jgi.p|Nanoce1779_2|580444, mRNA_2454 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580444
Unique Name	mRNA_2454
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1277
Alignment location	scaffold_5:388085..390260 +

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Properties


Property Name	Value
TranscriptId	580530
Track	FilteredModels2
ProteinId	580444

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:388085..390260 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580444	gene_2454	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580444	mRNA_2454-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2454	CDS_2454	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:388085..390260+
coding sequence from alignment at scaffold_5:388085..390260+

mRNA sequence

>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Nanoce1779_2|580444|organism=Nannochloropsis oceanica|type=mRNA|length=1277bp
ACAGGCACTCGTCTCGCACATTCCTGTTCGAACACCCCCTACAGTCCAAG
ATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGTGGCACG
TTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCG
ACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGC
CCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGT
GTCCGACGTGGAAGGCCGCATATTTATCTTGATTTCCGAGCGGTCATATC
CCGTCCGTGCCGCAAATGCGTGCTTGGATGAGCTCCAGAGATCGTTCCTT
ATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAA
GACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTAT
TGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAG
TTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTT
GGAGAATATTGAGAGTGCCGCGGAGGATCTGCAAGCTCAGGCGGGCATGT
TTAAGAAGAATGCCACCACCCTTAAGAAGCAAATGTGGTGGAAGCAACTC
CGAATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTTGGTGAT
AATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCCACAAGA
GAAATAAAATCTAAGGAGGAATCAGATTGAACTTTTGTAGGAGGGATTTG
AATTAGGGAAAGAGGATAATCAATCGAGCAAACACGAAACCCAGAGAAAG
AATCTGTTCGGCTCGAGAAGGAGGAGGAAAAGGCGGAGGAGGAAGAGGAA
GGGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCCACAAGGAAAGA
AAACGGAAGAAGGAGCAGGAAACCGGCGGAAAGACGAAGCGAGGGCAGCT
GTATCATTGTATAGATTCCATCATCAGCAGCAAAAAGAAAAGAGGACGGG
GAAAAAAGCGGAAGGCAAACTGACATGCACGTGGGGCGCTGCAGTCTCAC
CCCTCCTCCCTTCCCTCCTCCCTCCCTGCCTCTCTCTTTCATTGCCCTGC
GACGTAAGCCATCCAGAAAGGATTAACCACAGACTAAAAATAGTCGTGAG
AGTGTTTTGAGCGACCGAGACGGACTTAGATAAATGTAAGAAAAATAGGT
AAAGCATCACCAAGCGCAAAACCATGA

protein sequence of jgi.p|Nanoce1779_2|580444

>mRNA_2454-protein ID=mRNA_2454-protein|Name=jgi.p|Nanoce1779_2|580444|organism=Nannochloropsis oceanica|type=polypeptide|length=238bp
MAEHRSSGNIQFLGVARLQDRAIVASHAYNTIIDLNGVKEVLTSDQLSVR
PGVYFSFASGGSAWHLVSDVEGRIFILISERSYPVRAANACLDELQRSFL
IKTGTKSLEVKEKGLDKTCGEMLRKLCEKYDDLLQVDKLAAVMNKVDSVK
LVLQENVQVALANCVTLENIESAAEDLQAQAGMFKKNATTLKKQMWWKQL
RMKLLVALVIVAILLVIIIPIAVKSKRFHDTHKRNKI*

