jgi.p|Nanoce1779_2|329295, mRNA_2443 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|329295
Unique Name	mRNA_2443
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	2897
Alignment location	scaffold_5:357641..361000 +

Link to JBrowse

Properties


Property Name	Value
TranscriptId	329381
Track	FilteredModels2
ProteinId	329295

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:357641..361000 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|329295	gene_2443	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|329295	mRNA_2443-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2443	CDS_2443	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:357641..361000+
coding sequence from alignment at scaffold_5:357641..361000+

mRNA sequence

>mRNA_2443 ID=mRNA_2443|Name=jgi.p|Nanoce1779_2|329295|organism=Nannochloropsis oceanica|type=mRNA|length=2897bp
CAGCTGAAGAAGGGAGCGCGGGGGCGTCTTGTTTTGCATCCATTTCTTGG
GAAGCGAATCAGGAACCAAAGTGTTTTTCACTGCTTTTTCATTGAATTCT
GCGTGTTTTTAGTGCGTGTGCGGGTGTCTCAAGGGCTCAGGTGACTGGCG
CTTCTCCACCCCCTACACTTTTTGAACGAGAACGAGGAGTGCTGCGTCTT
CAGACAAACCAAGCACCATGTCCTCCCCCAAGAACATTCTGGCCCCCGCA
AGCTTGTCCCTAAACAATTACAATAAACCCAGCCACGATCTCGGCAGCCC
AAAGACGCAACACCATCACCATGGCCTGCATCATCAGCACCAGCACAAGC
AGCAGTACCAGCACCAACAGCAACTGCAGCACGCCCATGTTCTCGGTGGC
AAATCAGTAGCCGGTTCCAACAAGATCCTTCCTTTCACCTCATCTATGGA
TGAAGTTAAATATGCCGCTGGCGGGCTGATCAAGCCCGGGACGCAAGGCC
TGGGCAGCATGCTCTCTACACCCTTGACGCCCTCGGCTTCTCTTATTGCA
TCGTCGGTGGTAGAGGCCGATGCAAAGCAACAACAACTGCTGAAGGATTC
CCTCACCGCCGACCTCAAATTGCTCCTGCACGAATTCGAACGCTTCCAGC
AGGCCACTGCAGCAGCAGCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCA
GCTGAGCGATCGACGAAAGTGGAGTTCTTTTTGGGATACATTGAGCGAGT
TCTCCACGATTTGGCAGGGGCTGACGCATCGAAACTGCAGGATCTCGAGG
TGCGGATCAAGACAAGTCTACTACCACTCAAGGGCCAGGTGGTTAGCCAG
CTTGCGGCGCAAAATAATAACTCCCCTCCTCCCCATAAGGAGCAGCAGTC
ATCTTGGTTCCATCCTTCTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTT
CCGTCTCCAGCGTGCACACAACTCCTCCTGGATCTCCCTTGGCAAGGGAG
GAGACGGTGATGAGCACCTACGGTCCCTTTACCCACTCCCGCGTCGCAGC
AGCAGACGCAGTCTTTCTCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGC
CGCCTGTGAGTTTCCGGAGGGATCAGAGTGACATAAGTGGGATTACGTCG
TGCTCGTCATCATCGTCGTCATGCGGGGGGGAAGGAGGTGCGGGGCATAT
GGACGATTTAGATTTGGAGTGTTTTAGCTTGATAATGGACGAGGCTGCCG
CTACTGCTCCTTTTACTACTGCAGGTAATGGTGGGAAGGATCTGCCGGCC
AATGGCTCATGTGTTGATGATGACATGACGGATGCTGGCTCTCTAACTTC
AGAGGAAAGCAGCGTGTTTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGC
TCAGCACTGTTAGTACGGGCTTGGACCCAACAAGCAGCAACAGTGGAAAT
AAGCGGACCTTGCCCTTAGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGTCTTTCTCTGGCCACAGCGTCCTCCGTATCTACAGACACTC
TGCAGCAGCCGCTCAAGCGCGCCCGCAGCGTCATCCTACCCACCAGCAGC
AGCAGCAGCAGCAGTTGTGCTACGCATGCACCTCCCTGCCTCGCCTCCTC
CTCCACCTCCTCCTCTTCTTCTTTCTCTTCCCCTTTCTCTTCCTCTTCGG
TGGCGACAGTGGCAGCAGCAGATGTCAGCAAGCCTCTCCTTCGTCAGGTT
GAGTATCAGTGCGGTGCTTGCGCCGACACCTACACCGCTGCCTCCTCCCT
CAATCCCTGGTGGGCCCTCGAGCGACAGGAGTGTCCCAAGTGCAAGAAGG
TTCAAGTTCCACGCATTGACATTAACCTGCCTGCCAACACCATGGAATAC
CACCCGGCTTTGCTCGCGGAGGAAGGCGATGATGACGATGATGATGAGGT
GGGAGGCGGGAGGGAGGGAGGGATGATGATGATGCCGGGGGGAGGGGATG
GACATGGACATGTGGAGGAAAGAGAGGAGGGAGAGACGAGTGAGAAAGGG
AGCGGTGGAAGTAGCGTACTAGAGGAGGACGAGGAAGCAGTGTTGAGCCC
TATGCAAGCTTCACAGCTGTTGAGTTTGTTGGAGCATGCGCGGACATGCC
CGGGCAATCATGCTGCCGAGAAACACCAGGCTGTGTGTACGAGTGCCAAG
TATCTCATGTTGCATGTGAGGGATTGTGATGGCAGGACGTTAGATGGGGA
GGCTTGTGGATTCTCGTGGTGCAGGCCTTGCAAACACTTGCTCGGGCACC
TGGTCCGGTGTTACGAAGCCGAGAAGTGTCAGATCTGCTGTTTCTCACAC
CAAGAAGAGGAGGAGAAAGTGGAAAAGAAGGTGATGATGAGTGTGGAGGA
GATGATTGAGGAGAAAGGAATGAGGGTCGACACCTACAGGAGCTTGACGA
GCTTGAGCTGAGACAAGGTGTGATGAGAAGAGGAGGGGAAGAAGGGAGGG
ACATATCTGTATGGCCGCATGTATTGTGGTAAGAAATGTGCGTGTCTTGA
TGTGATCTATTTAAATGTCTGAGTGAAGTGATCTAATGTCCCTGCCTGTC
CATCAGTCTGATGACAACTGAGAAAAAACATCGATTGGGAGAGTGAAAGT
AGAAATGATGTATGAAACCAACCAGGAGTGACGGCAACGATGCTGGCGCT
GCATGTGCAAACGAGCGCATGATTAATCGAACGAGTACATGGACAAGAAG
ACACGTGTATGAGAGAGAGGAAATGAGATAGAGAGAGGGAGAGAGAATGA
GAGAGTAAAAGATGATTTATTTATTTATATCGAAAATCTATTGCCCGCCC
ATCTATGATTTAGATCTATTACCCACCTATCTACATAGCGATCGAGT

