jgi.p|Nanoce1779_2|524941, mRNA_2459 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|524941
Unique NamemRNA_2459
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length747
Alignment locationscaffold_5:398921..399820 +

Link to JBrowse

Properties
Property NameValue
TranscriptId525027
TrackFilteredModels2
ProteinId524941
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:398921..399820 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524941gene_2459Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|524941mRNA_2459-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2459CDS_2459Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2459 ID=mRNA_2459|Name=jgi.p|Nanoce1779_2|524941|organism=Nannochloropsis oceanica|type=mRNA|length=747bp
ATGCACTTGGACCCTACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTC
CCACCACGTCCACCTCAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCG
CTACCCCTGTAGGCGACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTG
CTGGCGAGTCCTCTGTTTCAACGCATGACCCAGGGAATAGATGAGGACGA
GCATTCGATCGAGATGCATTTGCCGTACGTGGCCCATAGGATCAGAGCAA
CGCAGGGTATTACCATTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCG
CAGGAGGCGGAGTACGGACGCATCTTCGCGTCCTACCTCTCCGATCCCTC
CAACTTCTTCATCATCAGCACCGACTTCTGCCACTGGGGCCGTCGCTTCG
CCTACCAACCGTACGACTCATCCTACGGCACCACCATCGCTGACTACATC
GAGTGGCTGGATAAGCAGGGCATGGGCTTGATAGAGGAGGGCGACCCAAA
GGCCTTTACCACGTACCTCCGCAAGCACCAAAATACCATCTGTGGTCGTC
ATCCGATCAGTGTTTTCTTGCAGGCGGCCAAAGCATACAGGGAGAGAGAG
GGAGGGAGCGAGGAGATACGGGTCGGCTTCGTGAGGTATGCGCAGAGTAG
TAAATGTGTGAGTCGGCAGGATTCGTCTGTGAGCTACGCGAGTGCTGTGG
CCACGACAGTATCGGCGAATGGGGGAAATGGAGGGAAGAAGGGGTAG
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protein sequence of jgi.p|Nanoce1779_2|524941

>mRNA_2459-protein ID=mRNA_2459-protein|Name=jgi.p|Nanoce1779_2|524941|organism=Nannochloropsis oceanica|type=polypeptide|length=249bp
MHLDPTLIRRIFILGPSHHVHLKACALSGASVCATPVGDLTVDEAVRAEL
LASPLFQRMTQGIDEDEHSIEMHLPYVAHRIRATQGITIVPVMVGALDPA
QEAEYGRIFASYLSDPSNFFIISTDFCHWGRRFAYQPYDSSYGTTIADYI
EWLDKQGMGLIEEGDPKAFTTYLRKHQNTICGRHPISVFLQAAKAYRERE
GGSEEIRVGFVRYAQSSKCVSRQDSSVSYASAVATTVSANGGNGGKKG*
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mRNA from alignment at scaffold_5:398921..399820+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2459 ID=mRNA_2459|Name=jgi.p|Nanoce1779_2|524941|organism=Nannochloropsis oceanica|type=mRNA|length=900bp|location=Sequence derived from alignment at scaffold_5:398921..399820+ (Nannochloropsis oceanica)
ATGCACTTGGACCCTACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTC
CCACCACGTCCACCTCAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCG
CTACCCCTGTAGGCGACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTG
CTGGCGAGTCCTCTGTTTCAACGCATGACCCAGGGAATAGATGAGGACGA
GCATTCGATCGAGATGCATTTGCCGTACGTGGCCCATAGGATCAGAGCAA
CGCAGGGTATTACCATTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCG
CAGGAGGCGGAGTACGGACGGTACGTGTGTTACTATGCCCGAAAATCTAG
AGGATATCTGTTGCGATAGAAAGGGCGTCATTCACCCTCCTTCCCTTACT
CCCCTCCCTCTCCCGTCACTCATCCACTCACCTACCCTCCCTCACTCCCG
TTCTCCTCTCCTCCCACCCATAGCATCTTCGCGTCCTACCTCTCCGATCC
CTCCAACTTCTTCATCATCAGCACCGACTTCTGCCACTGGGGCCGTCGCT
TCGCCTACCAACCGTACGACTCATCCTACGGCACCACCATCGCTGACTAC
ATCGAGTGGCTGGATAAGCAGGGCATGGGCTTGATAGAGGAGGGCGACCC
AAAGGCCTTTACCACGTACCTCCGCAAGCACCAAAATACCATCTGTGGTC
GTCATCCGATCAGTGTTTTCTTGCAGGCGGCCAAAGCATACAGGGAGAGA
GAGGGAGGGAGCGAGGAGATACGGGTCGGCTTCGTGAGGTATGCGCAGAG
TAGTAAATGTGTGAGTCGGCAGGATTCGTCTGTGAGCTACGCGAGTGCTG
TGGCCACGACAGTATCGGCGAATGGGGGAAATGGAGGGAAGAAGGGGTAG
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Coding sequence (CDS) from alignment at scaffold_5:398921..399820+

