jgi.p|Nanoce1779_2|580391, mRNA_2444 (mRNA) Nannochloropsis oceanica

Overview
Namejgi.p|Nanoce1779_2|580391
Unique NamemRNA_2444
TypemRNA
OrganismNannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length1256
Alignment locationscaffold_5:361712..362967 -

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Properties
Property NameValue
TranscriptId580477
TrackFilteredModels2
ProteinId580391
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_5supercontigscaffold_5:361712..362967 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. oceanica CCMP17792008-02-01
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580391gene_2444Nannochloropsis oceanica (N. oceanica CCMP1779)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
jgi.p|Nanoce1779_2|580391mRNA_2444-proteinNannochloropsis oceanica (N. oceanica CCMP1779)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS_2444CDS_2444Nannochloropsis oceanica (N. oceanica CCMP1779)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>mRNA_2444 ID=mRNA_2444|Name=jgi.p|Nanoce1779_2|580391|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp
CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC
CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT
GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT
GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG
ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT
GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC
TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC
GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT
CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG
GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG
ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC
GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA
CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA
GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC
AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG
GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG
GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA
GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA
GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC
GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT
CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA
AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC
CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG
TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT
GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT
GCCAGC
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protein sequence of jgi.p|Nanoce1779_2|580391

>mRNA_2444-protein ID=mRNA_2444-protein|Name=jgi.p|Nanoce1779_2|580391|organism=Nannochloropsis oceanica|type=polypeptide|length=315bp
MIDLLPLRRPRLLRLFSCALPVLFLLLPSAATVSINRGGKSSSCLPRSLD
LSVKRLMKEWRVVMAEGLVLLNQGGGNCSLTNNTEHIRLAPCRGNLHEWH
FSIAGPPGSVFEGGIYHGRVLLPADYPSSAPRLQMLNPSGRFEVGADICL
SATAFHQETWQPVWTVRTLVSALRSHMTTKALEVGGIECSARRRRLLAQR
SRRFQCRGCGVDHSGFPGKIFEDLPMLVAEVEVEEKVTASTSSSAVTGNG
KEEGTARRRRIGKIEGRRGGDRVAMTEKGYDACFVSLFDRYKLPLVLGIA
FLLAFLWLNVSSGY*
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mRNA from alignment at scaffold_5:361712..362967-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_2444 ID=mRNA_2444|Name=jgi.p|Nanoce1779_2|580391|organism=Nannochloropsis oceanica|type=mRNA|length=1256bp|location=Sequence derived from alignment at scaffold_5:361712..362967- (Nannochloropsis oceanica)
CAGGCAGGAGAATGCCAAATCTCTAAGATTTCTACCTCTATCCTTAGTAC
CTGCGCTGCGGGCGCCTGGTCAGAGTGCCTCTCTTTCCTCCCAGGATCAT
GATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTCAT
GTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTATCG
ATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGACTT
GTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGGCC
TCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACACC
GAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCATTT
CTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCATG
GCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTACAG
ATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTATC
GGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAGGA
CGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGGTA
GGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGATC
AAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCCTG
GGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGGAG
GAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGAAA
GGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAGAA
GAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCTTC
GTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCGTT
CCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGATGAAGAA
AAGAAAATACGATTGTCTCAGTCATGTCGTATCTCTTCCATTATCCTCTC
CTCCTTCTGACTTGACCTCAGGGCAGAAACGGGGCGCTTGAATCCTCCCG
TCCTCTAGTTGGCCGCCGTGACGACGCCGGTATCTCGACAAAGCAAAATT
GAGGAATGTAACCGATATTCGCGAATCAAAGTAAATCAATCTCCATCGAT
GCCAGC
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Coding sequence (CDS) from alignment at scaffold_5:361712..362967-

>mRNA_2444 ID=mRNA_2444|Name=jgi.p|Nanoce1779_2|580391|organism=Nannochloropsis oceanica|type=CDS|length=945bp|location=Sequence derived from alignment at scaffold_5:361712..362967- (Nannochloropsis oceanica)
ATGATTGACCTCCTCCCCCTCCGCCGTCCCCGCCTACTCCGCCTCTTTTC
ATGTGCACTACCGGTCCTTTTCCTCCTCCTCCCTTCCGCTGCAACTGTAT
CGATTAACCGAGGTGGCAAAAGTTCCTCTTGTCTCCCGCGGTCCCTTGAC
TTGTCCGTCAAACGACTGATGAAAGAGTGGCGCGTTGTTATGGCCGAAGG
CCTCGTGCTCCTCAATCAGGGCGGAGGCAATTGCAGTCTCACCAACAACA
CCGAGCACATTCGACTGGCGCCTTGCCGTGGAAACCTGCATGAGTGGCAT
TTCTCGATTGCTGGACCACCCGGGAGTGTGTTTGAAGGAGGGATTTACCA
TGGCCGTGTGCTCTTGCCCGCCGACTACCCTTCCTCTGCCCCGCGTTTAC
AGATGCTCAATCCGAGCGGTCGCTTCGAGGTAGGCGCAGACATTTGTTTA
TCGGCAACGGCTTTTCATCAGGAGACCTGGCAGCCGGTATGGACGGTCAG
GACGTTGGTAAGTGCGTTAAGGAGTCACATGACGACCAAGGCTTTGGAGG
TAGGTGGGATTGAGTGCTCGGCGCGCCGACGACGGTTGCTGGCGCAGCGA
TCAAGAAGGTTTCAGTGTCGGGGATGTGGAGTGGATCATTCGGGCTTTCC
TGGGAAGATTTTTGAGGATCTGCCGATGTTGGTAGCGGAGGTTGAGGTGG
AGGAGAAGGTGACTGCGTCGACCTCTTCGTCGGCGGTGACGGGAAATGGA
AAGGAGGAGGGAACAGCACGGAGGAGAAGAATAGGGAAAATAGAAGGAAG
AAGAGGAGGTGATCGTGTGGCGATGACCGAAAAGGGATATGATGCCTGCT
TCGTGTCTTTATTTGACCGGTATAAATTGCCGTTGGTGCTGGGCATTGCG
TTCCTGCTGGCATTCCTCTGGCTGAATGTGTCCTCCGGTTATTGA
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Synonyms
Publications