jgi.p|Nanoce1779_2|580456, mRNA_2458 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580456
Unique Name	mRNA_2458
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1834
Alignment location	scaffold_5:396495..398328 -

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Properties


Property Name	Value
TranscriptId	580542
Track	FilteredModels2
ProteinId	580456

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:396495..398328 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580456	gene_2458	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580456	mRNA_2458-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2458	CDS_2458	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:396495..398328-
coding sequence from alignment at scaffold_5:396495..398328-

mRNA sequence

>mRNA_2458 ID=mRNA_2458|Name=jgi.p|Nanoce1779_2|580456|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp
CGGCGTGTCGTTGCAGCCAGCAGTGGGGGCGCCCAAGGTGTACGGAAACG
CGCTCTATTATCCTCGTCCGCCTCCCGGTCGGAGGACGAAAGGCAGCGGG
GTCGGCGCGATGAGCAACCACCCCTGCCCGAGACGGAAGACCCCTTCGTC
ATTCTAAACGTAAAGGTTGATGCCACGGAAGCGGAAATCAAGACCAGCTT
TTATCAGTTGGCCAAGCAGGTGCATCCGGACGCGGCTGCCCAAACCCACC
GAACGGATGCTTTGAAAGCAGCCGCGGACTTCCATAAGCTTGTAAGTGAC
AGACGGTAGGCATGCCTGGCTTTGCATATTTGTGTTTTCGTGGTGAATAA
TTTTGTCGGGCGTCTGTTTTCTTCCCATACTCATAGATGCGTGCCTATGA
GACCTTGATGGACCCAACCAAGCGCGCAGAGTACATCCTTAAGCGTCGAC
ATTACTCCCGCAATGGGACCTCAGCATCAGCAGCAGCAGCAGCAGCAGCG
GCGGCAGTAGCAGGTTTCTCCGACCAGAGCAGCCGAGATCCTAATCCTGT
GGATGCCTTCAACGCCTCTCTTCGCAAGGGCCGTCGTCGCAGCGCCCGGC
GCCGGGCAGGGATGTACAATGCTATTCATGAGGGTGAACACGATTGCGAG
GATGAGAACGAGGAAGGAAGAAGAAGAGCAGGAATTGCCCATGCTGCCGC
GAGAGGGGCCAAACCATGGGATGCCTTGACTCTGTCGGACCCGGGGTTGT
TTGGTCAGCTGCAGGAATCTTTTCACGATGCATTAATTTACTCTTACCTC
GGGCCGAGGGTCGCGGAGAACACAATCCCTTGGGCCTTTGAAGGCGAGGA
GAGACGGTCGCGTGGGAGAGTAACAGAGGAGAGAGGGGCGGAGATAGGGA
AGGAGGGACAGGAAAGTTTACATCCGCACATATTAGAGATGACTAGTGGG
CAACAGTTGTTGGGTTTTGTTGACGCTGCGCCGCTTTCTATAGACAGTTT
GTTAGAGGCGGGAAGAGAGGGGAAGAAGGAGGGAGAGAAAGAAAAGCAGG
GAGTGGAGGAAGAGGAAGGGCTGTCGTTGCGGTCGCAGCTAAGTGGCTTG
ATTTCAGCGACTGATAGAAAGAATTACATGCCCTTGAGGCTCGTGTGGCA
AGGACGGTGCTTGGCGCGAAGCACACGTCTGCGGGATCCGGTCGAAGGAG
AGGATGTGGTGGTAGTTCAGACGTACCTGGAAGGAGAGGTGCAGCACCAG
CACCAGCACCAGCAACAAGAGCAACGAGGAAAGTGCTATGTCATTCGAGG
CCTGGAATCGAAGCGGCTACTTTCCAGTCATCAAGTCCGCGATGCCGCCA
CTGGAGGCTTGACCCACGTCCTCGTCTCGCACCGAACCCCTCTAGTCTCT
CACTTGCACCTGCTCCAAGCGGAGGGAGGGGTGGAATGTCGAGTTACCAA
AGGCGACCTACAGTCCTATATTCCTTCAGAATATTGGCGGTTTCCCCCTC
GGAGTCAGGATCACGATGTGGGGAGTTGGTACATAGAGCGAGCCGACCCG
ACAGCGCCGGGGAGGAATGGCGGGAGGAGCGTAGCGGCGACGAGGATAGA
GAAACTGTTGCCGCCGGCGGTGATTGTCTTGGTGTGTGCATTCAAGACGC
TTGACAAGGAGGTGATAGAGGAGGAGAAGCGGCAGCGGTCGTCGAAGTTG
AAGGAGACAGTGAAGGGATGGGTGGGTAAGATGTTGTAAGGGAGGTGAAG
AGTCGGTGTGAAGAAACAGGAACATTTCTTCACTATTGAGAAGCGTGGGC
GACAGAACCAAAGATACGACGAATAGACTTGGAG

