jgi.p|Nanoce1779_2|580422, mRNA_2452 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580422
Unique NamemRNA_2452
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length760
Alignment locationscaffold_5:383153..384477 -

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Properties
Property NameValue
TranscriptId580508
TrackFilteredModels2
ProteinId580422
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:383153..384477 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580422gene_2452Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580422mRNA_2452-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2452CDS_2452Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2452 ID=mRNA_2452|Name=jgi.p|Nanoce1779_2|580422|organism=Nannochloropsis oceanica|type=mRNA|length=760bp
ACAGCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGC
CGTGGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCCCGCGGCTGC
GGACCCGGCCGCCGGCGACAACCTGATCCTGAACTTCTCTCTTCCGGCTG
CCAGCATCTACCGCAACAAGCCTGTGGCATCTGTCGTCATCCCGGGCCTG
GCGGGCGAGTACGGCGTGACAAAGAACCACTCCCCCGTTATTGCCGAGCT
TAAAGCGGGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGA
AGTACTTTGTCAGCGGAGGCTTCGCCCTCACCCACGCCAACTCCGTGACG
GATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATCGACCAGGACGA
GATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAATGCCGCTCCGG
AGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAGAGGTGGCCAAA
TCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGAGCGAGGGAAGG
AGGGATTGAAGGAGAGGGAGGAGGGAGGAGTGGGATGATATAATAGTGAG
GAGGAGCAAAAGGTAGTTCATTTTTTTGGGTGTCGGATGCGTATATTGTG
TTGCTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGGATATTGCTGGAGGAA
AAGAGGAAGAAAAAGAAGAAAAATGAAGATGAAAAAACAAGCGAAAAGAG
AGGTAGAGAG
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protein sequence of jgi.p|Nanoce1779_2|580422

>mRNA_2452-protein ID=mRNA_2452-protein|Name=jgi.p|Nanoce1779_2|580422|organism=Nannochloropsis oceanica|type=polypeptide|length=175bp
MLAARGIFKAVARRGVHTTRVLASTKPAAADPAAGDNLILNFSLPAASIY
RNKPVASVVIPGLAGEYGVTKNHSPVIAELKAGVVQIVHEPGQAPEKYFV
SGGFALTHANSVTDIAVVEAAKLDDIDQDEIPKIYAEAMKDFNAAPEGSK
ERVEAQIEVEVAKSLAGALGVALA*
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mRNA from alignment at scaffold_5:383153..384477-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2452 ID=mRNA_2452|Name=jgi.p|Nanoce1779_2|580422|organism=Nannochloropsis oceanica|type=mRNA|length=1325bp|location=Sequence derived from alignment at scaffold_5:383153..384477- (Nannochloropsis oceanica)
ACAGCGCCAAGATGCTTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGC
CGTGGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGCGTAAGTAGAT
AGGGCGGCTGGGGAGGAGTGATATGATGCGGGCAATTTACAGGCAAGACT
GCATACTTGTTATGGACGCTACATACTTGGTCTAGCTAACCATCGCCTCC
TATCAATACATTTCCAATGACAGCCGCGGCTGCGGACCCGGCCGCCGGCG
ACAACCTGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAAC
AAGCCTGTGGCATCTGTCGTCATCCCGGTACGTGCTTGGCTTTGTTATAT
GCTAAGGTTTGGGACATGCTACCCATATTGATATTTTTTTTACAATTTAT
GGCTGGGAAAGGTTATGAGTGAAAGGCCTTCATGGGTACACATCACTGAG
GATGGTCGGAGGCGGAGGCATTTTCGGGGGCAAGCCGTTTCTGCGCTTGG
AACGTATTCCGTAGAAGGGCGCGATAATCAAACTGGTTGAAAAAAGTAAA
ATTTACAATCCTACTTTTCATCGCCTCTTTCTTAAATACAGGGCCTGGCG
GGCGAGTACGGCGTGACAAAGAACCACTCCCCCGTTATTGCCGAGCTTAA
AGCGGGCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGT
ACTTTGTCAGCGGAGGCTTCGCCCTCACCCACGCCAACTCCGTGACGGTA
AGTCATACGAGAGTGCGGTTTGATAGTTGTTGCCGCTGCTGCGGCGGTGG
CAACGACTGCTTTGTCTGATTCGTGACATGGAAAGGAAAAGGGTATCCTC
GGATCGGCCCTATCATTTACGCACTCCGATGCACATTCGCGTCTCAATCC
CATCTTCAACGACAGGATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGA
CATCGACCAGGACGAGATCCCCAAGATCTATGCCGAGGCTATGAAGGACT
TTAATGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAA
GTAGAGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTA
AGGAGCGAGGGAAGGAGGGATTGAAGGAGAGGGAGGAGGGAGGAGTGGGA
TGATATAATAGTGAGGAGGAGCAAAAGGTAGTTCATTTTTTTGGGTGTCG
GATGCGTATATTGTGTTGCTTCCAGTTCGCGAAAGGAGAAGAAGGAGTGG
ATATTGCTGGAGGAAAAGAGGAAGAAAAAGAAGAAAAATGAAGATGAAAA
AACAAGCGAAAAGAGAGGTAGAGAG
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Coding sequence (CDS) from alignment at scaffold_5:383153..384477-

