jgi.p|Nanoce1779_2|580385, mRNA_2442 (mRNA) Nannochloropsis oceanica | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	jgi.p\|Nanoce1779_2\|580385
Unique Name	mRNA_2442
Type	mRNA
Organism	Nannochloropsis oceanica (N. oceanica CCMP1779)
Sequence length	1372
Alignment location	scaffold_5:355367..357140 +

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Properties


Property Name	Value
TranscriptId	580471
Track	FilteredModels2
ProteinId	580385

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_5	supercontig	scaffold_5:355367..357140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. oceanica CCMP1779	2008-02-01

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580385	gene_2442	Nannochloropsis oceanica (N. oceanica CCMP1779)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
jgi.p\|Nanoce1779_2\|580385	mRNA_2442-protein	Nannochloropsis oceanica (N. oceanica CCMP1779)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
CDS_2442	CDS_2442	Nannochloropsis oceanica (N. oceanica CCMP1779)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at scaffold_5:355367..357140+
coding sequence from alignment at scaffold_5:355367..357140+

mRNA sequence

>mRNA_2442 ID=mRNA_2442|Name=jgi.p|Nanoce1779_2|580385|organism=Nannochloropsis oceanica|type=mRNA|length=1372bp
ACGACAGCACACAGGCAAAGAAGCTTGTTCAAGCCATCATCACAAACAAT
TCCTCATCTACACTACCCTAGCCGCTGACATCCAGCCACATGGCATCGCC
CAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAGGAGCAGTGGTG
TTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTAAGCGGGACAAG
GCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTCAACCTCTTGGG
CGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTGTCCTTTGAAAG
TAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGATCTCTAGTGGC
GACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAATGGTAGTCAAGG
AGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGCACCTACACCTA
GACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCATCCTCATCTTCC
TCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCTTCTTTTGGCAT
GAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAGCACGGGCAATC
GAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTACTTCTGCGTCA
ACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCAGCAACAGGAGC
CGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGGCTCCCCCACCT
TTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCACCATCGGAGGAG
CTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGACTTGAAAGTGG
GGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCACTGAGAGGGCCGA
CTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGACGCCTCAAGAACT
TCATCTGATTGAAAACTTGGGTCAGACCCCGGCCATGGGTGTACAAATTC
GTTTGTAGAAGGCGTAGAAACCGTATTCTCTTAGAAAAAACGCAAACCCG
CCACCCCACACCGGGGTAGACAAATTAAGATTTGTGTCCCACATGGTGAT
CGATCTCGCTATTTGACCCGATAGCCAGAACCGACTCGTCAAATAGCTCG
GTCTCCCTCTGGCCGATTGATTGCATGAGCGAGGGCGTGTGAGGTTACCA
TGTTTTTTTTTTAAAAACAGTGGAGAGGAAGGACTCTTCTTATTTGTGGA
AAAGCCGTCCTCTATCTTGAACCTGTTAACCATCGCCATGCTATTATTGT
TTTTTCGTGCGCGTACGGGTCATTTATTTTAAGCAACGTCTTTCTCTCGG
TAACGTCGGCGCGAGGACAGGT

protein sequence of jgi.p|Nanoce1779_2|580385

>mRNA_2442-protein ID=mRNA_2442-protein|Name=jgi.p|Nanoce1779_2|580385|organism=Nannochloropsis oceanica|type=polypeptide|length=291bp
MASPSGKGSGTTSGKSRSSGVLWTSSCSPLTISKRDKAGLPCPGDDSELL
NLLGDENETLFRTRPLCPLKVGTAEPLATAGTTISSGDSSGVKESKNSNN
GSQGEGKTTSTSITASAPTPRPAPSSLIIASSSSSSSSSTTPASLRAWGP
SFGMKEPSGYASLLLTSTGNRTSFSTSVVPLPSTSASTTPGSAAAAAIEA
ATGAVGQSPSLWCSLHGSPTFGDGRQQQRMKRAPSEELEDAANELTKRLR
LESGASARLRQGMLDSLRGPTALTGEGLRGSTDASRTSSD*

