jgi.p|Nanoce1779_2|576687, mRNA_246 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|576687
Unique Name	mRNA_246
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1728
Alignment location	scaffold_3:618875..620857 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	576773
Track	FilteredModels2
ProteinId	576687

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_3	supercontig	scaffold_3:618875..620857 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576687	gene_246	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|576687	mRNA_246-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_246	CDS_246	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_3:618875..620857+
coding sequence from alignment at scaffold_3:618875..620857+

mRNA sequence

>mRNA_246 ID=mRNA_246|Name=jgi.p|Nanoce1779_2|576687|organism=Nannochloropsis oceanica|type=mRNA|length=1728bp
ACAGATGCTACAGACAAGAAACAAAGGTATGGAGCTGATAAGGAGCAGCG
AGTGCGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGAT
ATCGCGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGG
CAAGGAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGA
TCAGCTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTAC
ACAGTTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACG
CCGTCGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAG
ATTTACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGCCGGTCTC
GCCTGCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAGA
GCTTGCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACCT
TCCTTCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCGC
CCGTCCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGAT
GCGGCCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATAC
GGCTATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTCT
TTTGCGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTCT
TCTGATCAATGGCATCACGGTGATCAAGCACGGCCGTCGTGGCTCCCCCA
AGCTCCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGGGCT
TCCGACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATCCAT
TTCCAACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATCACC
CCGGCCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCCCTG
GCAGTACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCACCGG
AGAATTACCACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTCGTT
CCTTGGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTGGAG
GGGTTCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGCAGC
AACAGCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTCCAG
CATTCGGCTAGTAAAAAGCGGGATCCAATCCATGATTATAGAGGCAAAAG
GGTGCTGTAATTCCAATATTCAATTGTATTCACTCCAATTTATTTGATTG
GGAAGAATCCACAAGAGAGATCCTTTCGCATATATCTCAACATACCTAGT
GCATGTATGCACCCTCTTGCTGCTGCTACCACTACCAGTACAAACTAAAC
TACTGCTGATCGTGATTCCCAACATTCCCCTCTTCCCCCTCCCGCCTCTG
CTCCTTCTTTTCCTCATCATCCTCGAACATCTCTTCCACCACCACCATCA
CCAACTCCGTTCAGCTCATTTCAGCCTCTCCAAACGCCGCCTCATGTGCT
GCCCTATTCAGCAGTTGAGTCCACCGACGCGCGTCTTCCTCACTGTCTAC
CGACAACAGAATGTCCCGCTCTCGTTCCTCCAGACAACTAACCGAGATTG
TCACCATTGCACCCCCTCCTCGCCCACG

protein sequence of jgi.p|Nanoce1779_2|576687

>mRNA_246-protein ID=mRNA_246-protein|Name=jgi.p|Nanoce1779_2|576687|organism=Nannochloropsis oceanica|type=polypeptide|length=419bp
MLQTRNKGMELIRSSECGVPDRHASSKLMPRDIARQSEGEDCISLGIVGK
EVVAIPVRGNSCRRLISSGGPCSVSCVSGRAYTVYLVQVRHKGQDYIIRR
RFREFSALNDCIKDEDLRAIFPPRSLFAKAGLACALETRQSRLAYYIKEL
AHKLSGEPCKDKILTFLRATDLCTLEQDAAARPSFSHYDEKGERESSEMR
PAIAASTQTIGLSMIRLSSAEHEAQAPKARHSFAEMAEHRAALSRLVPLL
INGITVIKHGRRGSPKLRLIFCNEDFSRIFWASDRINSHKRSNLSSLSIS
NVTEVREGTAPDPHHPGLFGTVTLRRRRASSLAVPAIVSCSGSNNSSTGE
LPPIPRAFSLIAAARSLDLEALTADDYTLLLEGFRSAVKLNMAATSTAAT
AAETEVDVRGNKAVPAFG*