protein sequence of jgi.p|Nanoce1779_2|329295

>mRNA_2443-protein ID=mRNA_2443-protein|Name=jgi.p|Nanoce1779_2|329295|organism=Nannochloropsis oceanica|type=polypeptide|length=748bp
MSSPKNILAPASLSLNNYNKPSHDLGSPKTQHHHHGLHHQHQHKQQYQHQ
QQLQHAHVLGGKSVAGSNKILPFTSSMDEVKYAAGGLIKPGTQGLGSMLS
TPLTPSASLIASSVVEADAKQQQLLKDSLTADLKLLLHEFERFQQATAAA
AGTGGVGEEEAAERSTKVEFFLGYIERVLHDLAGADASKLQDLEVRIKTS
LLPLKGQVVSQLAAQNNNSPPPHKEQQSSWFHPSSTCSSLSSSSSVSSVH
TTPPGSPLAREETVMSTYGPFTHSRVAAADAVFLSSSSAASRLMPPVSFR
RDQSDISGITSCSSSSSSCGGEGGAGHMDDLDLECFSLIMDEAAATAPFT
TAGNGGKDLPANGSCVDDDMTDAGSLTSEESSVFVSSPRESSSSLSTVST
GLDPTSSNSGNKRTLPLEFPSSSSSSSSSSSLSLATASSVSTDTLQQPLK
RARSVILPTSSSSSSSCATHAPPCLASSSTSSSSSFSSPFSSSSVATVAA
ADVSKPLLRQVEYQCGACADTYTAASSLNPWWALERQECPKCKKVQVPRI
DINLPANTMEYHPALLAEEGDDDDDDEVGGGREGGMMMMPGGGDGHGHVE
EREEGETSEKGSGGSSVLEEDEEAVLSPMQASQLLSLLEHARTCPGNHAA
EKHQAVCTSAKYLMLHVRDCDGRTLDGEACGFSWCRPCKHLLGHLVRCYE
AEKCQICCFSHQEEEEKVEKKVMMSVEEMIEEKGMRVDTYRSLTSLS*