mRNA from alignment at scaffold_5:355367..357140+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_2442 ID=mRNA_2442|Name=jgi.p|Nanoce1779_2|580385|organism=Nannochloropsis oceanica|type=mRNA|length=1774bp|location=Sequence derived from alignment at scaffold_5:355367..357140+ (Nannochloropsis oceanica)
ACGACAGCACACAGGCAAAGAAGCTTGTTCAAGCCATCATCACAAACAAT
TCCTCATCTACACTACCCTAGCCGCTGACATCCAGCCACATGGCATCGCC
CAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAGGAGCAGTGGTG
TTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTAAGCGGGACAAG
GCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTCAACCTCTTGGG
CGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTGTCCTTTGAAAG
TAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGATCTCTAGTGGC
GACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAATGGTAGTCAAGG
AGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGCACCTACACCTA
GACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCATCCTCATCTTCC
TCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCTTCTTTTGGCAT
GAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAGCACGGGCAATC
GAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTACTTCTGCGTCA
ACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCAGCAACAGGAGC
CGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGGCTCCCCCACCT
TTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCACCATCGGAGGAG
CTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGGTAAATGAAAGT
GGTAAAGGTGCGCGGGTGTGAATAGCCAAGTTGACCATACGAATTCATAC
AGGAGACATGCAAAGCGTGTTTCACTTCATTTCATCTCTCAACGCATATT
TGCAGATGTGTTCTGAACATTTCTGCGTCTTTGCAGAGTTTAATAAAGCA
GGCTGGCACGTAAATAAAGGGTCGCAACTCCCTATCACACCAAGCCAAAA
ACCAGCTTGGACTTATCCGCTTTTTTAAAGAGGGCGGCAAAGCGCAGAAT
TCAATGATGTGGTTCCTCAAGCATCATTCTAATTGTTGCCCTTACGGCGG
TACTATTTTTGCTTCTTCTTTGTGTGAGCTTTTCTTCTCATTTCCTCCCC
TTTCTGCTCTTCCCTTCCAAAATCCACCGTGAACACACAGACTTGAAAGT
GGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCACTGAGAGGGCC
GACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGACGCCTCAAGAA
CTTCATCTGATTGAAAACTTGGGTCAGACCCCGGCCATGGGTGTACAAAT
TCGTTTGTAGAAGGCGTAGAAACCGTATTCTCTTAGAAAAAACGCAAACC
CGCCACCCCACACCGGGGTAGACAAATTAAGATTTGTGTCCCACATGGTG
ATCGATCTCGCTATTTGACCCGATAGCCAGAACCGACTCGTCAAATAGCT
CGGTCTCCCTCTGGCCGATTGATTGCATGAGCGAGGGCGTGTGAGGTTAC
CATGTTTTTTTTTTAAAAACAGTGGAGAGGAAGGACTCTTCTTATTTGTG
GAAAAGCCGTCCTCTATCTTGAACCTGTTAACCATCGCCATGCTATTATT
GTTTTTTCGTGCGCGTACGGGTCATTTATTTTAAGCAACGTCTTTCTCTC
GGTAACGTCGGCGCGAGGACAGGT

