jgi.p|Nanoce1779_2|580451, mRNA_2457 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580451
Unique Name	mRNA_2457
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	3205
Alignment location	scaffold_5:392901..396479 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	580537
Track	FilteredModels2
ProteinId	580451

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:392901..396479 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580451	gene_2457	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580451	mRNA_2457-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2457	CDS_2457	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:392901..396479+
coding sequence from alignment at scaffold_5:392901..396479+

mRNA sequence

>mRNA_2457 ID=mRNA_2457|Name=jgi.p|Nanoce1779_2|580451|organism=Nannochloropsis oceanica|type=mRNA|length=3205bp
CAGATCAAGCTGGGAAGCTAGGAAATGGAGAGTTACCCACACAAATCCCA
TTCAGTCCATTCCCTCCCAACGGACCTGGTCGCCGTGAGAGATTACTCGA
AGGCATTTACCACTTAAGCTCGTGCAGTGATAGCTGTGCCCAATACTCCA
GCTACACGGTACATTGCACAAACAGTGTGAGAGACACAGTGGGGCTAAAT
CCTGTCTTACCTGATTCTCCGCTCTGGCCTTCAGCAAGTGCTGCATGTTT
CCCATCTGTTGCTCGAGCTTGGGGAGCACTTCTTGAGCTTCTTCGATACC
AACCATATCCTTGACACGTCGGGTGCATCGTTGCACGCTTTCTAATTTCG
CTTTCAACGCCACACAGCGGACTTCACTTTCCTCCTTGTCCTCTTCCTCC
TCACATTCTTTTTGCCCCTGACTTTTGCTGCCGTCCATACTCTCGCGGGC
CTTGCTCTGTGGTTTCTCATGGTCATAGCGTCGCTTCCGCAGCTGAAGCT
TGATGAGCTGTTGCTGCTCCCGTAGTGCGGCTTTTCGTCGTGATCTGGCT
TTGCCTTACTCGGCGCGTTGTCTAATAAGGTGTTGCTGGGCTACTTACTG
CGCGTGATTGGCATCATCTATGGTTTATGTAGGTCGTGCTCCTTCAGCTG
CACAGTGCGCTCCAACGAAGAAATCTCCTGGTCAAAGCTGAGCCTTTCGT
CCTGCAAAGAAGATTGCAGAATTTACATAAGAATTATGAGAGTTAATCAT
GTGAGCTACTAGTCATGAACATAAGTAGTCGCCCTCTGGTTGACAGGCCT
GGCATGCCCCGATGGGTGGGCGGATCTTGCCATGCCCGGTACTGAACCTG
TCGGGCCAAAGTCCCGTATTCCTTCCAAATATCTCCTTTCCCGCGTAGTA
ACAGTCTAACCTTGAGATGCTTGACAATTTGGTCGTATGTATGGACAATG
AAATGTGCTTCACGACACCGACTAAGCGTCTTCTCGATCTGGCCATTCAA
TAACTTGAATGTGATCGTCCGGCGCACCAGCCCCTGAAGGCAGGGGGGTG
AGAGCGTCCATGCCCCCAGCTCCATTGGATCCCGACAACTCCAATTCCAA
AGTTCGCACTTGATCCTGTTTGCATATTTTGTAAAATTACCATTATTTCC
ATGGTTTAGTTGTTCCATCGAGACTGAAACCTCAGATCAATTTGGCAAGC
AGTCCACGAAGCATTCAAGTGCGTGAGAAATTGGCGTGCTGGGCCTAGAG
ATTCCGCAAACAGAACTAATAAGTCTCGATTGTGCATAAGAATGCAAGGC
CTTATTTTTCTATCAATCTTTCCCTGCACGTACTCGCAGCTCCTCAAGAA
ACGTTTCCTCCCGCATGGCCTGCGCCTTGAGATCGTTCCCTTCTTTGCGA
GCCAGCTAGACCGCGGCACGCAGGAACTCTTGAGTGGATTTGTTGTCCTC
CTTGGGGATGGTTGTCTTTTCCGACGATACGGGTCATTAGAGTGGATGAA
GAAATCATGAGAACCTCAAGAGAGCCAACAGAATGCCGGGGCGCATGGGA
TGCAGTATGGCAAGCCAGAACAGAAATCACCAGGGGCACCTTTTTCAGCA
ACTGCGTGCGGAGCTTTCGGATTTCTTCTTTCAAATGTTGAATCTCCTCT
CGCTGGGCCTTCTTGCTTCCGTCGAAAAACTCAATGTTGGATTTGTGGTC
ATTTTCTAGAACGTGGATTTTCTTCGTTAAATCCATATATTCGTTGTATA
AAGGGTACCTGTGCTGGAAAAGGGAGGGCTGGAAGGCATAACATTGGCAC
TCGGGTGGAATGTGCGGAACTGGAATATAACGGCTTTTCGACGTGTGCGC
AGCATCTCCCGCCCCCTACCGTCTATCCCACCCTACGTACCAAATGTGCC
CCCACGCCTCCGACTATTCTCTCGCAGCCACAGGCATCATAGCATTGTCA
CCATGGTGACACAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACA
CAGGCCCTGCATCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTA
TGCCTCGTTATGCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCT
CGTCGTCGCCCTCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCC
GCTAGCGTCTCCATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCA
CCAAAGAGCATCAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAAC
GGCAGAGGGCCAGCGATACCGACGTCGATAAACCTCAACACCGCGCTCCT
CTATCGCCTCTGCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTG
GAAGCCTCTAGCCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCA
TCTCTAGTGCGGGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGA
GGAAAAGGGACCAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGA
AGGGGAGTTGGGCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGT
GGCTGCAGACCCGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCC
AAGCGTGCCAGCACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTC
CCCGCGGACTGCCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTT
CCCGAAGCAGCATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACA
GGCTCCAGCAATACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTT
TTTTTCGCCACGACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTA
ATAGTGGTGGACTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGG
CCAGTAACGGGGACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATC
TAAAAGCAGCCTCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGA
TGAACAAGGGGTTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGT
ATATTTTCACCGAAAGCTCATTGAAATTGATCTCTAGGGTATGTGAAACA
TTAGGAAAAAGGAAGGACAGAGGGAGGAAAGTACGTGCCTCGGGTTGCGT
GCATGGCATGTAAAAAATAAGGACAAAGAAAGGAATTATGGAACGATTTC
AAAAA