protein sequence of jgi.p|Nanoce1779_2|580456

>mRNA_2458-protein ID=mRNA_2458-protein|Name=jgi.p|Nanoce1779_2|580456|organism=Nannochloropsis oceanica|type=polypeptide|length=451bp
MRAYETLMDPTKRAEYILKRRHYSRNGTSASAAAAAAAAAVAGFSDQSSR
DPNPVDAFNASLRKGRRRSARRRAGMYNAIHEGEHDCEDENEEGRRRAGI
AHAAARGAKPWDALTLSDPGLFGQLQESFHDALIYSYLGPRVAENTIPWA
FEGEERRSRGRVTEERGAEIGKEGQESLHPHILEMTSGQQLLGFVDAAPL
SIDSLLEAGREGKKEGEKEKQGVEEEEGLSLRSQLSGLISATDRKNYMPL
RLVWQGRCLARSTRLRDPVEGEDVVVVQTYLEGEVQHQHQHQQQEQRGKC
YVIRGLESKRLLSSHQVRDAATGGLTHVLVSHRTPLVSHLHLLQAEGGVE
CRVTKGDLQSYIPSEYWRFPPRSQDHDVGSWYIERADPTAPGRNGGRSVA
ATRIEKLLPPAVIVLVCAFKTLDKEVIEEEKRQRSSKLKETVKGWVGKML
*

mRNA from alignment at scaffold_5:396495..398328-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2458 ID=mRNA_2458|Name=jgi.p|Nanoce1779_2|580456|organism=Nannochloropsis oceanica|type=mRNA|length=1834bp|location=Sequence derived from alignment at scaffold_5:396495..398328- (Nannochloropsis oceanica)
CGGCGTGTCGTTGCAGCCAGCAGTGGGGGCGCCCAAGGTGTACGGAAACG
CGCTCTATTATCCTCGTCCGCCTCCCGGTCGGAGGACGAAAGGCAGCGGG
GTCGGCGCGATGAGCAACCACCCCTGCCCGAGACGGAAGACCCCTTCGTC
ATTCTAAACGTAAAGGTTGATGCCACGGAAGCGGAAATCAAGACCAGCTT
TTATCAGTTGGCCAAGCAGGTGCATCCGGACGCGGCTGCCCAAACCCACC
GAACGGATGCTTTGAAAGCAGCCGCGGACTTCCATAAGCTTGTAAGTGAC
AGACGGTAGGCATGCCTGGCTTTGCATATTTGTGTTTTCGTGGTGAATAA
TTTTGTCGGGCGTCTGTTTTCTTCCCATACTCATAGATGCGTGCCTATGA
GACCTTGATGGACCCAACCAAGCGCGCAGAGTACATCCTTAAGCGTCGAC
ATTACTCCCGCAATGGGACCTCAGCATCAGCAGCAGCAGCAGCAGCAGCG
GCGGCAGTAGCAGGTTTCTCCGACCAGAGCAGCCGAGATCCTAATCCTGT
GGATGCCTTCAACGCCTCTCTTCGCAAGGGCCGTCGTCGCAGCGCCCGGC
GCCGGGCAGGGATGTACAATGCTATTCATGAGGGTGAACACGATTGCGAG
GATGAGAACGAGGAAGGAAGAAGAAGAGCAGGAATTGCCCATGCTGCCGC
GAGAGGGGCCAAACCATGGGATGCCTTGACTCTGTCGGACCCGGGGTTGT
TTGGTCAGCTGCAGGAATCTTTTCACGATGCATTAATTTACTCTTACCTC
GGGCCGAGGGTCGCGGAGAACACAATCCCTTGGGCCTTTGAAGGCGAGGA
GAGACGGTCGCGTGGGAGAGTAACAGAGGAGAGAGGGGCGGAGATAGGGA
AGGAGGGACAGGAAAGTTTACATCCGCACATATTAGAGATGACTAGTGGG
CAACAGTTGTTGGGTTTTGTTGACGCTGCGCCGCTTTCTATAGACAGTTT
GTTAGAGGCGGGAAGAGAGGGGAAGAAGGAGGGAGAGAAAGAAAAGCAGG
GAGTGGAGGAAGAGGAAGGGCTGTCGTTGCGGTCGCAGCTAAGTGGCTTG
ATTTCAGCGACTGATAGAAAGAATTACATGCCCTTGAGGCTCGTGTGGCA
AGGACGGTGCTTGGCGCGAAGCACACGTCTGCGGGATCCGGTCGAAGGAG
AGGATGTGGTGGTAGTTCAGACGTACCTGGAAGGAGAGGTGCAGCACCAG
CACCAGCACCAGCAACAAGAGCAACGAGGAAAGTGCTATGTCATTCGAGG
CCTGGAATCGAAGCGGCTACTTTCCAGTCATCAAGTCCGCGATGCCGCCA
CTGGAGGCTTGACCCACGTCCTCGTCTCGCACCGAACCCCTCTAGTCTCT
CACTTGCACCTGCTCCAAGCGGAGGGAGGGGTGGAATGTCGAGTTACCAA
AGGCGACCTACAGTCCTATATTCCTTCAGAATATTGGCGGTTTCCCCCTC
GGAGTCAGGATCACGATGTGGGGAGTTGGTACATAGAGCGAGCCGACCCG
ACAGCGCCGGGGAGGAATGGCGGGAGGAGCGTAGCGGCGACGAGGATAGA
GAAACTGTTGCCGCCGGCGGTGATTGTCTTGGTGTGTGCATTCAAGACGC
TTGACAAGGAGGTGATAGAGGAGGAGAAGCGGCAGCGGTCGTCGAAGTTG
AAGGAGACAGTGAAGGGATGGGTGGGTAAGATGTTGTAAGGGAGGTGAAG
AGTCGGTGTGAAGAAACAGGAACATTTCTTCACTATTGAGAAGCGTGGGC
GACAGAACCAAAGATACGACGAATAGACTTGGAG