Coding sequence (CDS) from alignment at scaffold_5:355367..357140+

>mRNA_2442 ID=mRNA_2442|Name=jgi.p|Nanoce1779_2|580385|organism=Nannochloropsis oceanica|type=CDS|length=1746bp|location=Sequence derived from alignment at scaffold_5:355367..357140+ (Nannochloropsis oceanica)
ATGGCATCGCCCAGCGGCAAAGGCAGTGGGACTACAAGCGGCAAGAGCAG
GAGCAGTGGTGTTTTGTGGACGTCATCTTGCTCCCCTCTTACTATCTCTA
AGCGGGACAAGGCGGGTCTGCCATGCCCCGGAGACGATTCAGAGCTGCTC
AACCTCTTGGGCGACGAGAACGAAACTCTTTTTCGCACTCGTCCTTTGTG
TCCTTTGAAAGTAGGCACAGCGGAGCCACTGGCAACCGCCGGCACGACGA
TCTCTAGTGGCGACAGCAGCGGCGTCAAGGAGTCCAAGAACAGTAACAAT
GGTAGTCAAGGAGAAGGGAAGACAACCAGTACCTCGATTACAGCATCTGC
ACCTACACCTAGACCTGCACCTTCGAGTCTAATAATCGCTTCGTCCTCAT
CCTCATCTTCCTCCTCCACCACCCCTGCTTCCTTACGAGCCTGGGGTCCT
TCTTTTGGCATGAAGGAGCCCTCGGGCTATGCCTCCTTGCTCCTCACCAG
CACGGGCAATCGAACATCCTTTTCGACTTCGGTAGTCCCTCTCCCGTCTA
CTTCTGCGTCAACCACGCCCGGGTCAGCAGCTGCTGCTGCAATAGAAGCA
GCAACAGGAGCCGTGGGTCAATCGCCCTCGTTGTGGTGCTCTCTGCATGG
CTCCCCCACCTTTGGGGATGGTCGGCAGCAGCAGCGGATGAAGCGGGCAC
CATCGGAGGAGCTGGAAGACGCGGCGAATGAGCTCACGAAGCGACTCAGA
CTTGAAAGTGGGGCCTCGGCACGGCTTCGACAGGGCATGCTCGATTCACT
GAGAGGGCCGACTGCCCTAACAGGGGAAGGTCTCCGAGGAAGTACCGACG
CCTCAAGAACTTCATCTGATTGAATGGCATCGCCCAGCGGCAAAGGCAGT
GGGACTACAAGCGGCAAGAGCAGGAGCAGTGGTGTTTTGTGGACGTCATC
TTGCTCCCCTCTTACTATCTCTAAGCGGGACAAGGCGGGTCTGCCATGCC
CCGGAGACGATTCAGAGCTGCTCAACCTCTTGGGCGACGAGAACGAAACT
CTTTTTCGCACTCGTCCTTTGTGTCCTTTGAAAGTAGGCACAGCGGAGCC
ACTGGCAACCGCCGGCACGACGATCTCTAGTGGCGACAGCAGCGGCGTCA
AGGAGTCCAAGAACAGTAACAATGGTAGTCAAGGAGAAGGGAAGACAACC
AGTACCTCGATTACAGCATCTGCACCTACACCTAGACCTGCACCTTCGAG
TCTAATAATCGCTTCGTCCTCATCCTCATCTTCCTCCTCCACCACCCCTG
CTTCCTTACGAGCCTGGGGTCCTTCTTTTGGCATGAAGGAGCCCTCGGGC
TATGCCTCCTTGCTCCTCACCAGCACGGGCAATCGAACATCCTTTTCGAC
TTCGGTAGTCCCTCTCCCGTCTACTTCTGCGTCAACCACGCCCGGGTCAG
CAGCTGCTGCTGCAATAGAAGCAGCAACAGGAGCCGTGGGTCAATCGCCC
TCGTTGTGGTGCTCTCTGCATGGCTCCCCCACCTTTGGGGATGGTCGGCA
GCAGCAGCGGATGAAGCGGGCACCATCGGAGGAGCTGGAAGACGCGGCGA
ATGAGCTCACGAAGCGACTCAGACTTGAAAGTGGGGCCTCGGCACGGCTT
CGACAGGGCATGCTCGATTCACTGAGAGGGCCGACTGCCCTAACAGGGGA
AGGTCTCCGAGGAAGTACCGACGCCTCAAGAACTTCATCTGATTGA

Synonyms

Publications