protein sequence of jgi.p|Nanoce1779_2|580451

>mRNA_2457-protein ID=mRNA_2457-protein|Name=jgi.p|Nanoce1779_2|580451|organism=Nannochloropsis oceanica|type=polypeptide|length=374bp
MVTQDGSIPATESAFTQALHQPAVVKDQFDLLYASLCQEGNNDDDGSSCS
SSPSVCPPRQRHRRRAASVSINAEESEDEEDKHQRASATAPVKATATKKR
QRASDTDVDKPQHRAPLSPLRPRYDEEELRHSWKPLAPAGDDYMDLSATI
SSAGRRKAAAAAAPARGKGTKATAGAKGRCSGEGELGNFTHSVGPLRGEW
LQTRKAVVSERTSVVPKRASTNITAISTGRAISPRTADATPSTTAKASSS
RSSIGMHSAARSSGSTGSSNTNTSQHSRATSTFFSPRPRFLGLSPESGGN
SGGLGGSGGSVGCKKRPVTGTARATTMGVGSASKSSLTGGTVSSSGGNGM
NKGLPSAALFDVLKKSIFSPKAH*

mRNA from alignment at scaffold_5:392901..396479+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2457 ID=mRNA_2457|Name=jgi.p|Nanoce1779_2|580451|organism=Nannochloropsis oceanica|type=mRNA|length=3579bp|location=Sequence derived from alignment at scaffold_5:392901..396479+ (Nannochloropsis oceanica)
CAGATCAAGCTGGGAAGCTAGGAAATGGAGAGTTACCCACACAAATCCCA
TTCAGTCCATTCCCTCCCAACGGACCTGGTCGCCGTGAGGCAAGTATTCC
CGCGTCTCCACTTCCACTTTGAGAGCGTCTCGTTTGTCTTGGAGACGGGT
TTCAATCGGCCCTGATTACGTCGAAACATGATTGTTAATTCATCTGTCAT
TTGACCCTCTCTTTATATTTCTATTCTTGCGTTGTAGAGATTACTCGAAG
GCATTTACCACTTAAGCTCGTGCAGTGATAGCTGTGCCCAATACTCCAGC
TACACGGTACATTGCACAAACAGTGTGAGAGACACAGTGGGGCTAAATCC
TGTCTTACCTGATTCTCCGCTCTGGCCTTCAGCAAGTGCTGCATGTTTCC
CATCTGTTGCTCGAGCTTGGGGAGCACTTCTTGAGCTTCTTCGATACCAA
CCATATCCTTGACACGTCGGGTGCATCGTTGCACGCTTTCTAATTTCGCT
TTCAACGCCACACAGCGGACTTCACTTTCCTCCTTGTCCTCTTCCTCCTC
ACATTCTTTTTGCCCCTGACTTTTGCTGCCGTCCATACTCTCGCGGGCCT
TGCTCTGTGGTTTCTCATGGTCATAGCGTCGCTTCCGCAGCTGAAGCTTG
ATGAGCTGTTGCTGCTCCCGTAGTGCGGCTTTTCGTCGTGATCTGGCTTT
GCCTTACTCGGCGCGTTGTCTAATAAGGTGTTGCTGGGCTACTTACTGCG
CGTGATTGGCATCATCTATGGTTTATGTAGGTATGTATTCCCGTATCGAG
ATTCTGAGTGCGCTTGTCGTGCGCGGTCGCATGTGTGGTATGACATGCGT
ACACCTGAAGCTAAAGAGCCGTTTCTGATTCTTGCCACTTCGTTACATAC
TGAATAACTGCATCAATTCCTCCAGGTCGTGCTCCTTCAGCTGCACAGTG
CGCTCCAACGAAGAAATCTCCTGGTCAAAGCTGAGCCTTTCGTCCTGCAA
AGAAGATTGCAGAATTTACATAAGAATTATGAGAGTTAATCATGTGAGCT
ACTAGTCATGAACATAAGTAGTCGCCCTCTGGTTGACAGGCCTGGCATGC
CCCGATGGGTGGGCGGATCTTGCCATGCCCGGTACTGAACCTGTCGGGCC
AAAGTCCCGTATTCCTTCCAAATATCTCCTTTCCCGCGTAGTAACAGTCT
AACCTTGAGATGCTTGACAATTTGGTCGTATGTATGGACAATGAAATGTG
CTTCACGACACCGACTAAGCGTCTTCTCGATCTGGCCATTCAATAACTTG
AATGTGATCGTCCGGCGCACCAGCCCCTGAAGGCAGGGGGGTGAGAGCGT