Coding sequence (CDS) from alignment at scaffold_5:396495..398328-

>mRNA_2458 ID=mRNA_2458|Name=jgi.p|Nanoce1779_2|580456|organism=Nannochloropsis oceanica|type=CDS|length=1353bp|location=Sequence derived from alignment at scaffold_5:396495..398328- (Nannochloropsis oceanica)
ATGCGTGCCTATGAGACCTTGATGGACCCAACCAAGCGCGCAGAGTACAT
CCTTAAGCGTCGACATTACTCCCGCAATGGGACCTCAGCATCAGCAGCAG
CAGCAGCAGCAGCGGCGGCAGTAGCAGGTTTCTCCGACCAGAGCAGCCGA
GATCCTAATCCTGTGGATGCCTTCAACGCCTCTCTTCGCAAGGGCCGTCG
TCGCAGCGCCCGGCGCCGGGCAGGGATGTACAATGCTATTCATGAGGGTG
AACACGATTGCGAGGATGAGAACGAGGAAGGAAGAAGAAGAGCAGGAATT
GCCCATGCTGCCGCGAGAGGGGCCAAACCATGGGATGCCTTGACTCTGTC
GGACCCGGGGTTGTTTGGTCAGCTGCAGGAATCTTTTCACGATGCATTAA
TTTACTCTTACCTCGGGCCGAGGGTCGCGGAGAACACAATCCCTTGGGCC
TTTGAAGGCGAGGAGAGACGGTCGCGTGGGAGAGTAACAGAGGAGAGAGG
GGCGGAGATAGGGAAGGAGGGACAGGAAAGTTTACATCCGCACATATTAG
AGATGACTAGTGGGCAACAGTTGTTGGGTTTTGTTGACGCTGCGCCGCTT
TCTATAGACAGTTTGTTAGAGGCGGGAAGAGAGGGGAAGAAGGAGGGAGA
GAAAGAAAAGCAGGGAGTGGAGGAAGAGGAAGGGCTGTCGTTGCGGTCGC
AGCTAAGTGGCTTGATTTCAGCGACTGATAGAAAGAATTACATGCCCTTG
AGGCTCGTGTGGCAAGGACGGTGCTTGGCGCGAAGCACACGTCTGCGGGA
TCCGGTCGAAGGAGAGGATGTGGTGGTAGTTCAGACGTACCTGGAAGGAG
AGGTGCAGCACCAGCACCAGCACCAGCAACAAGAGCAACGAGGAAAGTGC
TATGTCATTCGAGGCCTGGAATCGAAGCGGCTACTTTCCAGTCATCAAGT
CCGCGATGCCGCCACTGGAGGCTTGACCCACGTCCTCGTCTCGCACCGAA
CCCCTCTAGTCTCTCACTTGCACCTGCTCCAAGCGGAGGGAGGGGTGGAA
TGTCGAGTTACCAAAGGCGACCTACAGTCCTATATTCCTTCAGAATATTG
GCGGTTTCCCCCTCGGAGTCAGGATCACGATGTGGGGAGTTGGTACATAG
AGCGAGCCGACCCGACAGCGCCGGGGAGGAATGGCGGGAGGAGCGTAGCG
GCGACGAGGATAGAGAAACTGTTGCCGCCGGCGGTGATTGTCTTGGTGTG
TGCATTCAAGACGCTTGACAAGGAGGTGATAGAGGAGGAGAAGCGGCAGC
GGTCGTCGAAGTTGAAGGAGACAGTGAAGGGATGGGTGGGTAAGATGTTG
TAA

Synonyms

Publications