mRNA from alignment at scaffold_5:357641..361000+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2443 ID=mRNA_2443|Name=jgi.p|Nanoce1779_2|329295|organism=Nannochloropsis oceanica|type=mRNA|length=3360bp|location=Sequence derived from alignment at scaffold_5:357641..361000+ (Nannochloropsis oceanica)
CAGCTGAAGAAGGGTATATAGTGCTTTTGTGGCTATGTGCACCCATCCAA
GCTTTGCTAACCCTGTGCCAAGCAACCTCCGTCACAAGCTCTTCTCAAAT
GCCCTTACTTTATTTCCCACACAGGAGCGCGGGGGCGTCTTGTTTTGCAT
CCATTTCTTGGGAAGCGAATCAGGAACCAAAGGTACACGAGAACGCTCTC
CAGTACACAGGAGACCTAATTTGTCCGATTTAGGCAAACCTCTCTTTTGG
CACGTGGGCACCATCTTGTGCTCGTGTACGAAGGTGTTCCCGTAGTTTCA
GAGTGTGTACTTGTGGTCGTGTCGTGTGAATTGCCCGTCCTCTCCCACCT
TCTAAGAAACAAGATCGCCTCGTCTGCAGTACGGGCATTGTTTCACTTCT
TCCTTCGGTGGCGAGACTCGACGGACAACAGTCACACACACACAACACAC
ACAGTGTTTTTCACTGCTTTTTCATTGAATTCTGCGTGTTTTTAGTGCGT
GTGCGGGTGTCTCAAGGGCTCAGGTGACTGGCGCTTCTCCACCCCCTACA
CTTTTTGAACGAGAACGAGGAGTGCTGCGTCTTCAGACAAACCAAGCACC
ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTC
TGGCCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAG
CGCGCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTG
TGCTACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTT
CTTCTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCA
GCAGATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGC
TTGCGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCC
TCGAGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATT
GACATTAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGC
GGAGGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGG
GAGGGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATGTGGAG
GAAAGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGT
ACTAGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGC
TGTTGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCC
GAGAAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGT
GAGGGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGT
GGTGCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAA
GCCGAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAA
AGTGGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAG
GAATGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGAGACAAG
GTGTGATGAGAAGAGGAGGGGAAGAAGGGAGGGACATATCTGTATGGCCG
CATGTATTGTGGTAAGAAATGTGCGTGTCTTGATGTGATCTATTTAAATG
TCTGAGTGAGTGAATGTCCGAGTGAGTGAATGTCCGAGTGAGTGAATGTC
CGCGCTTGTGTGTATCGGTAGGTACGAGCGAGGGAAAAGAGTGATCTAAT
GTCCCTGCCTGTCCATCAGTCTGATGACAACTGAGAAAAAACATCGATTG
GGAGAGTGAAAGTAGAAATGATGTATGAAACCAACCAGGAGTGACGGCAA
CGATGCTGGCGCTGCATGTGCAAACGAGCGCATGATTAATCGAACGAGTA
CATGGACAAGAAGACACGTGTATGAGAGAGAGGAAATGAGATAGAGAGAG
GGAGAGAGAATGAGAGAGTAAAAGATGATTTATTTATTTATATCGAAAAT
CTATTGCCCGCCCATCTATGATTTAGATCTATTACCCACCTATCTACATA
GCGATCGAGT