CCATGCCCCCAGCTCCATTGGATCCCGACAACTCCAATTCCAAAGTTCGC
ACTTGATCCTGTTTGCATATTTTGTAAAATTACCATTATTTCCATGGTTT
AGTTGTTCCATCGAGACTGAAACCTCAGATCAATTTGGCAAGCAGTCCAC
GAAGCATTCAAGTGCGTGAGAAATTGGCGTGCTGGGCCTAGAGATTCCGC
AAACAGAACTAATAAGTCTCGATTGTGCATAAGAATGCAAGGCCTTATTT
TTCTATCAATCTTTCCCTGCACGTACTCGCAGCTCCTCAAGAAACGTTTC
CTCCCGCATGGCCTGCGCCTTGAGATCGTTCCCTTCTTTGCGAGCCAGCT
AGACCGCGGCACGCAGGAACTCTTGAGTGGATTTGTTGTCCTCCTTGGGG
ATGGTTGTCTTTTCCGACGATACGGGTCATTAGAGTGGATGAAGAAATCA
TGAGAACCTCAAGAGAGCCAACAGAATGCCGGGGCGCATGGGATGCAGTA
TGGCAAGCCAGAACAGAAATCACCAGGGGCACCTTTTTCAGCAACTGCGT
GCGGAGCTTTCGGATTTCTTCTTTCAAATGTTGAATCTCCTCTCGCTGGG
CCTTCTTGCTTCCGTCGAAAAACTCAATGTTGGATTTGTGGTCATTTTCT
AGGTACGTAGGGGTCAGGAAGGAAGAAGGGCTGTGAGTGGGATGCGAGCG
CGGGCGTCCAACAGACGATACAGACTTACGCAGAACGTGGATTTTCTTCG
TTAAATCCATATATTCGTTGTATAAAGGGTACCTGTGCTGGAAAAGGGAG
GGCTGGAAGGCATAACATTGGCACTCGGGTGGAATGTGCGGAACTGGAAT
ATAACGGCTTTTCGACGTGTGCGCAGCATCTCCCGCCCCCTACCGTCTAT
CCCACCCTACGTACCAAATGTGCCCCCACGCCTCCGACTATTCTCTCGCA
GCCACAGGCATCATAGCATTGTCACCATGGTGACACAAGACGGCAGCATC
CCGGCGACGGAAAGCGCCTTTACACAGGCCCTGCATCAACCAGCTGTCGT
TAAGGACCAGTTTGACCTGCTGTATGCCTCGTTATGCCAGGAAGGGAACA
ACGATGACGACGGTAGCAGTTGCTCGTCGTCGCCCTCGGTATGTCCTCCG
CGACAGCGACATAGAAGAAGAGCCGCTAGCGTCTCCATCAATGCAGAGGA
AAGCGAAGACGAAGAAGACAAGCACCAAAGAGCATCAGCCACAGCACCAG
TCAAAGCTACCGCCACCAAGAAACGGCAGAGGGCCAGCGATACCGACGTC
GATAAACCTCAACACCGCGCTCCTCTATCGCCTCTGCGACCACGATACGA
CGAAGAGGAGTTGAGGCATTCCTGGAAGCCTCTAGCCCCAGCCGGGGATG
ATTACATGGACCTGTCCGCTACCATCTCTAGTGCGGGCCGACGAAAAGCA
GCAGCAGCTGCAGCTCCAGCACGAGGAAAAGGGACCAAGGCCACGGCGGG
CGCAAAGGGAAGATGCAGCGGGGAAGGGGAGTTGGGCAATTTCACTCATA
GCGTCGGGCCGCTGAGGGGCGAGTGGCTGCAGACCCGCAAGGCGGTCGTG
TCTGAGCGCACTTCAGTCGTGCCCAAGCGTGCCAGCACTAATATTACTGC
TATCTCCACTGGTCGCGCAATCTCCCCGCGGACTGCCGATGCCACGCCAA
GTACGACTGCGAAGGCCTCTAGTTCCCGAAGCAGCATCGGCATGCATTCG
GCCGCCCGCTCTAGTGGGTCGACAGGCTCCAGCAATACCAATACCAGCCA
ACATTCTAGAGCAACAAGCACGTTTTTTTCGCCACGACCGCGTTTCTTGG
GCCTATCTCCTGAGAGCGGTGGTAATAGTGGTGGACTGGGAGGGAGTGGA
GGGTCTGTTGGATGCAAGAAAAGGCCAGTAACGGGGACCGCGAGAGCGAC
GACGATGGGCGTGGGTTCGGCATCTAAAAGCAGCCTCACAGGAGGGACGG
TGTCTTCGAGTGGTGGGAACGGGATGAACAAGGGGTTGCCGTCGGCGGCG
TTGTTTGATGTGTTGAAGAAAAGTATATTTTCACCGAAAGCTCATTGAAA
TTGATCTCTAGGGTATGTGAAACATTAGGAAAAAGGAAGGACAGAGGGAG
GAAAGTACGTGCCTCGGGTTGCGTGCATGGCATGTAAAAAATAAGGACAA
AGAAAGGAATTATGGAACGATTTCAAAAA

