jgi.p|Nanoce1779_2|580395, mRNA_2445 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580395
Unique Name	mRNA_2445
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1562
Alignment location	scaffold_5:363214..364775 +

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Properties


Property Name	Value
TranscriptId	580481
Track	FilteredModels2
ProteinId	580395

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:363214..364775 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580395	gene_2445	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580395	mRNA_2445-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2445	CDS_2445	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:363214..364775+
coding sequence from alignment at scaffold_5:363214..364775+

mRNA sequence

>mRNA_2445 ID=mRNA_2445|Name=jgi.p|Nanoce1779_2|580395|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp
CAGCACAGGCACAGCCCGCCTCACCCGCATCCGACCTCCCCACCCCGCTC
TCCACCTCATCACTCCTCTACCTACACCTAACAAATCATGCCCTCTCGAG
TCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGCCGACGTTGCACAA
TCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTTTCCAGGTCCAAGT
AACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGCAACGCCAATAATG
ACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGGCGTGACTGCCAGC
CTAGAAGACGTCACAACTAAATTCGAGGAACTCTATCAAGGGACCGCCTT
GACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTCCCACATGGGCTGA
TAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGCAGTCGTGACAGGC
CGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCCATGATATTGCCCA
TTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCGCCCAAACCTGATC
CTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGTCGCAGCACAAGAC
ACCCTCATGATAGGCGATACAGTCGATGACATCCGCGCCGCCCTCGCCGC
CGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAGGAAGCCAGGCTGA
CTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAATGGGGTAGCAGCT
CTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAGTCTTACGTCCGGG
ACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACTGCTGATCCTACAG
CAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGCAGATGCGGGAGAA
AAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCGGCAGTGGGAGCAG
GCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAGACGTCCATAAGTG
TTGAGATTGATCTGGACGGAGATGGGAATACAGTGGATATCTCTACGGGA
ATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGAAGCATGCGCGGTT
CGATTTGACGTTGAAATGTAAGGGGGATGTGCATATTGATGACCACCACA
CAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATTCGACCAGGCCTTG
GGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGTTGTGTCCATTGGA
CGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGCCGGCCACACGCAG
TGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGGGTTGTCGTGCGAG
ATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGGCGAGGTTGACGTT
GCATGTGGATGTACTGCGAGGATTTAATGATCACCATAAGGCGGAGAGTG
CGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGTGACGAGGGACTCC
TCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGAGGAGGGAGAGCAGG
GGGGAGGACAGG

protein sequence of jgi.p|Nanoce1779_2|580395

>mRNA_2445-protein ID=mRNA_2445-protein|Name=jgi.p|Nanoce1779_2|580395|organism=Nannochloropsis oceanica|type=polypeptide|length=483bp
MPSRVKAVLFDMDGILADVAQSYRAAIVETAAFFQVQVTQEDITREKAKG
NANNDWLLTQRLLASQGVTASLEDVTTKFEELYQGTALTEGLWAKERLIV
PHGLIAEIGRRCPLGLAVVTGRPRKDCEKFLETHDIAHFFRVCVCMEDGP
PKPDPFPVSRACTLLGVAAQDTLMIGDTVDDIRAALAAGSVPIGVLTPEE
EARLTLSPSSSNGGGGNGVAALGPHLRAAGAKTVLRPGLAELLDWVPGST
ADPTANGIGGVGVGAGADAGEKKRKAAVPVEGSGSGSRRRAATVTRVTKE
TSISVEIDLDGDGNTVDISTGIGFLDHMLTALGKHARFDLTLKCKGDVHI
DDHHTAEDCALALGEAFDQALGPRRGIMRFGTALCPLDEALSRSVVDISS
RPHAVVALGLTREKVGGLSCEMIPHVFESFASAARLTLHVDVLRGFNDHH
KAESAFKATAVALRLAVTRDSSAFIPSTKGVL*