>mRNA_2459 ID=mRNA_2459|Name=jgi.p|Nanoce1779_2|524941|organism=Nannochloropsis oceanica|type=CDS|length=1494bp|location=Sequence derived from alignment at scaffold_5:398921..399820+ (Nannochloropsis oceanica)
ATGCACTTGGACCCTACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTC
CCACCACGTCCACCTCAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCG
CTACCCCTGTAGGCGACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTG
CTGGCGAGTCCTCTGTTTCAACGCATGACCCAGGGAATAGATGAGGACGA
GCATTCGATCGAGATGCATTTGCCGTACGTGGCCCATAGGATCAGAGCAA
CGCAGGGTATTACCATTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCG
CAGGAGGCGGAGTACGGACGCATCTTCGCGTCCTACCTCTCCGATCCCTC
CAACTTCTTCATCATCAGCACCGACTTCTGCCACTGGGGCCGTCGCTTCG
CCTACCAACCGTACGACTCATCCTACGGCACCACCATCGCTGACTACATC
GAGTGGCTGGATAAGCAGGGCATGGGCTTGATAGAGGAGGGCGACCCAAA
GGCCTTTACCACGTACCTCCGCAAGCACCAAAATACCATCTGTGGTCGTC
ATCCGATCAGTGTTTTCTTGCAGGCGGCCAAAGCATACAGGGAGAGAGAG
GGAGGGAGCGAGGAGATACGGGTCGGCTTCGTGAGGTATGCGCAGAGTAG
TAAATGTGTGAGTCGGCAGGATTCGTCTGTGAGCTACGCGAGTGCTGTGG
CCACGACAGTATCGGCGAATGGGGGAAATGGAGGGAAGAAGGGGTAGATG
CACTTGGACCCTACTTTGATCCGCCGCATCTTTATCTTAGGGCCCTCCCA
CCACGTCCACCTCAAAGCTTGTGCTCTCTCGGGCGCCTCTGTGTGCGCTA
CCCCTGTAGGCGACCTTACAGTGGACGAGGCTGTTCGAGCCGAGTTGCTG
GCGAGTCCTCTGTTTCAACGCATGACCCAGGGAATAGATGAGGACGAGCA
TTCGATCGAGATGCATTTGCCGTACGTGGCCCATAGGATCAGAGCAACGC
AGGGTATTACCATTGTGCCGGTAATGGTGGGTGCATTGGACCCTGCGCAG
GAGGCGGAGTACGGACGCATCTTCGCGTCCTACCTCTCCGATCCCTCCAA
CTTCTTCATCATCAGCACCGACTTCTGCCACTGGGGCCGTCGCTTCGCCT
ACCAACCGTACGACTCATCCTACGGCACCACCATCGCTGACTACATCGAG
TGGCTGGATAAGCAGGGCATGGGCTTGATAGAGGAGGGCGACCCAAAGGC
CTTTACCACGTACCTCCGCAAGCACCAAAATACCATCTGTGGTCGTCATC
CGATCAGTGTTTTCTTGCAGGCGGCCAAAGCATACAGGGAGAGAGAGGGA
GGGAGCGAGGAGATACGGGTCGGCTTCGTGAGGTATGCGCAGAGTAGTAA
ATGTGTGAGTCGGCAGGATTCGTCTGTGAGCTACGCGAGTGCTGTGGCCA
CGACAGTATCGGCGAATGGGGGAAATGGAGGGAAGAAGGGGTAG
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Synonyms
Publications