mRNA from alignment at scaffold_5:388085..390260+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Nanoce1779_2|580444|organism=Nannochloropsis oceanica|type=mRNA|length=2176bp|location=Sequence derived from alignment at scaffold_5:388085..390260+ (Nannochloropsis oceanica)
ACAGGCACTCGTCTCGCACATTCCTGTTCGAACACCCCCTACAGTCCAAG
ATGGCAGAGCACAGATCCTCGGGCAACATCCAGTAAGTGTGACGCCGACA
TGAGGCGCGTCTGTCTCTTAAACCTGCCATGTCAGCACTCCGTTCCGGCA
GCCCTTGCCATTAGTGCAGCACCTAGAGAGGAGAGGAGAGCGGTATGGAG
CAGTTTTGTCGACAATGCCAAACGGCGCCTCTCATTCATTTCCCTCTCCA
CTTCCCCACCCCAATTTGCAGGTTCCTTGGTGTGGCACGTTTGCAAGACC
GGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCGACTTGAACGGT
GTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGCCCAGGGGTATA
TTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGTGTCCGACGTGG
AAGGCCGCATATTTATCTTGATTTCCGAGCGGTCATATCCCGTCCGTGCC
GCAAATGCGTGCTTGGATGAGCTCCAGAGATCGGTACGTGGGTAGTTGAG
CTGTGGTGAGAATGTTCGCCCCTCCCCCGCCCCCTTTCAAACGTCATCCG
TGTCGGCGTTACGTTCTCTCTTTTTCCAGGTCTCTGCCCGCTGCCTCATA
CTTATATCCCTTCTATGTTTTGTCTACTCGACAGTTCCTTATCAAGACGG
GCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAAGACATGTGGG
GAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTATTGCAGGTGGA
TAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAGTTGGTGCTGC
AGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTTGGAGAATATT
GAGAGTGCCGCGGGTATGTACATATGTACAGGGGGGGGAAAGAGGAAAAG
GGGAAGTCTTTTTTTTAGATTTAATCTCTGGGTGATCCCACAATGATTTT
GAGTGCTTGCTTGATTTGGGCTTGGATTTGGTTGCTAAGTGAGGGGAAAG
AAGGAGGGTGGGAAGGAGGGAGCTTGCTTGAATTCATTCTTTCCGTCTTC
CTTTTCTGGATGCCTTGGGGTCTTTTAATTTTCACCTTTGGCTGACTTGT
TAATGCCCTTCTTATGGACAATTGCAATATAGAGGATCTGCAAGCTCAGG
CGGGCATGTTTAAGAAGAATGCCACCACCCTTAAGAAGCAAATGTGGTGG
AAGCAACTCCGAGTACGTACCCCTCCCTCCCTCCCTCCCTCCCTCCTGAT
CTGATATCCCATCCCGTCCGTTTGAACGCGTGACTAAAGCAGTGCAATCC
GCTCTAAAAGCATCACAACGAGCCCGATCCTTCTCCCTCCCTCCTCACTT
GACTTCTCCCTCCCTCCTCTCCATTCCTCCCTCCCTCCACATGCTACCGA
AGAAGCAGGCCTTGGCCAAGCATCACTTTGTTGGTCCTCCCAACCTACAC
TCACCCTCCCTCCATCCCTCCCTCTCACCCTTACTCCCCAATCACTCAAA
AGATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTTGGTGATA
ATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCCACAAGAG
AAATAAAATCTAAGGAGGAATCAGATTGAACTTTTGTAGGAGGGATTTGA
ATTAGGGAAAGAGGATAATCAATCGAGCAAACACGAAACCCAGAGAAAGA
ATCTGTTCGGCTCGAGAAGGAGGAGGAAAAGGCGGAGGAGGAAGAGGAAG
GGGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGTCCACAAGGAAAGAA
AACGGAAGAAGGAGCAGGAAACCGGCGGAAAGACGAAGCGAGGGCAGCTG
TATCATTGTATAGATTCCATCATCAGCAGCAAAAAGAAAAGAGGACGGGG
AAAAAAGCGGAAGGCAAACTGACATGCACGTGGGGCGCTGCAGTCTCACC
CCTCCTCCCTTCCCTCCTCCCTCCCTGCCTCTCTCTTTCATTGCCCTGCG
ACGTAAGCCATCCAGAAAGGATTAACCACAGACTAAAAATAGTCGTGAGA
GTGTTTTGAGCGACCGAGACGGACTTAGATAAATGTAAGAAAAATAGGTA
AAGCATCACCAAGCGCAAAACCATGA