mRNA from alignment at scaffold_5:363214..364775+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2445 ID=mRNA_2445|Name=jgi.p|Nanoce1779_2|580395|organism=Nannochloropsis oceanica|type=mRNA|length=1562bp|location=Sequence derived from alignment at scaffold_5:363214..364775+ (Nannochloropsis oceanica)
CAGCACAGGCACAGCCCGCCTCACCCGCATCCGACCTCCCCACCCCGCTC
TCCACCTCATCACTCCTCTACCTACACCTAACAAATCATGCCCTCTCGAG
TCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGCCGACGTTGCACAA
TCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTTTCCAGGTCCAAGT
AACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGCAACGCCAATAATG
ACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGGCGTGACTGCCAGC
CTAGAAGACGTCACAACTAAATTCGAGGAACTCTATCAAGGGACCGCCTT
GACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTCCCACATGGGCTGA
TAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGCAGTCGTGACAGGC
CGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCCATGATATTGCCCA
TTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCGCCCAAACCTGATC
CTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGTCGCAGCACAAGAC
ACCCTCATGATAGGCGATACAGTCGATGACATCCGCGCCGCCCTCGCCGC
CGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAGGAAGCCAGGCTGA
CTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAATGGGGTAGCAGCT
CTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAGTCTTACGTCCGGG
ACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACTGCTGATCCTACAG
CAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGCAGATGCGGGAGAA
AAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCGGCAGTGGGAGCAG
GCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAGACGTCCATAAGTG
TTGAGATTGATCTGGACGGAGATGGGAATACAGTGGATATCTCTACGGGA
ATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGAAGCATGCGCGGTT
CGATTTGACGTTGAAATGTAAGGGGGATGTGCATATTGATGACCACCACA
CAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATTCGACCAGGCCTTG
GGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGTTGTGTCCATTGGA
CGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGCCGGCCACACGCAG
TGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGGGTTGTCGTGCGAG
ATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGGCGAGGTTGACGTT
GCATGTGGATGTACTGCGAGGATTTAATGATCACCATAAGGCGGAGAGTG
CGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGTGACGAGGGACTCC
TCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGAGGAGGGAGAGCAGG
GGGGAGGACAGG

Coding sequence (CDS) from alignment at scaffold_5:363214..364775+

>mRNA_2445 ID=mRNA_2445|Name=jgi.p|Nanoce1779_2|580395|organism=Nannochloropsis oceanica|type=CDS|length=1449bp|location=Sequence derived from alignment at scaffold_5:363214..364775+ (Nannochloropsis oceanica)
ATGCCCTCTCGAGTCAAGGCCGTCCTCTTCGATATGGATGGTATCCTGGC
CGACGTTGCACAATCCTACCGCGCCGCCATCGTGGAGACCGCCGCATTTT
TCCAGGTCCAAGTAACTCAAGAAGACATCACCCGAGAAAAGGCCAAAGGC
AACGCCAATAATGACTGGCTCCTCACTCAACGCCTGCTGGCCAGCCAGGG
CGTGACTGCCAGCCTAGAAGACGTCACAACTAAATTCGAGGAACTCTATC
AAGGGACCGCCTTGACCGAGGGATTATGGGCAAAGGAGCGTCTCATCGTC
CCACATGGGCTGATAGCAGAGATCGGGCGTCGGTGCCCTCTAGGCCTCGC
AGTCGTGACAGGCCGCCCCCGCAAAGACTGCGAAAAATTCCTAGAGACCC
ATGATATTGCCCATTTCTTTCGCGTGTGCGTCTGCATGGAAGACGGGCCG
CCCAAACCTGATCCTTTTCCAGTCTCGCGCGCCTGTACCCTACTAGGTGT
CGCAGCACAAGACACCCTCATGATAGGCGATACAGTCGATGACATCCGCG
CCGCCCTCGCCGCCGGCTCCGTCCCTATTGGTGTGCTTACCCCGGAAGAG
GAAGCCAGGCTGACTCTCTCCCCCTCTTCCTCAAATGGTGGTGGTGGTAA
TGGGGTAGCAGCTCTCGGACCTCATCTGCGCGCAGCAGGCGCCAAGACAG
TCTTACGTCCGGGACTGGCCGAGCTCTTGGATTGGGTGCCAGGTTCTACT
GCTGATCCTACAGCAAATGGAATAGGAGGGGTTGGGGTCGGGGCAGGGGC
AGATGCGGGAGAAAAGAAACGAAAGGCTGCGGTTCCTGTGGAGGGCAGCG
GCAGTGGGAGCAGGCGGCGGGCCGCGACGGTGACAAGGGTGACGAAGGAG
ACGTCCATAAGTGTTGAGATTGATCTGGACGGAGATGGGAATACAGTGGA
TATCTCTACGGGAATTGGGTTTTTGGATCACATGCTGACGGCATTGGGGA
AGCATGCGCGGTTCGATTTGACGTTGAAATGTAAGGGGGATGTGCATATT
GATGACCACCACACAGCGGAGGACTGTGCCTTGGCATTAGGGGAGGCATT
CGACCAGGCCTTGGGGCCAAGAAGGGGCATCATGAGGTTTGGCACGGCGT
TGTGTCCATTGGACGAGGCCTTGAGCAGGAGCGTGGTGGATATCAGTAGC
CGGCCACACGCAGTGGTGGCACTCGGCTTGACACGGGAGAAGGTAGGGGG
GTTGTCGTGCGAGATGATTCCACATGTATTTGAGTCGTTTGCGTCGGCGG
CGAGGTTGACGTTGCATGTGGATGTACTGCGAGGATTTAATGATCACCAT
AAGGCGGAGAGTGCGTTCAAAGCCACGGCGGTGGCGTTACGCTTGGCGGT
GACGAGGGACTCCTCGGCCTTTATCCCGAGTACAAAGGGCGTGTTGTGA

Synonyms

Publications