTGCCATCTTCGAAGCCTTCTTTCAATGGTTTCATCGACAC
ACTTATTAAAACACAGGATATATTACGCTCTGGCCGAGGCAAAGTAAAGA
GACAAAAGGACATGGACCCTCCCTCCTCCTGAATGGTCAAGCTAAACCGC
ATGGTGCTGACCCAAGGTTTTGGCTTCATCCTTCTGCCGGTAATAGCGGT
GGCCGTGACCAAATTTTACGGCGACAGCCCGGAGGAGACCGAGAAGAAGT
TG
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Synonyms
Publications