Coding sequence (CDS) from alignment at scaffold_5:388085..390260+

>mRNA_2454 ID=mRNA_2454|Name=jgi.p|Nanoce1779_2|580444|organism=Nannochloropsis oceanica|type=CDS|length=3570bp|location=Sequence derived from alignment at scaffold_5:388085..390260+ (Nannochloropsis oceanica)
ATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGTGGCACG
TTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCG
ACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGC
CCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGT
GTCCGACGTGGAAGGCCGCATATTTATCTTGATTTCCGAGCGGTCATATC
CCGTCCGTGCCGCAAATGCGTGCTTGGATGAGCTCCAGAGATCGTTCCTT
ATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAA
GACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTAT
TGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAG
TTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTT
GGAGAATATTGAGAGTGCCGCGGAGGATCTGCAAGCTCAGGCGGGCATGT
TTAAGAAGAATGCCACCACCCTTAAGAAGCAAATGTGGTGGAAGCAACTC
CGAATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTTGGTGAT
AATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCCACAAGA
GAAATAAAATCTAAATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTC
CTTGGTGTGGCACGTTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTA
CAACACGATCATCGACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACC
AGCTTAGCGTCCGCCCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCA
GCATGGCATCTGGTGTCCGACGTGGAAGGCCGCATATTTATCTTGATTTC
CGAGCGGTCATATCCCGTCCGTGCCGCAAATGCGTGCTTGGATGAGCTCC
AGAGATCGTTCCTTATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAG
AAGGGCCTGGACAAGACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAA
GTATGATGATTTATTGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAG
TAGATTCTGTCAAGTTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCG
AATTGCGTAACGTTGGAGAATATTGAGAGTGCCGCGGAGGATCTGCAAGC
TCAGGCGGGCATGTTTAAGAAGAATGCCACCACCCTTAAGAAGCAAATGT
GGTGGAAGCAACTCCGAATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCT
ATTCTCTTGGTGATAATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCA
CGACACCCACAAGAGAAATAAAATCTAAATGGCAGAGCACAGATCCTCGG
GCAACATCCAGTTCCTTGGTGTGGCACGTTTGCAAGACCGGGCAATCGTC
GCCAGCCATGCCTACAACACGATCATCGACTTGAACGGTGTCAAGGAAGT
GCTTACGAGCGACCAGCTTAGCGTCCGCCCAGGGGTATATTTCTCTTTTG
CTTCCGGTGGATCAGCATGGCATCTGGTGTCCGACGTGGAAGGCCGCATA
TTTATCTTGATTTCCGAGCGGTCATATCCCGTCCGTGCCGCAAATGCGTG
CTTGGATGAGCTCCAGAGATCGTTCCTTATCAAGACGGGCACCAAGAGTT
TGGAAGTGAAAGAGAAGGGCCTGGACAAGACATGTGGGGAGATGCTGCGG
AAGCTGTGCGAGAAGTATGATGATTTATTGCAGGTGGATAAGCTCGCCGC
GGTGATGAATAAAGTAGATTCTGTCAAGTTGGTGCTGCAGGAGAACGTGC
AGGTGGCGTTGGCGAATTGCGTAACGTTGGAGAATATTGAGAGTGCCGCG
GAGGATCTGCAAGCTCAGGCGGGCATGTTTAAGAAGAATGCCACCACCCT
TAAGAAGCAAATGTGGTGGAAGCAACTCCGAATGAAGCTGTTAGTGGCTC
TGGTCATCGTGGCTATTCTCTTGGTGATAATTATCCCCATCGCTGTGAAA
AGTAAGCGGTTCCACGACACCCACAAGAGAAATAAAATCTAAATGGCAGA
GCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGTGGCACGTTTGCAAG
ACCGGGCAATCGTCGCCAGCCATGCCTACAACACGATCATCGACTTGAAC
GGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGCGTCCGCCCAGGGGT
ATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCATCTGGTGTCCGACG
TGGAAGGCCGCATATTTATCTTGATTTCCGAGCGGTCATATCCCGTCCGT
GCCGCAAATGCGTGCTTGGATGAGCTCCAGAGATCGTTCCTTATCAAGAC
GGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCTGGACAAGACATGTG
GGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATGATTTATTGCAGGTG
GATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCTGTCAAGTTGGTGCT
GCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGTAACGTTGGAGAATA
TTGAGAGTGCCGCGGAGGATCTGCAAGCTCAGGCGGGCATGTTTAAGAAG
AATGCCACCACCCTTAAGAAGCAAATGTGGTGGAAGCAACTCCGAATGAA
GCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTTGGTGATAATTATCC
CCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCCACAAGAGAAATAAA
ATCTAAATGGCAGAGCACAGATCCTCGGGCAACATCCAGTTCCTTGGTGT
GGCACGTTTGCAAGACCGGGCAATCGTCGCCAGCCATGCCTACAACACGA
TCATCGACTTGAACGGTGTCAAGGAAGTGCTTACGAGCGACCAGCTTAGC
GTCCGCCCAGGGGTATATTTCTCTTTTGCTTCCGGTGGATCAGCATGGCA
TCTGGTGTCCGACGTGGAAGGCCGCATATTTATCTTGATTTCCGAGCGGT
CATATCCCGTCCGTGCCGCAAATGCGTGCTTGGATGAGCTCCAGAGATCG
TTCCTTATCAAGACGGGCACCAAGAGTTTGGAAGTGAAAGAGAAGGGCCT
GGACAAGACATGTGGGGAGATGCTGCGGAAGCTGTGCGAGAAGTATGATG
ATTTATTGCAGGTGGATAAGCTCGCCGCGGTGATGAATAAAGTAGATTCT
GTCAAGTTGGTGCTGCAGGAGAACGTGCAGGTGGCGTTGGCGAATTGCGT
AACGTTGGAGAATATTGAGAGTGCCGCGGAGGATCTGCAAGCTCAGGCGG
GCATGTTTAAGAAGAATGCCACCACCCTTAAGAAGCAAATGTGGTGGAAG
CAACTCCGAATGAAGCTGTTAGTGGCTCTGGTCATCGTGGCTATTCTCTT
GGTGATAATTATCCCCATCGCTGTGAAAAGTAAGCGGTTCCACGACACCC
ACAAGAGAAATAAAATCTAA

Synonyms

Publications