mRNA from alignment at scaffold_3:618875..620857+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_246 ID=mRNA_246|Name=jgi.p|Nanoce1779_2|576687|organism=Nannochloropsis oceanica|type=mRNA|length=1983bp|location=Sequence derived from alignment at scaffold_3:618875..620857+ (Nannochloropsis oceanica)
ACAGATGCTACAGACAAGAAACAAAGGTATGGAGCTGATAAGGAGCAGCG
AGTGCGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGAT
ATCGCGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGG
CAAGGAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGA
TCAGCTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTAC
ACAGTTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACG
CCGTCGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAG
ATTTACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGGTACATTA
CAGTGAATGCTTGAGCTAAATTTTGGTCATCCATTGGTCTGCTTGCTTAT
GCTAACACCGCTCCACTGCTTCATTCCCACCTCAACATTACAGCCGGTCT
CGCCTGCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAG
AGCTTGCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACC
TTCCTTCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCG
CCCGTCCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGA
TGCGGCCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATA
CGGCTATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTC
TTTTGCGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTC
TTCTGATCAATGGCATCACGGTGATCAAGGTAAGTTTCAGGCTAGCTCCT
AATTGAGTATACCTCTGCCGTATTTGGCCCCTCTTTTCTGTATTTTTTGC
CCGCATTGTTCGCCTCGCTGAATCGTCAGTCTCTTTTCTCGTCAATGTCT
CTCACACCACCTAACTATCAACATCACAAACAGCACGGCCGTCGTGGCTC
CCCCAAGCTCCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCT
GGGCTTCCGACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTA
TCCATTTCCAACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCA
TCACCCCGGCCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCT
CCCTGGCAGTACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGC
ACCGGAGAATTACCACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGC
TCGTTCCTTGGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGC
TGGAGGGGTTCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACA
GCAGCAACAGCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGT
TCCAGCATTCGGCTAGTAAAAAGCGGGATCCAATCCATGATTATAGAGGC
AAAAGGGTGCTGTAATTCCAATATTCAATTGTATTCACTCCAATTTATTT
GATTGGGAAGAATCCACAAGAGAGATCCTTTCGCATATATCTCAACATAC
CTAGTGCATGTATGCACCCTCTTGCTGCTGCTACCACTACCAGTACAAAC
TAAACTACTGCTGATCGTGATTCCCAACATTCCCCTCTTCCCCCTCCCGC
CTCTGCTCCTTCTTTTCCTCATCATCCTCGAACATCTCTTCCACCACCAC
CATCACCAACTCCGTTCAGCTCATTTCAGCCTCTCCAAACGCCGCCTCAT
GTGCTGCCCTATTCAGCAGTTGAGTCCACCGACGCGCGTCTTCCTCACTG
TCTACCGACAACAGAATGTCCCGCTCTCGTTCCTCCAGACAACTAACCGA
GATTGTCACCATTGCACCCCCTCCTCGCCCACG