>mRNA_2452 ID=mRNA_2452|Name=jgi.p|Nanoce1779_2|580422|organism=Nannochloropsis oceanica|type=CDS|length=2100bp|location=Sequence derived from alignment at scaffold_5:383153..384477- (Nannochloropsis oceanica)
GATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATCGACCAGGACGA
GATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAATGCCGCTCCGG
AGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAGAGGTGGCCAAA
TCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGCCTGGCGGGCGA
GTACGGCGTGACAAAGAACCACTCCCCCGTTATTGCCGAGCTTAAAGCGG
GCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTTT
GTCAGCGGAGGCTTCGCCCTCACCCACGCCAACTCCGTGACGCCGCGGCT
GCGGACCCGGCCGCCGGCGACAACCTGATCCTGAACTTCTCTCTTCCGGC
TGCCAGCATCTACCGCAACAAGCCTGTGGCATCTGTCGTCATCCCGATGC
TTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGTGGTGTGCACACT
ACCCGAGTCCTGGCCTCCACCAAGCGATATCGCCGTGGTGGAAGCGGCTA
AGCTGGATGACATCGACCAGGACGAGATCCCCAAGATCTATGCCGAGGCT
ATGAAGGACTTTAATGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGC
TCAGATAGAAGTAGAGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGG
CGTTGGCTTAAGGCCTGGCGGGCGAGTACGGCGTGACAAAGAACCACTCC
CCCGTTATTGCCGAGCTTAAAGCGGGCGTTGTCCAAATCGTGCACGAGCC
GGGACAGGCCCCCGAGAAGTACTTTGTCAGCGGAGGCTTCGCCCTCACCC
ACGCCAACTCCGTGACGCCGCGGCTGCGGACCCGGCCGCCGGCGACAACC
TGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAACAAGCCT
GTGGCATCTGTCGTCATCCCGATGCTTGCTGCCCGAGGAATCTTCAAGGC
GGTTGCCCGCCGTGGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGC
GATATCGCCGTGGTGGAAGCGGCTAAGCTGGATGACATCGACCAGGACGA
GATCCCCAAGATCTATGCCGAGGCTATGAAGGACTTTAATGCCGCTCCGG
AGGGCAGCAAGGAACGGGTGGAGGCTCAGATAGAAGTAGAGGTGGCCAAA
TCACTGGCGGGCGCGTTGGGTGTGGCGTTGGCTTAAGGCCTGGCGGGCGA
GTACGGCGTGACAAAGAACCACTCCCCCGTTATTGCCGAGCTTAAAGCGG
GCGTTGTCCAAATCGTGCACGAGCCGGGACAGGCCCCCGAGAAGTACTTT
GTCAGCGGAGGCTTCGCCCTCACCCACGCCAACTCCGTGACGCCGCGGCT
GCGGACCCGGCCGCCGGCGACAACCTGATCCTGAACTTCTCTCTTCCGGC
TGCCAGCATCTACCGCAACAAGCCTGTGGCATCTGTCGTCATCCCGATGC
TTGCTGCCCGAGGAATCTTCAAGGCGGTTGCCCGCCGTGGTGTGCACACT
ACCCGAGTCCTGGCCTCCACCAAGCGATATCGCCGTGGTGGAAGCGGCTA
AGCTGGATGACATCGACCAGGACGAGATCCCCAAGATCTATGCCGAGGCT
ATGAAGGACTTTAATGCCGCTCCGGAGGGCAGCAAGGAACGGGTGGAGGC
TCAGATAGAAGTAGAGGTGGCCAAATCACTGGCGGGCGCGTTGGGTGTGG
CGTTGGCTTAAGGCCTGGCGGGCGAGTACGGCGTGACAAAGAACCACTCC
CCCGTTATTGCCGAGCTTAAAGCGGGCGTTGTCCAAATCGTGCACGAGCC
GGGACAGGCCCCCGAGAAGTACTTTGTCAGCGGAGGCTTCGCCCTCACCC
ACGCCAACTCCGTGACGCCGCGGCTGCGGACCCGGCCGCCGGCGACAACC
TGATCCTGAACTTCTCTCTTCCGGCTGCCAGCATCTACCGCAACAAGCCT
GTGGCATCTGTCGTCATCCCGATGCTTGCTGCCCGAGGAATCTTCAAGGC
GGTTGCCCGCCGTGGTGTGCACACTACCCGAGTCCTGGCCTCCACCAAGC
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Synonyms
Publications