Coding sequence (CDS) from alignment at scaffold_5:357641..361000+

>mRNA_2443 ID=mRNA_2443|Name=jgi.p|Nanoce1779_2|329295|organism=Nannochloropsis oceanica|type=CDS|length=2244bp|location=Sequence derived from alignment at scaffold_5:357641..361000+ (Nannochloropsis oceanica)
ATGTCCTCCCCCAAGAACATTCTGGCCCCCGCAAGCTTGTCCCTAAACAA
TTACAATAAACCCAGCCACGATCTCGGCAGCCCAAAGACGCAACACCATC
ACCATGGCCTGCATCATCAGCACCAGCACAAGCAGCAGTACCAGCACCAA
CAGCAACTGCAGCACGCCCATGTTCTCGGTGGCAAATCAGTAGCCGGTTC
CAACAAGATCCTTCCTTTCACCTCATCTATGGATGAAGTTAAATATGCCG
CTGGCGGGCTGATCAAGCCCGGGACGCAAGGCCTGGGCAGCATGCTCTCT
ACACCCTTGACGCCCTCGGCTTCTCTTATTGCATCGTCGGTGGTAGAGGC
CGATGCAAAGCAACAACAACTGCTGAAGGATTCCCTCACCGCCGACCTCA
AATTGCTCCTGCACGAATTCGAACGCTTCCAGCAGGCCACTGCAGCAGCA
GCGGGAACAGGAGGCGTGGGCGAGGAGGAGGCAGCTGAGCGATCGACGAA
AGTGGAGTTCTTTTTGGGATACATTGAGCGAGTTCTCCACGATTTGGCAG
GGGCTGACGCATCGAAACTGCAGGATCTCGAGGTGCGGATCAAGACAAGT
CTACTACCACTCAAGGGCCAGGTGGTTAGCCAGCTTGCGGCGCAAAATAA
TAACTCCCCTCCTCCCCATAAGGAGCAGCAGTCATCTTGGTTCCATCCTT
CTTCCACCTGCTCCTCCCTCTCCTCCTCTTCTTCCGTCTCCAGCGTGCAC
ACAACTCCTCCTGGATCTCCCTTGGCAAGGGAGGAGACGGTGATGAGCAC
CTACGGTCCCTTTACCCACTCCCGCGTCGCAGCAGCAGACGCAGTCTTTC
TCTCCTCTTCCTCTGCTGCTTCTCGGCTGATGCCGCCTGTGAGTTTCCGG
AGGGATCAGAGTGACATAAGTGGGATTACGTCGTGCTCGTCATCATCGTC
GTCATGCGGGGGGGAAGGAGGTGCGGGGCATATGGACGATTTAGATTTGG
AGTGTTTTAGCTTGATAATGGACGAGGCTGCCGCTACTGCTCCTTTTACT
ACTGCAGGTAATGGTGGGAAGGATCTGCCGGCCAATGGCTCATGTGTTGA
TGATGACATGACGGATGCTGGCTCTCTAACTTCAGAGGAAAGCAGCGTGT
TTGTGTCCTCCCCCCGGGAGTCCTCCTCTTCGCTCAGCACTGTTAGTACG
GGCTTGGACCCAACAAGCAGCAACAGTGGAAATAAGCGGACCTTGCCCTT
AGAATTTCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGTCTTTCTC
TGGCCACAGCGTCCTCCGTATCTACAGACACTCTGCAGCAGCCGCTCAAG
CGCGCCCGCAGCGTCATCCTACCCACCAGCAGCAGCAGCAGCAGCAGTTG
TGCTACGCATGCACCTCCCTGCCTCGCCTCCTCCTCCACCTCCTCCTCTT
CTTCTTTCTCTTCCCCTTTCTCTTCCTCTTCGGTGGCGACAGTGGCAGCA
GCAGATGTCAGCAAGCCTCTCCTTCGTCAGGTTGAGTATCAGTGCGGTGC
TTGCGCCGACACCTACACCGCTGCCTCCTCCCTCAATCCCTGGTGGGCCC
TCGAGCGACAGGAGTGTCCCAAGTGCAAGAAGGTTCAAGTTCCACGCATT
GACATTAACCTGCCTGCCAACACCATGGAATACCACCCGGCTTTGCTCGC
GGAGGAAGGCGATGATGACGATGATGATGAGGTGGGAGGCGGGAGGGAGG
GAGGGATGATGATGATGCCGGGGGGAGGGGATGGACATGGACATGTGGAG
GAAAGAGAGGAGGGAGAGACGAGTGAGAAAGGGAGCGGTGGAAGTAGCGT
ACTAGAGGAGGACGAGGAAGCAGTGTTGAGCCCTATGCAAGCTTCACAGC
TGTTGAGTTTGTTGGAGCATGCGCGGACATGCCCGGGCAATCATGCTGCC
GAGAAACACCAGGCTGTGTGTACGAGTGCCAAGTATCTCATGTTGCATGT
GAGGGATTGTGATGGCAGGACGTTAGATGGGGAGGCTTGTGGATTCTCGT
GGTGCAGGCCTTGCAAACACTTGCTCGGGCACCTGGTCCGGTGTTACGAA
GCCGAGAAGTGTCAGATCTGCTGTTTCTCACACCAAGAAGAGGAGGAGAA
AGTGGAAAAGAAGGTGATGATGAGTGTGGAGGAGATGATTGAGGAGAAAG
GAATGAGGGTCGACACCTACAGGAGCTTGACGAGCTTGAGCTGA

Synonyms

Publications