Coding sequence (CDS) from alignment at scaffold_3:618875..620857+

>mRNA_246 ID=mRNA_246|Name=jgi.p|Nanoce1779_2|576687|organism=Nannochloropsis oceanica|type=CDS|length=3771bp|location=Sequence derived from alignment at scaffold_3:618875..620857+ (Nannochloropsis oceanica)
ATGCTACAGACAAGAAACAAAGGTATGGAGCTGATAAGGAGCAGCGAGTG
CGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGAGATATCG
CGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGTAGGCAAG
GAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGCTGATCAG
CTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCGTACACAG
TTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTATACGCCGT
CGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACGAAGATTT
ACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGCCGGTCTCGCCT
GCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAAAGAGCTT
GCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCACCTTCCT
TCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCTCGCCCGT
CCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGAGATGCGG
CCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGATACGGCT
ATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACATTCTTTTG
CGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCCTCTTCTG
ATCAATGGCATCACGGTGATCAAGCACGGCCGTCGTGGCTCCCCCAAGCT
CCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGGGCTTCCG
ACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATCCATTTCC
AACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATCACCCCGG
CCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCCCTGGCAG
TACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCACCGGAGAA
TTACCACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTCGTTCCTT
GGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTGGAGGGGT
TCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGCAGCAACA
GCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTCCAGCATT
CGGCTAGATGCTACAGACAAGAAACAAAGGTATGGAGCTGATAAGGAGCA
GCGAGTGCGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAATGCCAAGA
GATATCGCGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGGGCATTGT
AGGCAAGGAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGCAGAAGGC
TGATCAGCTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGGACGGGCG
TACACAGTTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATTACATTAT
ACGCCGTCGATTCCGCGAATTCTCTGCCCTCAACGATTGTATCAAGGACG
AAGATTTACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAAAGCCGGT
CTCGCCTGCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATTACATTAA
AGAGCTTGCTCACAAGCTATCTGGGGAACCATGCAAGGACAAGATTCTCA
CCTTCCTTCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGCAGCTGCT
CGCCCGTCCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAATCCTCGGA
GATGCGGCCAGCGATAGCGGCAAGTACTCAAACAATAGGACTGTCTATGA
TACGGCTATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGCACGACAT
TCTTTTGCGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTCTTGTCCC
TCTTCTGATCAATGGCATCACGGTGATCAAGCACGGCCGTCGTGGCTCCC
CCAAGCTCCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAATTTTCTGG
GCTTCCGACAGGATCAACAGTCATAAACGCTCCAATCTCTCCTCCCTATC
CATTTCCAACGTGACAGAGGTGCGAGAAGGGACGGCACCTGATCCCCATC
ACCCCGGCCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGCCTCCTCC
CTGGCAGTACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACAGCAGCAC
CGGAGAATTACCACCGATACCGCGGGCCTTTTCTCTCATCGCGGCTGCTC
GTTCCTTGGACCTTGAGGCACTGACTGCTGATGACTATACTCTCTTGCTG
GAGGGGTTCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCTCAACAGC
AGCAACAGCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAGGCAGTTC
CAGCATTCGGCTAGATGCTACAGACAAGAAACAAAGGTATGGAGCTGATA
AGGAGCAGCGAGTGCGGCGTCCCCGACCGACATGCCAGCAGCAAGCTAAT
GCCAAGAGATATCGCGCGCCAGTCTGAGGGAGAAGACTGCATTAGCCTGG
GCATTGTAGGCAAGGAAGTGGTGGCTATCCCGGTCAGGGGCAACAGTTGC
AGAAGGCTGATCAGCTCCGGTGGTCCTTGTTCCGTTTCATGTGTGTCCGG
ACGGGCGTACACAGTTTATCTAGTTCAGGTGCGGCACAAAGGCCAGGATT
ACATTATACGCCGTCGATTCCGCGAATTCTCTGCCCTCAACGATTGTATC
AAGGACGAAGATTTACGAGCAATATTTCCTCCCCGCTCTCTGTTCGCCAA
AGCCGGTCTCGCCTGCGCGCTAGAAACACGCCAGAGTCGCTTGGCTTATT
ACATTAAAGAGCTTGCTCACAAGCTATCTGGGGAACCATGCAAGGACAAG
ATTCTCACCTTCCTTCGAGCCACGGACCTGTGTACCCTTGAGCAGGACGC
AGCTGCTCGCCCGTCCTTCTCGCACTATGACGAAAAGGGAGAGCGGGAAT
CCTCGGAGATGCGGCCAGCGATAGCGGCAAGTACTCAAACAATAGGACTG
TCTATGATACGGCTATCATCAGCGGAGCATGAGGCACAGGCGCCCAAGGC
ACGACATTCTTTTGCGGAGATGGCCGAGCACCGGGCAGCATTGTCGCGTC
TTGTCCCTCTTCTGATCAATGGCATCACGGTGATCAAGCACGGCCGTCGT
GGCTCCCCCAAGCTCCGCCTTATCTTCTGCAACGAGGATTTTTCGCGAAT
TTTCTGGGCTTCCGACAGGATCAACAGTCATAAACGCTCCAATCTCTCCT
CCCTATCCATTTCCAACGTGACAGAGGTGCGAGAAGGGACGGCACCTGAT
CCCCATCACCCCGGCCTCTTCGGCACAGTCACCCTCCGTCGACGTCGTGC
CTCCTCCCTGGCAGTACCTGCAATCGTTAGTTGCAGTGGTAGCAACAACA
GCAGCACCGGAGAATTACCACCGATACCGCGGGCCTTTTCTCTCATCGCG
GCTGCTCGTTCCTTGGACCTTGAGGCACTGACTGCTGATGACTATACTCT
CTTGCTGGAGGGGTTCCGTTCCGCGGTAAAACTCAACATGGCTGCGACCT
CAACAGCAGCAACAGCGGCAGAAACGGAAGTTGATGTGAGGGGAAACAAG
GCAGTTCCAGCATTCGGCTAG

Synonyms

Publications