Coding sequence (CDS) from alignment at scaffold_5:392901..396479+

>mRNA_2457 ID=mRNA_2457|Name=jgi.p|Nanoce1779_2|580451|organism=Nannochloropsis oceanica|type=CDS|length=1122bp|location=Sequence derived from alignment at scaffold_5:392901..396479+ (Nannochloropsis oceanica)
ATGGTGACACAAGACGGCAGCATCCCGGCGACGGAAAGCGCCTTTACACA
GGCCCTGCATCAACCAGCTGTCGTTAAGGACCAGTTTGACCTGCTGTATG
CCTCGTTATGCCAGGAAGGGAACAACGATGACGACGGTAGCAGTTGCTCG
TCGTCGCCCTCGGTATGTCCTCCGCGACAGCGACATAGAAGAAGAGCCGC
TAGCGTCTCCATCAATGCAGAGGAAAGCGAAGACGAAGAAGACAAGCACC
AAAGAGCATCAGCCACAGCACCAGTCAAAGCTACCGCCACCAAGAAACGG
CAGAGGGCCAGCGATACCGACGTCGATAAACCTCAACACCGCGCTCCTCT
ATCGCCTCTGCGACCACGATACGACGAAGAGGAGTTGAGGCATTCCTGGA
AGCCTCTAGCCCCAGCCGGGGATGATTACATGGACCTGTCCGCTACCATC
TCTAGTGCGGGCCGACGAAAAGCAGCAGCAGCTGCAGCTCCAGCACGAGG
AAAAGGGACCAAGGCCACGGCGGGCGCAAAGGGAAGATGCAGCGGGGAAG
GGGAGTTGGGCAATTTCACTCATAGCGTCGGGCCGCTGAGGGGCGAGTGG
CTGCAGACCCGCAAGGCGGTCGTGTCTGAGCGCACTTCAGTCGTGCCCAA
GCGTGCCAGCACTAATATTACTGCTATCTCCACTGGTCGCGCAATCTCCC
CGCGGACTGCCGATGCCACGCCAAGTACGACTGCGAAGGCCTCTAGTTCC
CGAAGCAGCATCGGCATGCATTCGGCCGCCCGCTCTAGTGGGTCGACAGG
CTCCAGCAATACCAATACCAGCCAACATTCTAGAGCAACAAGCACGTTTT
TTTCGCCACGACCGCGTTTCTTGGGCCTATCTCCTGAGAGCGGTGGTAAT
AGTGGTGGACTGGGAGGGAGTGGAGGGTCTGTTGGATGCAAGAAAAGGCC
AGTAACGGGGACCGCGAGAGCGACGACGATGGGCGTGGGTTCGGCATCTA
AAAGCAGCCTCACAGGAGGGACGGTGTCTTCGAGTGGTGGGAACGGGATG
AACAAGGGGTTGCCGTCGGCGGCGTTGTTTGATGTGTTGAAGAAAAGTAT
ATTTTCACCGAAAGCTCATTGA

Synonyms

Publications